Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_23816_v3 Cicer arietinum L. HOM05D001476 ORTHO05D006149 0.0e+00 1654.8 842 100.0
Medtr4g014960 Medicago truncatula HOM05D001476 ORTHO05D006149 0.0e+00 1500.7 874 88.0
Psat0s2261g0240 Pisum sativum HOM05D001476 ORTHO05D006149 0.0e+00 1494.9 888 86.1
Lj3g0014893 Lotus japonicus HOM05D001476 ORTHO05D006149 0.0e+00 1491.5 846 89.0
TPR.G5272 Trifolium pratense HOM05D001476 ORTHO05D006149 0.0e+00 1488.8 868 88.1
Glyma.03G076900 Glycine max HOM05D001476 ORTHO05D006149 0.0e+00 1451.8 887 84.3
Glyma.01G111300 Glycine max HOM05D001476 ORTHO05D006149 0.0e+00 1448.3 888 83.7
Phvul.010G008300 Phaseolus vulgaris HOM05D001476 ORTHO05D006149 0.0e+00 1404.8 927 78.4
VMungo0331G0441 Vigna mungo HOM05D001476 ORTHO05D006149 0.0e+00 1389.4 907 79.4
Lalb_Chr07g0193321 Lupinus albus HOM05D001476 ORTHO05D006149 0.0e+00 1369.8 934 76.7
arahy.Tifrunner.gnm1.ann1.5UT5JQ Arachis hypogaea HOM05D001476 ORTHO05D006149 0.0e+00 1324.7 906 77.4
arahy.Tifrunner.gnm1.ann1.VBIR99 Arachis hypogaea HOM05D001476 ORTHO05D006149 0.0e+00 1319.3 906 77.0
GSVIVG01034014001 Vitis vinifera HOM05D001476 ORTHO05D006149 0.0e+00 1305.4 836 78.8
TAR402G0001 Trochodendron aralioides HOM05D001476 ORTHO05D006149 0.0e+00 1290.8 849 76.6
Thecc.05G022500 Theobroma cacao HOM05D001476 ORTHO05D006149 0.0e+00 1280.0 840 77.0
Dinv35515 Davidia involucrata HOM05D001476 ORTHO05D006149 0.0e+00 1278.5 846 76.8
Potri.016G110800 Populus trichocarpa HOM05D001476 ORTHO05D006149 0.0e+00 1270.0 869 75.3
TWI74G1595 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 0.0e+00 1268.4 857 75.0
Potri.006G096100 Populus trichocarpa HOM05D001476 ORTHO05D006149 0.0e+00 1268.1 869 75.6
CSS0024803 Camellia sinensis var. sinensis HOM05D001476 ORTHO05D006149 0.0e+00 1266.1 847 76.0
Duzib128G0639 Durio zibethinus HOM05D001476 ORTHO05D006149 0.0e+00 1263.4 831 76.7
Ciclev10011050m.g Citrus clementina HOM05D001476 ORTHO05D006149 0.0e+00 1262.7 855 74.7
Manes.09G101900 Manihot esculenta HOM05D001476 ORTHO05D006149 0.0e+00 1261.1 864 74.4
Actinidia13780 Actinidia chinensis HOM05D001476 ORTHO05D006149 0.0e+00 1260.0 825 77.2
Gohir.A09G163100 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1260.0 832 76.2
Haze_20947 Corylus avellana HOM05D001476 ORTHO05D006149 0.0e+00 1259.2 915 71.4
Nn2g13602 Nelumbo nucifera HOM05D001476 ORTHO05D006149 0.0e+00 1257.3 846 74.6
Prupe.6G270500 Prunus persica HOM05D001476 ORTHO05D006149 0.0e+00 1257.3 864 75.1
PGR031G2805 Punica granatum HOM05D001476 ORTHO05D006149 0.0e+00 1256.5 819 76.6
Gohir.D09G158600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1253.8 832 75.7
Hma1.2p1_0763F.1_g214610 Hydrangea macrophylla HOM05D001476 ORTHO05D006149 0.0e+00 1252.3 821 76.6
Cpa.g.sc56.111 Carica papaya HOM05D001476 ORTHO05D006149 0.0e+00 1251.5 866 74.0
