Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_23830_v3 Cicer arietinum L. HOM05D000921 ORTHO05D002852 0.0e+00 1483.0 801 100.0
Psat4g150320 Pisum sativum HOM05D000921 ORTHO05D002852 0.0e+00 1243.4 798 84.6
Medtr8g035750 Medicago truncatula HOM05D000921 ORTHO05D002852 0.0e+00 1241.1 783 85.4
TPR.G28298 Trifolium pratense HOM05D000921 ORTHO05D002852 0.0e+00 1234.6 782 85.3
Lalb_Chr07g0189601 Lupinus albus HOM05D000921 ORTHO05D002852 0.0e+00 1137.1 786 78.4
Glyma.03G021400 Glycine max HOM05D000921 ORTHO05D002852 0.0e+00 1110.1 786 76.8
LjContig00136g0027596 Lotus japonicus HOM05D000921 ORTHO05D002852 0.0e+00 1099.3 785 75.4
VMungo0331G0704 Vigna mungo HOM05D000921 ORTHO05D002852 0.0e+00 1096.6 785 75.5
Glyma.18G223300 Glycine max HOM05D000921 ORTHO05D002852 0.0e+00 1095.9 785 75.4
Glyma.09G267100 Glycine max HOM05D000921 ORTHO05D002852 0.0e+00 1089.7 785 74.8
Ca_07837_v3 Cicer arietinum L. HOM05D000921 ORTHO05D002852 0.0e+00 1087.0 787 74.3
TPR.G37773 Trifolium pratense HOM05D000921 ORTHO05D002852 0.0e+00 1077.8 786 74.2
Psat3g104040 Pisum sativum HOM05D000921 ORTHO05D002852 0.0e+00 1076.2 785 75.4
Medtr7g075660 Medicago truncatula HOM05D000921 ORTHO05D002852 1.6e-309 1065.8 786 73.7
VMungo1383G3171 Vigna mungo HOM05D000921 ORTHO05D002852 1.1e-307 1059.7 784 73.1
arahy.Tifrunner.gnm1.ann1.4FT79Q Arachis hypogaea HOM05D000921 ORTHO05D002852 2.4e-305 1052.0 785 72.5
Lalb_Chr01g0021281 Lupinus albus HOM05D000921 ORTHO05D002852 2.6e-304 1048.5 785 72.9
Phvul.008G074600 Phaseolus vulgaris HOM05D000921 ORTHO05D002852 9.9e-304 1046.6 784 72.4
QL08p051741 Quercus lobata HOM05D000921 ORTHO05D002852 1.5e-299 1032.7 785 71.8
CANSAT56G4522 Cannabis sativa HOM05D000921 ORTHO05D002852 3.4e-296 1021.5 793 71.0
CiPaw.02G165500 Carya illinoinensis HOM05D000921 ORTHO05D002852 1.7e-295 1019.2 794 70.3
Cpa.g.sc18.151 Carica papaya HOM05D000921 ORTHO05D002852 3.5e-293 1011.5 809 68.6
MD02G1199600 Malus domestica HOM05D000921 ORTHO05D002852 1.0e-292 1010.0 792 70.1
FvH4_7g12350 Fragaria vesca HOM05D000921 ORTHO05D002852 3.9e-292 1008.1 792 69.9
Lj3g0001885 Lotus japonicus HOM05D000921 ORTHO05D002852 3.9e-292 1008.1 676 80.9
RcHm_v2.0_Chr1g0351141 Rosa chinensis HOM05D000921 ORTHO05D002852 6.9e-289 997.3 792 69.6
Potri.002G150000 Populus trichocarpa HOM05D000921 ORTHO05D002852 4.5e-288 994.6 805 68.9
FAN06G2098 Fragaria x ananassa HOM05D000921 ORTHO05D002852 7.6e-288 993.8 787 70.1
ClCG05G002030 Citrullus lanatus HOM05D000921 ORTHO05D002852 2.9e-287 991.9 797 68.6
FAN01G1835 Fragaria x ananassa HOM05D000921 ORTHO05D002852 2.9e-287 991.9 784 69.8
FAN06G4917 Fragaria x ananassa HOM05D000921 ORTHO05D002852 3.8e-287 991.5 787 69.9
Haze_16736 Corylus avellana HOM05D000921 ORTHO05D002852 4.9e-287 991.1 786 69.7
Manes.05G043300 Manihot esculenta HOM05D000921 ORTHO05D002852 5.5e-286 987.6 801 69.4
