Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_24011_v3 Cicer arietinum L. HOM05D007266 ORTHO05D005982 3.0e-173 611.7 298 100.0
Ca_24018_v3 Cicer arietinum L. HOM05D007266 ORTHO05D005982 3.0e-173 611.7 298 100.0
TPR.G8521 Trifolium pratense HOM05D007266 ORTHO05D005982 5.1e-128 461.5 305 80.0
Psat4g144600 Pisum sativum HOM05D007266 ORTHO05D005982 9.5e-127 457.2 303 77.6
Medtr8g040640 Medicago truncatula HOM05D007266 ORTHO05D005982 6.2e-126 454.5 301 77.7
Glyma.13G191900 Glycine max HOM05D007266 ORTHO05D005982 1.3e-91 340.5 292 63.0
Glyma.15G229400 Glycine max HOM05D007266 ORTHO05D005982 3.2e-90 335.9 294 61.6
Lj3g0024959 Lotus japonicus HOM05D007266 ORTHO05D005982 2.3e-88 329.7 290 60.3
Phvul.011G200200 Phaseolus vulgaris HOM05D007266 ORTHO05D005982 1.8e-85 320.1 295 59.0
Lalb_Chr19g0132921 Lupinus albus HOM05D007266 ORTHO05D005982 1.6e-78 297.0 291 57.4
Glyma.04G133400 Glycine max HOM05D007266 ORTHO05D005982 2.8e-78 296.2 300 54.3
VMungo1127G1999 Vigna mungo HOM05D007266 ORTHO05D005982 6.3e-78 295.0 308 55.5
arahy.Tifrunner.gnm1.ann1.E0LNSJ Arachis hypogaea HOM05D007266 ORTHO05D005982 1.3e-70 270.8 313 50.5
arahy.Tifrunner.gnm1.ann1.5HCQ47 Arachis hypogaea HOM05D007266 ORTHO05D005982 2.8e-70 269.6 326 49.4
VMungo1080G1603 Vigna mungo HOM05D007266 ORTHO05D005982 1.1e-69 267.7 301 50.5
Phvul.005G018800 Phaseolus vulgaris HOM05D007266 ORTHO05D005982 4.4e-63 245.7 301 47.8
arahy.Tifrunner.gnm1.ann1.IJY9PN Arachis hypogaea HOM05D007266 ORTHO05D005982 2.1e-57 226.9 292 46.6
arahy.Tifrunner.gnm1.ann1.78H5KP Arachis hypogaea HOM05D007266 ORTHO05D005982 2.7e-57 226.5 305 46.2
Haze_02992 Corylus avellana HOM05D007266 ORTHO05D005982 4.8e-54 215.7 340 39.7
Cfa010951 Carpinus fangiana HOM05D007266 ORTHO05D005982 7.0e-53 211.8 329 41.3
CiPaw.14G009500 Carya illinoinensis HOM05D007266 ORTHO05D005982 7.7e-52 208.4 325 39.7
Glyma.11G158200 Glycine max HOM05D007266 ORTHO05D005982 1.3e-51 207.6 209 54.1
FvH4_7g03880 Fragaria vesca HOM05D007266 ORTHO05D005982 6.5e-51 205.3 329 39.8
FAN01G0656 Fragaria x ananassa HOM05D007266 ORTHO05D005982 2.5e-50 203.4 333 40.5
FAN06G1886 Fragaria x ananassa HOM05D007266 ORTHO05D005982 9.4e-50 201.4 331 39.9
Prupe.2G043600 Prunus persica HOM05D007266 ORTHO05D005982 1.2e-49 201.1 331 39.9
Thecc.10G142300 Theobroma cacao HOM05D007266 ORTHO05D005982 1.6e-49 200.7 330 41.5
FAN03G0408 Fragaria x ananassa HOM05D007266 ORTHO05D005982 8.0e-49 198.4 331 39.9
Lj3g0005568 Lotus japonicus HOM05D007266 ORTHO05D005982 1.4e-48 197.6 235 49.4
FAN10G1696 Fragaria x ananassa HOM05D007266 ORTHO05D005982 2.3e-48 196.8 331 39.3
MD07G1043900 Malus domestica HOM05D007266 ORTHO05D005982 2.3e-48 196.8 331 39.0
RcHm_v2.0_Chr1g0327331 Rosa chinensis HOM05D007266 ORTHO05D005982 6.8e-48 195.3 331 39.6
Duzib128G0414 Durio zibethinus HOM05D007266 ORTHO05D005982 4.4e-47 192.6 295 41.0
