Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_23623_v3 Cicer arietinum L. HOM05D004014 ORTHO05D005890 7.0e-143 510.8 288 100.0
Ca_11704_v3 Cicer arietinum L. HOM05D004014 ORTHO05D148986 7.6e-97 357.8 288 69.4
Ca_23300_v3 Cicer arietinum L. HOM05D004014 ORTHO05D005890 1.0e-77 294.3 249 63.5
TPR.G24219 Trifolium pratense HOM05D004014 ORTHO05D005890 3.9e-77 292.4 249 61.4
Psat4g193640 Pisum sativum HOM05D004014 ORTHO05D005890 5.1e-77 292.0 249 61.4
Medtr8g015660 Medicago truncatula HOM05D004014 ORTHO05D005890 1.9e-76 290.0 249 61.4
Phvul.010G141700 Phaseolus vulgaris HOM05D004014 ORTHO05D005890 2.5e-76 289.7 250 62.4
arahy.Tifrunner.gnm1.ann1.ZVXK34 Arachis hypogaea HOM05D004014 ORTHO05D005890 7.4e-76 288.1 249 61.0
VMungo0331G1129 Vigna mungo HOM05D004014 ORTHO05D005890 7.4e-76 288.1 249 61.8
CiPaw.02G141900 Carya illinoinensis HOM05D004014 ORTHO05D005890 1.6e-75 287.0 249 59.4
arahy.Tifrunner.gnm1.ann1.SBEJ10 Arachis hypogaea HOM05D004014 ORTHO05D005890 2.2e-75 286.6 249 61.0
Glyma.08G195900 Glycine max HOM05D004014 ORTHO05D005890 2.8e-75 286.2 249 61.4
Glyma.07G012300 Glycine max HOM05D004014 ORTHO05D005890 4.8e-75 285.4 249 61.4
Thecc.06G108100 Theobroma cacao HOM05D004014 ORTHO05D005890 8.2e-75 284.6 250 60.4
Ciclev10025482m.g Citrus clementina HOM05D004014 ORTHO05D005890 1.1e-74 284.3 249 58.6
Lalb_Chr25g0280531 Lupinus albus HOM05D004014 ORTHO05D005890 1.4e-74 283.9 249 60.6
COL.COLO4_30610 Corchorus olitorius HOM05D004014 ORTHO05D005890 2.4e-74 283.1 249 59.8
Lj3g0023335 Lotus japonicus HOM05D004014 ORTHO05D005890 4.1e-74 282.3 250 60.8
CiPaw.01G227100 Carya illinoinensis HOM05D004014 ORTHO05D005890 5.3e-74 282.0 250 59.2
QL05p015866 Quercus lobata HOM05D004014 ORTHO05D005890 6.9e-74 281.6 250 59.6
Gohir.D09G080501 Gossypium hirsutum HOM05D004014 ORTHO05D005890 1.2e-73 280.8 250 59.2
Gohir.A09G080500 Gossypium hirsutum HOM05D004014 ORTHO05D005890 1.5e-73 280.4 250 59.2
Gorai.006G096100 Gossypium raimondii HOM05D004014 ORTHO05D005890 1.5e-73 280.4 250 59.2
GSVIVG01016888001 Vitis vinifera HOM05D004014 ORTHO05D005890 1.5e-73 280.4 249 59.8
CSS0031715 Camellia sinensis var. sinensis HOM05D004014 ORTHO05D005890 4.5e-73 278.9 249 57.8
Duzib160G0604 Durio zibethinus HOM05D004014 ORTHO05D005890 7.7e-73 278.1 250 59.2
Atru.chr1.3637 Acer truncatum HOM05D004014 ORTHO05D005890 1.3e-72 277.3 249 57.4
Atru.chr8.1187 Acer truncatum HOM05D004014 ORTHO05D005890 1.3e-72 277.3 249 57.4
Dinv37931 Davidia involucrata HOM05D004014 ORTHO05D005890 1.3e-72 277.3 249 57.4
RcHm_v2.0_Chr2g0142531 Rosa chinensis HOM05D004014 ORTHO05D005890 1.3e-72 277.3 249 58.6
PGR102G0116 Punica granatum HOM05D004014 ORTHO05D005890 3.8e-72 275.8 249 58.6
Lalb_Chr04g0263081 Lupinus albus HOM05D004014 ORTHO05D005890 5.0e-72 275.4 250 59.6