FAN03G0226 Fragaria x ananassa HOM05D000921 ORTHO05D002852 9.3e-286 986.9 787 69.9
Thecc.01G372900 Theobroma cacao HOM05D000921 ORTHO05D002852 1.6e-285 986.1 812 67.6
COL.COLO4_12586 Corchorus olitorius HOM05D000921 ORTHO05D002852 3.5e-285 984.9 812 67.4
Atru.chr5.339 Acer truncatum HOM05D000921 ORTHO05D002852 3.3e-283 978.4 812 67.4
Ciclev10018468m.g Citrus clementina HOM05D000921 ORTHO05D002852 3.1e-281 971.8 793 68.1
FAN10G3046 Fragaria x ananassa HOM05D000921 ORTHO05D002852 3.1e-281 971.8 815 67.2
Potri.014G072600 Populus trichocarpa HOM05D000921 ORTHO05D002852 4.0e-281 971.5 806 67.6
CsaV3_3G009490 Cucumis sativus L. HOM05D000921 ORTHO05D002852 2.0e-280 969.1 793 67.5
FAN10G3969 Fragaria x ananassa HOM05D000921 ORTHO05D002852 4.9e-279 964.5 815 66.9
THA.LOC104827617 Tarenaya hassleriana HOM05D000921 ORTHO05D002852 4.9e-279 964.5 812 66.0
CSS0003914 Camellia sinensis var. sinensis HOM05D000921 ORTHO05D002852 1.9e-278 962.6 812 67.0
GSVIVG01027547001 Vitis vinifera HOM05D000921 ORTHO05D002852 4.2e-278 961.4 815 66.0
Dinv43732 Davidia involucrata HOM05D000921 ORTHO05D002852 2.1e-277 959.1 811 66.2
MELO3C006169.2 Cucumis melo HOM05D000921 ORTHO05D002852 2.7e-277 958.7 793 67.2
THA.LOC104801996 Tarenaya hassleriana HOM05D000921 ORTHO05D002852 3.5e-277 958.4 813 65.8
Eucgr.E01352 Eucalyptus grandis HOM05D000921 ORTHO05D002852 7.9e-277 957.2 811 65.8
Sed0001143 Sechium edule HOM05D000921 ORTHO05D002852 1.6e-274 949.5 798 66.0
Actinidia09569 Actinidia chinensis HOM05D000921 ORTHO05D002852 2.1e-274 949.1 810 66.5
Sed0009254 Sechium edule HOM05D000921 ORTHO05D002852 2.1e-274 949.1 797 66.6
Dinv32396 Davidia involucrata HOM05D000921 ORTHO05D002852 3.7e-274 948.3 811 65.0
TWI14G1087 Tripterygium wilfordii HOM05D000921 ORTHO05D002852 2.4e-273 945.7 811 66.1
Gohir.A11G082900 Gossypium hirsutum HOM05D000921 ORTHO05D002852 5.3e-273 944.5 810 65.6
Gorai.007G092900 Gossypium raimondii HOM05D000921 ORTHO05D002852 3.4e-272 941.8 810 65.4
TAR629G2419 Trochodendron aralioides HOM05D000921 ORTHO05D002852 1.0e-271 940.3 805 64.8
CARHR140720 Cardamine hirsuta HOM05D000921 ORTHO05D002852 6.5e-271 937.6 802 65.5
Gohir.D11G087000 Gossypium hirsutum HOM05D000921 ORTHO05D002852 5.5e-270 934.5 810 64.9
Peaxi162Scf00416g00310 Petunia axillaris HOM05D000921 ORTHO05D002852 9.3e-270 933.7 811 64.1
Sopen01g037870 Solanum pennellii HOM05D000921 ORTHO05D002852 3.0e-268 928.7 811 63.9
TAR636G1827 Trochodendron aralioides HOM05D000921 ORTHO05D002852 5.7e-267 924.5 812 63.4
Aa31LG1G27030 Aethionema arabicum HOM05D000921 ORTHO05D002852 9.7e-267 923.7 812 63.7
Sp4g27560 Schrenkiella parvula HOM05D000921 ORTHO05D002852 1.3e-266 923.3 805 64.5
Sp5g02330 Schrenkiella parvula HOM05D000921 ORTHO05D002852 1.6e-266 922.9 810 64.0
C04p06480 Brassica napus HOM05D000921 ORTHO05D002852 1.8e-265 919.5 804 63.8