CiPaw.09G205700 Carya illinoinensis HOM05D001476 ORTHO05D006149 0.0e+00 1251.5 875 74.2
TWI77G0827 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 0.0e+00 1248.8 876 73.2
Gorai.006G180300 Gossypium raimondii HOM05D001476 ORTHO05D006149 0.0e+00 1246.1 846 74.7
FvH4_6g12060 Fragaria vesca HOM05D001476 ORTHO05D006149 0.0e+00 1243.4 863 73.6
Eucgr.B02781 Eucalyptus grandis HOM05D001476 ORTHO05D006149 0.0e+00 1240.3 855 73.8
Sed0003764 Sechium edule HOM05D001476 ORTHO05D006149 0.0e+00 1238.8 849 74.1
Aqoxy1G00720 Aquilegia oxysepala HOM05D001476 ORTHO05D006149 0.0e+00 1237.2 821 75.6
Gorai.012G111700 Gossypium raimondii HOM05D001476 ORTHO05D006149 0.0e+00 1231.9 839 73.8
ClCG04G007260 Citrullus lanatus HOM05D001476 ORTHO05D006149 0.0e+00 1230.7 847 74.1
MELO3C003223.2 Cucumis melo HOM05D001476 ORTHO05D006149 0.0e+00 1228.0 847 74.4
CsaV3_4G025980 Cucumis sativus L. HOM05D001476 ORTHO05D006149 0.0e+00 1226.5 852 73.5
Gohir.D04G128600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1221.5 839 73.4
Nitab4.5_0000008g0700 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1217.2 862 72.3
Nitab4.5_0011723g0020 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1215.7 862 71.9
Nitab4.5_0004912g0100 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1211.1 867 71.0
Cc06_g01690 Coffea canephora HOM05D001476 ORTHO05D006149 0.0e+00 1210.7 854 70.4
CANSAT35G0098 Cannabis sativa HOM05D001476 ORTHO05D006149 0.0e+00 1209.1 861 72.4
Atru.chr8.2151 Acer truncatum HOM05D001476 ORTHO05D006149 0.0e+00 1207.6 907 69.2
THA.LOC104816221 Tarenaya hassleriana HOM05D001476 ORTHO05D006149 0.0e+00 1203.7 927 67.5
PSO210G1670 Papaver somniferum HOM05D001476 ORTHO05D006149 0.0e+00 1199.9 823 74.0
FAN05G2912 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1199.1 863 71.7
FAN14G1008 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1195.6 878 71.1
FAN14G2619 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1194.5 878 71.0
Migut.J00228 Erythranthe guttata HOM05D001476 ORTHO05D006149 0.0e+00 1194.1 874 70.1
FAN09G2729 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1194.1 878 71.0
PSO832G0213 Papaver somniferum HOM05D001476 ORTHO05D006149 0.0e+00 1192.9 823 74.0
HanXRQChr16g0507821 Helianthus annuus HOM05D001476 ORTHO05D006149 0.0e+00 1190.6 868 71.1
MD04G1146700 Malus domestica HOM05D001476 ORTHO05D006149 0.0e+00 1190.6 864 72.9
SGA_v2.0_scaffold22G09908 Striga asiatica HOM05D001476 ORTHO05D006149 0.0e+00 1190.3 865 70.2
FAN02G1993 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1188.7 863 71.5
Thhalv10020022m.g Eutrema salsugineum HOM05D001476 ORTHO05D006149 0.0e+00 1187.9 890 69.8
Rhsim05G0205700 Rhododendron simsii HOM05D001476 ORTHO05D006149 0.0e+00 1187.9 842 72.3
Sed0007041 Sechium edule HOM05D001476 ORTHO05D006149 0.0e+00 1187.2 910 67.7