Sabra01G0022900 Salix brachista HOM05D007266 ORTHO05D005982 4.4e-47 192.6 330 39.7
Lalb_Chr01g0007431 Lupinus albus HOM05D007266 ORTHO05D005982 1.8e-45 187.2 166 59.0
TWI15G1169 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 3.8e-43 179.5 328 37.2
COL.COLO4_06637 Corchorus olitorius HOM05D007266 ORTHO05D005982 8.5e-43 178.3 338 38.2
CiPaw.06G056200 Carya illinoinensis HOM05D007266 ORTHO05D005982 1.5e-42 177.6 324 36.1
Manes.11G007700 Manihot esculenta HOM05D007266 ORTHO05D005982 1.5e-39 167.5 328 36.6
Potri.001G031800 Populus trichocarpa HOM05D007266 ORTHO05D005982 7.5e-39 165.2 293 38.6
Atru.chr12.1311 Acer truncatum HOM05D007266 ORTHO05D005982 4.9e-38 162.5 331 35.6
Gorai.009G299100 Gossypium raimondii HOM05D007266 ORTHO05D005982 1.4e-37 161.0 292 37.0
Manes.04G156300 Manihot esculenta HOM05D007266 ORTHO05D005982 3.1e-37 159.8 329 34.7
Actinidia01687 Actinidia chinensis HOM05D000639 ORTHO05D007519 7.0e-37 158.7 332 34.0
Gohir.A05G283500 Gossypium hirsutum HOM05D007266 ORTHO05D005982 2.0e-36 157.1 291 35.7
Rhsim01G0124500 Rhododendron simsii HOM05D007266 ORTHO05D005982 2.0e-36 157.1 327 33.3
vmacro21145 Vaccinium macrocarpon HOM05D007266 ORTHO05D005982 2.3e-35 153.7 326 33.4
Dinv11235 Davidia involucrata HOM05D007266 ORTHO05D005982 7.3e-34 148.7 291 37.5
TAR633G1403 Trochodendron aralioides HOM05D007266 ORTHO05D005982 5.2e-32 142.5 335 34.0
TAR369G0213 Trochodendron aralioides HOM05D007266 ORTHO05D005982 2.0e-31 140.6 344 30.5
Actinidia01519 Actinidia chinensis HOM05D007266 ORTHO05D005982 3.4e-31 139.8 332 32.5
Lalb_Chr01g0007421 Lupinus albus HOM05D007266 ORTHO05D005982 5.7e-31 139.0 128 57.0
TWI63G1068 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 3.7e-30 136.3 283 33.9
Hund13391 Selenicereus undatus HOM05D007266 ORTHO05D005982 7.0e-29 132.1 356 32.0
Hma1.2p1_0837F.1_g226230 Hydrangea macrophylla HOM05D007266 ORTHO05D005982 2.7e-28 130.2 330 32.7
Eucgr.J00068 Eucalyptus grandis HOM05D007266 ORTHO05D005982 1.3e-27 127.9 319 31.7
QL04p021455 Quercus lobata HOM05D007266 ORTHO05D005982 1.3e-27 127.9 149 47.7
QL07p029255 Quercus lobata HOM05D007266 ORTHO05D005982 1.3e-27 127.9 149 47.7
TWI38G2050 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 6.6e-27 125.6 321 32.1
Sabra03G0144500 Salix brachista HOM05D007266 ORTHO05D005982 1.1e-26 124.8 425 27.3
Cpa.g.sc169.34 Carica papaya HOM05D007266 ORTHO05D005982 2.3e-24 117.1 398 27.1
PGR044G2654 Punica granatum HOM05D007266 ORTHO05D005982 3.4e-23 113.2 307 33.2
Oeu013066.1 Olea europaea HOM05D007266 ORTHO05D005982 7.0e-21 105.5 319 29.5
EL10Ac2g02761 Beta vulgaris HOM05D007266 ORTHO05D005982 9.2e-21 105.1 328 27.7
FAN03G2213 Fragaria x ananassa HOM05D007266 ORTHO05D005982 1.6e-20 104.4 106 50.0
DCAR_029711 Daucus carota HOM05D007266 ORTHO05D005982 6.0e-20 102.4 299 30.1