BolC4t22272H Brassica oleracea HOM05D000921 ORTHO05D002852 1.8e-265 919.5 804 63.8
BraA05t19525Z Brassica rapa HOM05D000921 ORTHO05D002852 1.2e-264 916.8 804 63.7
Carub.0004s2816 Capsella rubella HOM05D000921 ORTHO05D002852 2.6e-264 915.6 804 63.9
Aqoxy7G00539 Aquilegia oxysepala HOM05D000921 ORTHO05D002852 1.7e-263 912.9 810 63.7
Thhalv10001277m.g Eutrema salsugineum HOM05D000921 ORTHO05D002852 3.8e-263 911.8 804 64.1
A05p05550 Brassica napus HOM05D000921 ORTHO05D002852 5.0e-263 911.4 804 63.6
Nn6g34350 Nelumbo nucifera HOM05D000921 ORTHO05D002852 6.5e-263 911.0 811 62.9
SGA_v2.0_scaffold303G47875 Striga asiatica HOM05D000921 ORTHO05D002852 3.2e-262 908.7 812 63.7
AL5G43240 Arabidopsis lyrata HOM05D000921 ORTHO05D002852 2.7e-261 905.6 807 62.1
AUR62013603 Chenopodium quinoa HOM05D000921 ORTHO05D002852 3.6e-261 905.2 810 62.2
Thhalv10005733m.g Eutrema salsugineum HOM05D000921 ORTHO05D002852 2.0e-259 899.4 807 62.7
Ah.05g175310 Amaranthus hybridus HOM05D000921 ORTHO05D002852 3.3e-259 898.7 804 62.8
Nn1g01159 Nelumbo nucifera HOM05D000921 ORTHO05D002852 4.3e-259 898.3 793 63.2
Rhsim07G0024100 Rhododendron simsii HOM05D000921 ORTHO05D002852 5.7e-259 897.9 811 63.1
Carub.0005s2767 Capsella rubella HOM05D000921 ORTHO05D002852 7.4e-259 897.5 815 61.8
AL4G44720 Arabidopsis lyrata HOM05D000921 ORTHO05D002852 2.8e-258 895.6 803 63.3
Migut.F01430 Erythranthe guttata HOM05D000921 ORTHO05D002852 6.3e-258 894.4 808 63.6
Sc26g0001150 Simmondsia chinensis HOM05D000921 ORTHO05D002852 2.4e-257 892.5 807 62.8
Nitab4.5_0002436g0070 Nicotiana tabacum HOM05D000921 ORTHO05D002852 2.0e-256 889.4 821 62.4
AT2G45540 Arabidopsis thaliana HOM05D000921 ORTHO05D002852 3.4e-256 888.6 803 63.0
EL10Ac1g00924 Beta vulgaris HOM05D000921 ORTHO05D002852 1.3e-255 886.7 807 62.1
C04p31670 Brassica napus HOM05D000921 ORTHO05D002852 1.7e-255 886.3 812 61.5
BolC4t24715H Brassica oleracea HOM05D000921 ORTHO05D002852 1.7e-255 886.3 812 61.5
Gorai.004G155500 Gossypium raimondii HOM05D000921 ORTHO05D002852 2.2e-255 885.9 805 61.5
Cc02_g36420 Coffea canephora HOM05D000921 ORTHO05D002852 2.9e-255 885.6 801 62.0
BcaC07g40611 Brassica carinata HOM05D000921 ORTHO05D002852 1.4e-254 883.2 800 62.2
PSO478G4503 Papaver somniferum HOM05D000921 ORTHO05D002852 2.5e-254 882.5 812 60.8
C08p35860 Brassica napus HOM05D000921 ORTHO05D002852 3.2e-254 882.1 800 62.2
BolC8t51174H Brassica oleracea HOM05D000921 ORTHO05D002852 3.2e-254 882.1 800 62.2
vmacro13368 Vaccinium macrocarpon HOM05D000921 ORTHO05D002852 5.5e-254 881.3 969 54.9
MBI04_g43159_MAGBIO Magnolia biondii HOM05D000921 ORTHO05D002852 7.2e-254 880.9 827 60.3
PSO782G1119 Papaver somniferum HOM05D000921 ORTHO05D002852 7.2e-254 880.9 812 60.7
A04p01340 Brassica napus HOM05D000921 ORTHO05D002852 9.4e-254 880.6 792 62.8