Dinv30396 Davidia involucrata HOM05D004014 ORTHO05D005890 6.5e-72 275.0 249 57.4
Actinidia39122 Actinidia chinensis HOM05D004014 ORTHO05D005890 8.5e-72 274.6 250 57.6
AUR62037625 Chenopodium quinoa HOM05D004014 ORTHO05D005890 8.5e-72 274.6 248 56.9
Hund00756 Selenicereus undatus HOM05D004014 ORTHO05D005890 8.5e-72 274.6 249 57.8
CSS0027279 Camellia sinensis var. sinensis HOM05D004014 ORTHO05D005890 1.1e-71 274.2 249 56.6
Nn8g38926 Nelumbo nucifera HOM05D004014 ORTHO05D005890 1.1e-71 274.2 249 57.4
Sc12g0009850 Simmondsia chinensis HOM05D004014 ORTHO05D005890 1.9e-71 273.5 249 56.6
TAR626G0060 Trochodendron aralioides HOM05D004014 ORTHO05D005890 3.2e-71 272.7 249 56.6
ClCG09G000550 Citrullus lanatus HOM05D004014 ORTHO05D005890 7.2e-71 271.6 248 58.1
Prupe.3G052400 Prunus persica HOM05D004014 ORTHO05D005890 9.4e-71 271.2 249 57.4
MD17G1176500 Malus domestica HOM05D004014 ORTHO05D005890 1.2e-70 270.8 249 57.4
AUR62041068 Chenopodium quinoa HOM05D004014 ORTHO05D005890 1.6e-70 270.4 249 56.2
MD09G1195900 Malus domestica HOM05D004014 ORTHO05D005890 1.6e-70 270.4 249 57.4
Manes.04G137700 Manihot esculenta HOM05D004014 ORTHO05D005890 1.6e-70 270.4 247 59.1
vmacro16995 Vaccinium macrocarpon HOM05D004014 ORTHO05D005890 1.6e-70 270.4 249 56.6
ECA232G4630 Erigeron canadensis HOM05D004014 ORTHO05D005890 2.1e-70 270.0 249 55.8
FAN14G2620 Fragaria x ananassa HOM05D004014 ORTHO05D005890 2.1e-70 270.0 249 58.6
HanXRQChr05g0140121 Helianthus annuus HOM05D004014 ORTHO05D005890 3.6e-70 269.2 249 55.0
DCAR_007610 Daucus carota HOM05D004014 ORTHO05D005890 4.6e-70 268.9 249 56.6
FAN05G5071 Fragaria x ananassa HOM05D004014 ORTHO05D005890 4.6e-70 268.9 249 58.2
Lsat_1_v5_gn_4_95921 Lactuca sativa HOM05D004014 ORTHO05D005890 4.6e-70 268.9 249 55.4
Sed0015765 Sechium edule HOM05D004014 ORTHO05D005890 4.6e-70 268.9 248 57.7
Haze_15924 Corylus avellana HOM05D004014 ORTHO05D005890 6.1e-70 268.5 265 55.1
FvH4_6g32980 Fragaria vesca HOM05D004014 ORTHO05D005890 6.1e-70 268.5 249 58.2
HanXRQChr09g0276341 Helianthus annuus HOM05D004014 ORTHO05D005890 6.1e-70 268.5 249 55.0
TWI79G1365 Tripterygium wilfordii HOM05D004014 ORTHO05D005890 6.1e-70 268.5 249 57.4
CANSAT56G3696 Cannabis sativa HOM05D004014 ORTHO05D005890 7.9e-70 268.1 249 55.8
Aa31LG8G7980 Aethionema arabicum HOM05D004014 ORTHO05D005890 1.0e-69 267.7 228 60.5
FAN02G0480 Fragaria x ananassa HOM05D004014 ORTHO05D005890 1.0e-69 267.7 249 58.2
THA.LOC104817933 Tarenaya hassleriana HOM05D004014 ORTHO05D005890 1.0e-69 267.7 249 57.8
CsaV3_7G034900 Cucumis sativus L. HOM05D004014 ORTHO05D005890 1.4e-69 267.3 248 57.3
Actinidia09020 Actinidia chinensis HOM05D004014 ORTHO05D005890 1.8e-69 266.9 250 57.6