Lsat_1_v5_gn_1_118261 Lactuca sativa HOM05D007266 ORTHO05D005982 8.6e-19 98.6 263 31.2
GSVIVG01036604001 Vitis vinifera HOM05D007266 ORTHO05D005982 2.5e-18 97.1 209 32.5
CANSAT56G2989 Cannabis sativa HOM05D007266 ORTHO05D005982 4.3e-18 96.3 339 29.5
Ah.12g065060 Amaranthus hybridus HOM05D007266 ORTHO05D005982 2.1e-17 94.0 302 27.5
HanXRQChr05g0146291 Helianthus annuus HOM05D007266 ORTHO05D005982 2.1e-17 94.0 299 31.4
AUR62031740 Chenopodium quinoa HOM05D007266 ORTHO05D005982 6.2e-17 92.4 358 27.1
Oeu058685.1 Olea europaea HOM05D007266 ORTHO05D005982 1.4e-16 91.3 327 27.2
Gohir.D05G284500 Gossypium hirsutum HOM05D007266 ORTHO05D005982 2.3e-16 90.5 165 34.5
Ah.10g030010 Amaranthus hybridus HOM05D007266 ORTHO05D005982 4.0e-16 89.7 309 27.8
QL04p021458 Quercus lobata HOM05D007266 ORTHO05D005982 6.8e-16 89.0 108 46.3
QL07p029253 Quercus lobata HOM05D007266 ORTHO05D005982 6.8e-16 89.0 108 46.3
Aa31LG3G6540 Aethionema arabicum HOM05D008873 ORTHO05D005982 2.6e-15 87.0 298 27.9
Thhalv10014291m.g Eutrema salsugineum HOM05D008873 ORTHO05D005982 3.4e-15 86.7 296 28.7
Ciclev10001901m.g Citrus clementina HOM05D007266 ORTHO05D005982 4.4e-15 86.3 121 43.8
Nn7g36823 Nelumbo nucifera HOM05D007266 ORTHO05D005982 1.3e-14 84.7 342 27.2
Potri.003G193800 Populus trichocarpa HOM05D007266 ORTHO05D005982 1.7e-14 84.3 174 38.5
AUR62032625 Chenopodium quinoa HOM05D007266 ORTHO05D005982 2.2e-14 84.0 323 27.9
CSS0040931 Camellia sinensis var. sinensis HOM05D007266 ORTHO05D005982 2.9e-14 83.6 149 34.9
THA.LOC104799328 Tarenaya hassleriana HOM05D008873 ORTHO05D005982 4.9e-14 82.8 301 26.9
AL6G17140 Arabidopsis lyrata HOM05D008873 ORTHO05D005982 1.1e-13 81.6 294 27.9
Migut.B01189 Erythranthe guttata HOM05D007266 ORTHO05D005982 1.1e-13 81.6 297 27.3
Sp6g35890 Schrenkiella parvula HOM05D008873 ORTHO05D005982 1.1e-13 81.6 294 27.2
Sp3g10530 Schrenkiella parvula HOM05D008873 ORTHO05D005982 1.4e-13 81.3 295 28.1
AL3G23970 Arabidopsis lyrata HOM05D008873 ORTHO05D005982 3.2e-13 80.1 293 29.4
BcaB04g21084 Brassica carinata HOM05D008873 ORTHO05D005982 3.2e-13 80.1 293 27.6
BcaB04g21086 Brassica carinata HOM05D008873 ORTHO05D005982 3.2e-13 80.1 293 27.6
Nitab4.5_0002838g0050 Nicotiana tabacum HOM05D007266 ORTHO05D005982 4.1e-13 79.7 329 27.1
TAR623G0101 Trochodendron aralioides HOM05D007266 ORTHO05D005982 4.1e-13 79.7 134 36.6
Carub.0003s1168 Capsella rubella HOM05D008873 ORTHO05D005982 5.4e-13 79.3 293 27.3
Lj9C658G11 Lonicera japonica HOM05D007266 ORTHO05D005982 9.2e-13 78.6 104 44.2
BcaC06g32527 Brassica carinata HOM05D008873 ORTHO05D005982 1.2e-12 78.2 297 25.9
Sc11g0006320 Simmondsia chinensis HOM05D007266 ORTHO05D005982 1.6e-12 77.8 127 36.2
BcaC01g04052 Brassica carinata HOM05D008873 ORTHO05D005982 2.1e-12 77.4 302 27.8
C03p45590 Brassica napus HOM05D008873 ORTHO05D005982 2.1e-12 77.4 302 27.8