Oeu029683.1 Olea europaea HOM05D000921 ORTHO05D002852 9.4e-254 880.6 809 60.8
AUR62004245 Chenopodium quinoa HOM05D000921 ORTHO05D002852 1.6e-253 879.8 810 60.7
Oeu003495.3 Olea europaea HOM05D000921 ORTHO05D002852 2.1e-253 879.4 809 61.7
BraA04t15853Z Brassica rapa HOM05D000921 ORTHO05D002852 4.7e-253 878.2 792 62.6
Gohir.D08G149700 Gossypium hirsutum HOM05D000921 ORTHO05D002852 4.7e-253 878.2 805 61.1
CARHR171310 Cardamine hirsuta HOM05D000921 ORTHO05D002852 2.3e-252 875.9 809 61.4
Lj7C526G8 Lonicera japonica HOM05D000921 ORTHO05D002852 6.7e-252 874.4 807 61.7
Sc02g0002400 Simmondsia chinensis HOM05D000921 ORTHO05D002852 6.7e-252 874.4 813 60.6
A09p53140 Brassica napus HOM05D000921 ORTHO05D002852 1.5e-251 873.2 803 62.0
BraA09t40739Z Brassica rapa HOM05D000921 ORTHO05D002852 1.5e-251 873.2 803 62.0
DCAR_025120 Daucus carota HOM05D000921 ORTHO05D002852 1.4e-249 866.7 810 60.9
Gohir.A08G031900 Gossypium hirsutum HOM05D000921 ORTHO05D002852 5.3e-249 864.8 817 61.9
Gohir.A08G128400 Gossypium hirsutum HOM05D000921 ORTHO05D002852 2.6e-248 862.4 812 59.2
BcaC07g42649 Brassica carinata HOM05D000921 ORTHO05D002852 1.7e-247 859.8 828 60.5
Gohir.D08G042932 Gossypium hirsutum HOM05D000921 ORTHO05D002852 1.9e-246 856.3 822 61.1
Gorai.004G041500 Gossypium raimondii HOM05D000921 ORTHO05D002852 3.6e-245 852.0 817 61.0
ECA236G3038 Erigeron canadensis HOM05D000921 ORTHO05D002852 7.0e-241 837.8 811 59.7
HanXRQChr04g0122231 Helianthus annuus HOM05D000921 ORTHO05D002852 3.8e-239 832.0 814 59.7
BcaC02g10197 Brassica carinata HOM05D000921 ORTHO05D002852 1.4e-236 823.5 815 58.4
Aa31LG10G15130 Aethionema arabicum HOM05D000921 ORTHO05D002852 1.8e-236 823.2 812 58.5
DCAR_006882 Daucus carota HOM05D000921 ORTHO05D002852 6.8e-236 821.2 811 59.6
Lsat_1_v5_gn_7_7601 Lactuca sativa HOM05D000921 ORTHO05D002852 2.7e-232 809.3 809 58.0
MBI12_g38016_MAGBIO Magnolia biondii HOM05D000921 ORTHO05D002852 3.2e-230 802.4 825 54.9
Zm00001eb074430 Zea mays HOM05D000921 ORTHO05D002852 1.8e-228 796.6 823 56.6
unitig_22.g5373 Utricularia gibba HOM05D000921 ORTHO05D002852 2.3e-228 796.2 794 56.4
CDE11G1134 Ceratophyllum demersum HOM05D000921 ORTHO05D002852 2.6e-227 792.7 824 55.5
Lsat_1_v5_gn_3_135480 Lactuca sativa HOM05D000921 ORTHO05D002852 1.3e-226 790.4 808 56.6
Gohir.D08G042866 Gossypium hirsutum HOM05D000921 ORTHO05D002852 1.8e-220 770.0 822 56.3
ECA240G3430 Erigeron canadensis HOM05D000921 ORTHO05D002852 1.7e-218 763.5 795 54.5
HanXRQChr03g0093641 Helianthus annuus HOM05D000921 ORTHO05D002852 1.7e-210 736.9 809 53.3
Zm00001eb249850 Zea mays HOM05D000921 ORTHO05D002852 1.2e-203 714.1 807 51.2
SEGI_07876 Sequoiadendron giganteum HOM05D000921 ORTHO05D002852 5.6e-198 695.3 826 50.2
Os02g0663300 Oryza sativa ssp. japonica HOM05D000921 ORTHO05D002852 6.4e-194 681.8 816 50.0
AT3G60920 Arabidopsis thaliana HOM05D000921 ORTHO05D002852 6.2e-181 638.6 807 50.2