BcaC09g48009 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1186.4 885 69.7
Sopen10g034520 Solanum pennellii HOM05D001476 ORTHO05D006149 0.0e+00 1185.6 867 69.9
ECA236G3430 Erigeron canadensis HOM05D001476 ORTHO05D006149 0.0e+00 1184.1 828 72.5
Solyc09g013130.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 0.0e+00 1183.7 892 69.1
Carub.0003s0826 Capsella rubella HOM05D001476 ORTHO05D006149 0.0e+00 1183.3 890 69.4
SGA_v2.0_scaffold85G26765 Striga asiatica HOM05D001476 ORTHO05D006149 0.0e+00 1182.9 867 70.8
Sp3g07550 Schrenkiella parvula HOM05D001476 ORTHO05D006149 0.0e+00 1182.2 879 70.0
AT3G09090 Arabidopsis thaliana HOM05D001476 ORTHO05D006149 0.0e+00 1180.6 890 69.4
CARHR083470 Cardamine hirsuta HOM05D001476 ORTHO05D006149 0.0e+00 1179.1 896 68.6
Sopen09g006990 Solanum pennellii HOM05D001476 ORTHO05D006149 0.0e+00 1176.8 892 68.8
Peaxi162Scf00141g00813 Petunia axillaris HOM05D001476 ORTHO05D006149 0.0e+00 1174.5 819 72.9
BolC1t05473H Brassica oleracea HOM05D001476 ORTHO05D006149 0.0e+00 1172.1 895 68.9
AL3G20170 Arabidopsis lyrata HOM05D001476 ORTHO05D006149 0.0e+00 1169.8 902 67.8
MD12G1159900 Malus domestica HOM05D001476 ORTHO05D006149 0.0e+00 1169.8 893 69.9
Sc24g0002110 Simmondsia chinensis HOM05D001476 ORTHO05D006149 0.0e+00 1169.5 905 67.2
BcaC09g48054 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1168.7 899 67.9
Peaxi162Scf00009g02022 Petunia axillaris HOM05D001476 ORTHO05D006149 0.0e+00 1168.7 875 68.8
CAN.G355.19 Capsicum annuum HOM05D001476 ORTHO05D006149 0.0e+00 1164.4 879 68.5
BraA01t04314Z Brassica rapa HOM05D001476 ORTHO05D006149 0.0e+00 1161.7 892 68.3
PGSC0003DMG400011017 Solanum tuberosum HOM05D001476 ORTHO05D006149 0.0e+00 1159.8 862 69.1
Oeu004614.2 Olea europaea HOM05D001476 ORTHO05D006149 0.0e+00 1158.3 867 69.4
EL10Ac5g11563 Beta vulgaris HOM05D001476 ORTHO05D006149 0.0e+00 1157.9 929 66.3
Cfa017258 Carpinus fangiana HOM05D001476 ORTHO05D002681 0.0e+00 1157.5 860 70.2
SalBow5G4659 Salvia bowleyana HOM05D001476 ORTHO05D006149 0.0e+00 1156.4 911 66.0
Nitab4.5_0000652g0160 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1156.0 823 71.6
C05p58820 Brassica napus HOM05D001476 ORTHO05D006149 0.0e+00 1149.4 902 67.4
DCAR_024038 Daucus carota HOM05D001476 ORTHO05D006149 0.0e+00 1149.0 858 69.3
A05p39780 Brassica napus HOM05D001476 ORTHO05D006149 0.0e+00 1145.2 901 67.6
HPP92_018041 Vanilla planifolia HOM05D001476 ORTHO05D006149 0.0e+00 1143.6 857 68.4
CDE04G3748 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 0.0e+00 1138.3 846 69.5
BraA05t22762Z Brassica rapa HOM05D001476 ORTHO05D006149 0.0e+00 1135.9 917 66.3
Aa31LG3G1620 Aethionema arabicum HOM05D001476 ORTHO05D006149 0.0e+00 1133.2 899 65.7
ATR0618G171 Amborella trichopoda HOM05D001476 ORTHO05D006149 0.0e+00 1124.8 800 72.0
PGSC0003DMG400020350 Solanum tuberosum HOM05D001476 ORTHO05D006149 0.0e+00 1121.3 1000 60.4