BolC3t16836H Brassica oleracea HOM05D008873 ORTHO05D005982 2.1e-12 77.4 302 27.8
CARHR086860 Cardamine hirsuta HOM05D008873 ORTHO05D005982 2.1e-12 77.4 299 29.8
A03p37600 Brassica napus HOM05D008873 ORTHO05D005982 2.7e-12 77.0 302 28.1
BraA03t12914Z Brassica rapa HOM05D008873 ORTHO05D005982 2.7e-12 77.0 301 28.6
ECA248G2125 Erigeron canadensis HOM05D007266 ORTHO05D005982 2.7e-12 77.0 246 28.5
AT3G12320 Arabidopsis thaliana HOM05D008873 ORTHO05D005982 3.5e-12 76.6 287 27.5
CAN.G134.28 Capsicum annuum HOM05D005009 ORTHO05D006203 4.6e-12 76.3 334 27.8
Thhalv10021314m.g Eutrema salsugineum HOM05D008873 ORTHO05D005982 6.0e-12 75.9 292 27.7
Nitab4.5_0004168g0140 Nicotiana tabacum HOM05D007266 ORTHO05D005982 6.0e-12 75.9 324 26.5
MBI13_g09214_MAGBIO Magnolia biondii HOM05D007266 ORTHO05D005982 7.8e-12 75.5 325 26.2
Sopen01g040350 Solanum pennellii HOM05D007266 ORTHO05D005982 7.8e-12 75.5 315 24.8
BcaC05g29270 Brassica carinata HOM05D008873 ORTHO05D005982 1.3e-11 74.7 293 29.0
A10p28780 Brassica napus HOM05D008873 ORTHO05D005982 1.7e-11 74.3 299 26.8
C05p55490 Brassica napus HOM05D008873 ORTHO05D005982 1.7e-11 74.3 302 28.5
C09p69120 Brassica napus HOM05D008873 ORTHO05D005982 1.7e-11 74.3 292 26.7
BraA10t44925Z Brassica rapa HOM05D008873 ORTHO05D005982 1.7e-11 74.3 299 26.8
Aqoxy1G00397_Aqoxy1G00398 Aquilegia oxysepala HOM05D007266 ORTHO05D005982 2.3e-11 73.9 105 37.1
BolC9t59656H Brassica oleracea HOM05D008873 ORTHO05D005982 2.3e-11 73.9 296 27.7
A05p37060 Brassica napus HOM05D008873 ORTHO05D005982 3.0e-11 73.6 296 27.0
Carub.0006s0591 Capsella rubella HOM05D008873 ORTHO05D005982 5.1e-11 72.8 292 27.7
PGSC0003DMG402003286 Solanum tuberosum HOM05D007266 ORTHO05D005982 5.1e-11 72.8 326 26.1
SalBow5G4193 Salvia bowleyana HOM05D007266 ORTHO05D005982 6.6e-11 72.4 307 24.1
BcaNung04207 Brassica carinata HOM05D008873 ORTHO05D005982 3.3e-10 70.1 304 27.0
HanXRQChr11g0341241 Helianthus annuus HOM05D007266 ORTHO05D005982 1.2e-09 68.2 179 31.8
AT5G06980 Arabidopsis thaliana HOM05D008873 ORTHO05D005982 8.1e-09 65.5 242 27.3
SGA_v2.0_scaffold124G33643 Striga asiatica HOM05D007266 ORTHO05D005982 8.1e-09 65.5 304 27.3
BcaB01g05709 Brassica carinata HOM05D008873 ORTHO05D005982 1.4e-08 64.7 299 25.8
CiPaw.13G012100 Carya illinoinensis HOM05D004414 ORTHO05D001824 1.8e-08 64.3 139 33.1
Dinv32008 Davidia involucrata HOM05D007266 ORTHO05D005982 1.8e-08 64.3 159 32.7
TWI23G0811 Tripterygium wilfordii HOM05D003662 ORTHO05D001824 4.0e-08 63.2 140 29.3
BolC5t34215H Brassica oleracea HOM05D008873 ORTHO05D005982 1.5e-07 61.2 310 27.1
Solyc01g096630.3 Solanum lycopersicum HOM05D007266 ORTHO05D005982 1.5e-07 61.2 92 38.0
Eucgr.G03246 Eucalyptus grandis HOM05D004414 ORTHO05D001824 2.6e-07 60.5 157 27.4
EL10Ac2g02826 Beta vulgaris HOM05D004414 ORTHO05D001824 3.4e-07 60.1 136 30.9