HPP92_003358 Vanilla planifolia HOM05D000921 ORTHO05D002852 1.3e-165 587.8 817 45.4
Nitab4.5_0005340g0070 Nicotiana tabacum HOM05D000921 ORTHO05D002852 4.9e-162 575.9 508 61.8
Prupe.2G149000 Prunus persica HOM05D000921 ORTHO05D002852 5.7e-158 562.4 792 46.6
arahy.Tifrunner.gnm1.ann1.JZMQ8V Arachis hypogaea HOM05D000921 ORTHO05D002852 8.2e-157 558.5 643 55.5
AagrBONN_evm.TU.Sc2ySwM_117.767 Anthoceros agrestis HOM05D000921 ORTHO05D002852 1.8e-156 557.4 843 43.8
Pp3c8_11180 Physcomitrium patens HOM05D000921 ORTHO05D002852 7.2e-153 545.4 833 43.5
SMO347G0262 Selaginella moellendorffii HOM05D000921 ORTHO05D002852 1.2e-152 544.7 800 44.8
Mapoly0056s0137 Marchantia polymorpha HOM05D000921 ORTHO05D002852 4.5e-147 526.2 838 43.2
Pp3c25_6190 Physcomitrium patens HOM05D000921 ORTHO05D002852 1.2e-144 518.1 789 42.1
arahy.Tifrunner.gnm1.ann1.P2FPY5 Arachis hypogaea HOM05D000921 ORTHO05D002852 6.7e-143 512.3 530 59.8
CBR_g26196 Chara braunii HOM05D000921 ORTHO05D002852 6.1e-136 489.2 847 39.9
HPP92_009978 Vanilla planifolia HOM05D000921 ORTHO05D002852 1.6e-131 474.6 502 56.4
Lj9A573G74 Lonicera japonica HOM05D000921 ORTHO05D002852 1.9e-129 467.6 393 66.4
ATR0757G137 Amborella trichopoda HOM05D000921 ORTHO05D002852 2.1e-128 464.2 472 54.2
Solyc01g094060.4 Solanum lycopersicum HOM05D000921 ORTHO05D002852 2.2e-122 444.1 388 61.9
Lj9A573T77 Lonicera japonica HOM05D000921 ORTHO05D002852 3.2e-121 440.3 393 61.1
Pp3c16_14330 Physcomitrium patens HOM05D000921 ORTHO05D002852 8.0e-120 435.6 844 38.0
MD10G1005600 Malus domestica HOM05D000921 ORTHO05D002852 1.4e-116 424.9 376 67.0
MD10G1005700 Malus domestica HOM05D000921 ORTHO05D002852 6.8e-111 406.0 362 60.8
Nn6g32827 Nelumbo nucifera HOM05D000921 ORTHO05D002852 3.4e-102 377.1 297 66.7
ATR0757G054 Amborella trichopoda HOM05D000921 ORTHO05D002852 2.2e-93 347.8 320 66.6
AagrBONN_evm.TU.Sc2ySwM_368.3442 Anthoceros agrestis HOM05D000921 ORTHO05D002852 6.2e-80 303.1 712 35.7
Os04g0555600 Oryza sativa ssp. japonica HOM05D000921 ORTHO05D002852 5.8e-54 216.9 209 57.9
Hma1.2p1_0125F.1_g058670 Hydrangea macrophylla HOM05D000921 ORTHO05D002852 1.4e-31 142.5 95 70.5
Lsat_1_v5_gn_4_182060 Lactuca sativa HOM05D000921 ORTHO05D002852 4.2e-28 131.0 205 43.4
Nn1g01161 Nelumbo nucifera HOM05D000921 ORTHO05D002852 1.7e-24 119.0 77 70.1
HPP92_009979 Vanilla planifolia HOM05D000921 ORTHO05D002852 2.4e-23 115.2 265 34.7
Lsat_1_v5_gn_5_77901 Lactuca sativa HOM05D000921 ORTHO05D002852 5.2e-18 97.4 170 41.8
Zm00001eb371860 Zea mays HOM05D000921 ORTHO05D002852 1.2e-14 86.3 116 48.3
Zm00001eb302030 Zea mays HOM05D000921 ORTHO05D002852 2.7e-11 75.1 120 43.3
GSVIVG01034637001 Vitis vinifera HOM05D000921 ORTHO05D002852 1.7e-08 65.9 87 41.4


User provided reference genes

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