Rhsim05G0205800 Rhododendron simsii HOM05D001476 ORTHO05D006149 0.0e+00 1114.8 891 64.9
Lj3A957T35 Lonicera japonica HOM05D001476 ORTHO05D006149 0.0e+00 1113.6 937 64.4
Duzib106G0695 Durio zibethinus HOM05D001476 ORTHO05D006149 0.0e+00 1112.1 831 67.6
Lsat_1_v5_gn_8_99901 Lactuca sativa HOM05D001476 ORTHO05D006149 0.0e+00 1104.7 811 70.3
BcaC05g29640 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1099.7 943 63.5
Zm00001eb063130 Zea mays HOM05D001476 ORTHO05D006149 0.0e+00 1096.3 841 66.6
unitig_699.g19385 Utricularia gibba HOM05D001476 ORTHO05D006149 0.0e+00 1083.6 841 67.1
Gohir.A04G088225 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1076.2 733 72.0
Os03g0825700 Oryza sativa ssp. japonica HOM05D001476 ORTHO05D006149 1.2e-310 1069.7 827 66.5
vmacro20235 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 3.7e-309 1064.7 815 66.3
CDE03G0023 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 2.7e-304 1048.5 835 63.8
Oeu044363.1 Olea europaea HOM05D001476 ORTHO05D006149 1.7e-293 1012.7 847 62.7
Ah.11g045320 Amaranthus hybridus HOM05D001476 ORTHO05D006149 7.0e-284 980.7 893 60.9
Solyc10g085060.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 5.5e-281 971.1 717 67.8
RcHm_v2.0_Chr3g0463911 Rosa chinensis HOM05D001476 ORTHO05D006149 8.3e-277 957.2 719 70.7
Sabra06G0073800 Salix brachista HOM05D001476 ORTHO05D002681 2.0e-270 936.0 854 61.0
Lsat_1_v5_gn_0_44361 Lactuca sativa HOM05D001476 ORTHO05D006149 4.4e-270 934.9 702 67.1
Pp3c20_710 Physcomitrium patens HOM05D001476 ORTHO05D006149 2.9e-269 932.2 826 57.4
Sabra16G0107400 Salix brachista HOM05D001476 ORTHO05D006149 4.9e-269 931.4 961 56.4
MSTRG.5600 Avicennia marina HOM05D001476 ORTHO05D006149 5.4e-268 927.9 696 69.1
CAN.G1297.2 Capsicum annuum HOM05D001476 ORTHO05D006149 4.0e-263 911.8 593 74.5
Mapoly0103s0063 Marchantia polymorpha HOM05D001476 ORTHO05D006149 1.9e-257 892.9 903 54.0
SMO145G0033 Selaginella moellendorffii HOM05D001476 ORTHO05D006149 1.2e-251 873.6 849 55.1
TAR636G2437 Trochodendron aralioides HOM05D001476 ORTHO05D006149 1.7e-250 869.8 503 81.5
SEGI_02222 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 2.3e-234 816.2 706 62.0
TPR.G6686 Trifolium pratense HOM05D001476 ORTHO05D006149 4.1e-207 725.7 372 93.0
AagrBONN_evm.TU.Sc2ySwM_369.563 Anthoceros agrestis HOM05D001476 ORTHO05D006149 4.4e-185 652.5 616 58.0
SHI12782 Sapria himalayana HOM05D001476 ORTHO05D006149 3.7e-184 649.4 518 68.5
AUR62043525 Chenopodium quinoa HOM05D001476 ORTHO05D006149 8.9e-162 575.1 382 71.5
AUR62043102 Chenopodium quinoa HOM05D001476 ORTHO05D006149 3.4e-161 573.2 533 61.5
COL.COLO4_14599 Corchorus olitorius HOM05D001476 ORTHO05D006149 1.3e-157 561.2 350 76.6
vmacro17486 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 1.2e-155 554.7 464 62.9