CSS0012064 Camellia sinensis var. sinensis HOM05D003662 ORTHO05D001824 3.4e-07 60.1 118 29.7
Glyma.08G179400 Glycine max HOM05D003662 ORTHO05D001824 3.4e-07 60.1 112 32.1
Glyma.15G053000 Glycine max HOM05D003662 ORTHO05D001824 3.4e-07 60.1 112 31.2
CsaV3_4G009390 Cucumis sativus L. HOM05D003662 ORTHO05D001824 4.4e-07 59.7 207 24.2
TPR.G9876 Trifolium pratense HOM05D004414 ORTHO05D001824 4.4e-07 59.7 115 33.0
PSO135G0681 Papaver somniferum HOM05D007266 ORTHO05D005982 7.6e-07 58.9 129 31.8
Psat1g216760 Pisum sativum HOM05D003662 ORTHO05D001824 1.3e-06 58.2 145 27.6
PGR042G2509 Punica granatum HOM05D003662 ORTHO05D001824 1.3e-06 58.2 142 28.9
SEGI_13704 Sequoiadendron giganteum HOM05D004414 ORTHO05D001824 1.3e-06 58.2 112 33.0
MELO3C012461.2 Cucumis melo HOM05D004414 ORTHO05D001824 1.7e-06 57.8 138 28.3
Sed0007735 Sechium edule HOM05D004414 ORTHO05D001824 1.7e-06 57.8 163 26.4
VMungo0540G1102 Vigna mungo HOM05D003662 ORTHO05D001824 1.7e-06 57.8 102 31.4
Atru.chr12.1399 Acer truncatum HOM05D004414 ORTHO05D001824 2.2e-06 57.4 136 28.7
Haze_03067 Corylus avellana HOM05D004414 ORTHO05D001824 2.2e-06 57.4 137 29.9
Peaxi162Scf00220g00313 Petunia axillaris HOM05D007266 ORTHO05D005982 2.2e-06 57.4 89 39.3
Phvul.006G206900 Phaseolus vulgaris HOM05D003662 ORTHO05D001824 2.2e-06 57.4 219 25.1
ATR0753G089 Amborella trichopoda HOM05D003662 ORTHO05D001824 2.9e-06 57.0 139 28.1
EL10Ac9g21467 Beta vulgaris HOM05D003662 ORTHO05D001824 2.9e-06 57.0 245 25.3
MELO3C019019.2 Cucumis melo HOM05D003662 ORTHO05D001824 2.9e-06 57.0 207 23.7
Dinv09038 Davidia involucrata HOM05D003662 ORTHO05D001824 3.8e-06 56.6 113 28.3
Lj3g0012335 Lotus japonicus HOM05D004414 ORTHO05D001824 3.8e-06 56.6 120 32.5
PSO384G1467 Papaver somniferum HOM05D007266 ORTHO05D005982 3.8e-06 56.6 129 30.2
FAN10G4033 Fragaria x ananassa HOM05D004414 ORTHO05D001824 4.9e-06 56.2 156 28.8
Manes.14G166300 Manihot esculenta HOM05D003662 ORTHO05D001824 4.9e-06 56.2 119 31.1
Potri.003G200600 Populus trichocarpa HOM05D004414 ORTHO05D001824 4.9e-06 56.2 121 33.1
Potri.T126606 Populus trichocarpa HOM05D004414 ORTHO05D001824 4.9e-06 56.2 121 33.1
Potri.T127206 Populus trichocarpa HOM05D004414 ORTHO05D001824 4.9e-06 56.2 121 33.1
SEGI_03595 Sequoiadendron giganteum HOM05D004414 ORTHO05D001824 4.9e-06 56.2 116 31.9
ClCG10G009220 Citrullus lanatus HOM05D003662 ORTHO05D001824 6.4e-06 55.8 212 24.5
TWI63G0867 Tripterygium wilfordii HOM05D004414 ORTHO05D001824 6.4e-06 55.8 127 29.1
Duzib128G0092 Durio zibethinus HOM05D004414 ORTHO05D001824 8.4e-06 55.5 143 28.0
Sabra03G0148200 Salix brachista HOM05D004414 ORTHO05D001824 8.4e-06 55.5 148 29.7
Sed0006995 Sechium edule HOM05D003662 ORTHO05D001824 8.4e-06 55.5 233 24.5


User provided reference genes

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