AUR62044509 Chenopodium quinoa HOM05D001476 ORTHO05D006149 3.6e-155 553.1 339 75.5
AUR62043103 Chenopodium quinoa HOM05D001476 ORTHO05D006149 2.9e-152 543.5 359 71.6
CBR_g8542 Chara braunii HOM05D001476 ORTHO05D006149 4.3e-140 503.1 726 43.7
MCO10G178 Micromonas commoda HOM05D001476 ORTHO05D006149 4.9e-136 489.6 841 37.6
Cre04.g214097 Chlamydomonas reinhardtii HOM05D001476 ORTHO05D006149 4.9e-128 463.0 979 34.8
SHI12784 Sapria himalayana HOM05D001476 ORTHO05D006149 1.0e-117 428.7 298 69.8
COL.COLO4_14600 Corchorus olitorius HOM05D001476 ORTHO05D006149 5.6e-116 422.9 475 54.5
AUR62043524 Chenopodium quinoa HOM05D001476 ORTHO05D006149 2.4e-114 417.5 443 57.3
BcaC09g47968 Brassica carinata HOM05D001476 ORTHO05D006149 1.5e-105 388.3 297 65.3
PRCOL_00002974 Prasinoderma coloniale HOM05D001476 ORTHO05D006149 6.0e-102 376.3 1009 30.4
Actinidia29132 Actinidia chinensis HOM05D001476 ORTHO05D006149 2.4e-98 364.4 594 40.6
TAR636G0462 Trochodendron aralioides HOM05D001476 ORTHO05D006149 8.7e-93 345.9 331 63.4
RcHm_v2.0_Chr3g0463901 Rosa chinensis HOM05D001476 ORTHO05D006149 3.7e-75 287.3 166 81.3
Dinv37085 Davidia involucrata HOM05D001476 ORTHO05D002681 2.8e-51 208.0 326 41.1
BolC5t34534H Brassica oleracea HOM05D001476 ORTHO05D002681 3.3e-47 194.5 142 81.0
Hund31411 Selenicereus undatus HOM05D001476 ORTHO05D006149 4.9e-43 180.6 102 83.3
vmacro17485 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 4.4e-36 157.5 105 73.3
SEGI_09667 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 5.4e-34 150.6 107 65.4
MSTRG.19033 Avicennia marina HOM05D001476 ORTHO05D031643 2.5e-31 141.7 88 72.7
Rhsim09G0090000 Rhododendron simsii HOM05D001476 ORTHO05D034934 3.1e-21 108.2 77 67.5
TAR381G0471 Trochodendron aralioides HOM05D000141 ORTHO05D000780 6.8e-21 107.1 96 62.5
TAR629G0215 Trochodendron aralioides HOM05D000393 ORTHO05D000275 6.8e-21 107.1 61 80.3
FAN23G1187 Fragaria x ananassa HOM05D001476 ORTHO05D031643 1.4e-18 99.4 60 73.3
TAR626G1231 Trochodendron aralioides HOM05D000393 ORTHO05D000275 9.6e-15 86.7 57 70.2
TAR369G0367 Trochodendron aralioides HOM05D001309 ORTHO05D000385 1.4e-13 82.8 55 70.9
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.6e-12 78.6 68 55.9
TAR636G0366 Trochodendron aralioides HOM05D001476 ORTHO05D006149 1.3e-11 76.3 53 73.6
FAN19G0609 Fragaria x ananassa HOM05D014108 ORTHO05D015280 6.4e-11 73.9 68 54.4
GSVIVG01021923001 Vitis vinifera HOM05D001476 ORTHO05D006149 1.9e-10 72.4 69 52.2
Rhsim05G0112000 Rhododendron simsii HOM05D047264 ORTHO05D021376 7.1e-10 70.5 58 60.3
MELO3C011527.2 Cucumis melo HOM05D001476 ORTHO05D034934 2.1e-09 68.9 40 70.0
TWI53G1805 Tripterygium wilfordii HOM05D001476 ORTHO05D031643 1.5e-07 62.8 52 57.7
Rhsim06G0121600 Rhododendron simsii HOM05D001476 ORTHO05D034934 5.6e-07 60.8 47 63.8


User provided reference genes

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