Lj5A49T39 Lonicera japonica HOM05D004014 ORTHO05D005890 1.8e-69 266.9 249 55.4
Oeu002520.1 Olea europaea HOM05D004014 ORTHO05D005890 1.8e-69 266.9 224 60.3
EL10Ac2g03344 Beta vulgaris HOM05D004014 ORTHO05D005890 2.3e-69 266.5 251 56.2
DCAR_007611 Daucus carota HOM05D004014 ORTHO05D005890 2.3e-69 266.5 249 56.2
Manes.11G028700 Manihot esculenta HOM05D004014 ORTHO05D005890 2.3e-69 266.5 249 58.2
THA.LOC104805917 Tarenaya hassleriana HOM05D004014 ORTHO05D005890 2.3e-69 266.5 249 57.4
Thhalv10011383m.g Eutrema salsugineum HOM05D004014 ORTHO05D005890 3.0e-69 266.2 239 59.0
Sabra03G0029500 Salix brachista HOM05D004014 ORTHO05D005890 3.0e-69 266.2 249 58.2
Sabra01G0156400 Salix brachista HOM05D004014 ORTHO05D005890 3.9e-69 265.8 255 56.5
Eucgr.F03104 Eucalyptus grandis HOM05D004014 ORTHO05D005890 6.7e-69 265.0 249 56.2
Potri.001G197400 Populus trichocarpa HOM05D004014 ORTHO05D005890 6.7e-69 265.0 250 58.4
Potri.003G033700 Populus trichocarpa HOM05D004014 ORTHO05D005890 6.7e-69 265.0 250 58.4
Lsat_1_v5_gn_1_36421 Lactuca sativa HOM05D004014 ORTHO05D005890 1.1e-68 264.2 249 54.6
FAN09G0688 Fragaria x ananassa HOM05D004014 ORTHO05D005890 1.5e-68 263.8 249 57.4
Peaxi162Scf00177g00215 Petunia axillaris HOM05D004014 ORTHO05D005890 2.0e-68 263.5 247 55.5
Sed0015232 Sechium edule HOM05D004014 ORTHO05D005890 2.6e-68 263.1 249 56.2
Cc04_g02170 Coffea canephora HOM05D004014 ORTHO05D005890 3.3e-68 262.7 249 55.4
MELO3C024402.2 Cucumis melo HOM05D004014 ORTHO05D005890 4.4e-68 262.3 248 56.5
CAN.G12.3 Capsicum annuum HOM05D004014 ORTHO05D005890 9.7e-68 261.2 249 54.2
Solyc12g044740.2 Solanum lycopersicum HOM05D004014 ORTHO05D005890 1.7e-67 260.4 249 54.2
Sopen12g022890 Solanum pennellii HOM05D004014 ORTHO05D005890 1.7e-67 260.4 249 54.2
Nitab4.5_0003218g0070 Nicotiana tabacum HOM05D004014 ORTHO05D005890 2.2e-67 260.0 249 54.6
A08p02550 Brassica napus HOM05D004014 ORTHO05D005890 3.7e-67 259.2 250 56.8
BraA08t32295Z Brassica rapa HOM05D004014 ORTHO05D005890 3.7e-67 259.2 250 56.8
Nitab4.5_0006642g0010 Nicotiana tabacum HOM05D004014 ORTHO05D005890 3.7e-67 259.2 249 54.2
PSO832G1047 Papaver somniferum HOM05D004014 ORTHO05D005890 3.7e-67 259.2 249 55.0
Oeu039979.1 Olea europaea HOM05D004014 ORTHO05D005890 8.2e-67 258.1 249 55.8
BcaC01g01290 Brassica carinata HOM05D004014 ORTHO05D005890 1.1e-66 257.7 250 56.4
C03p90260 Brassica napus HOM05D004014 ORTHO05D005890 1.1e-66 257.7 250 56.4
BolC3t21348H Brassica oleracea HOM05D004014 ORTHO05D005890 1.1e-66 257.7 250 56.4
Carub.0001s4058 Capsella rubella HOM05D004014 ORTHO05D005890 1.1e-66 257.7 250 56.4
PSO063G2767 Papaver somniferum HOM05D004014 ORTHO05D005890 1.1e-66 257.7 249 54.6
AL1G59650 Arabidopsis lyrata HOM05D004014 ORTHO05D005890 3.1e-66 256.1 250 56.4
BcaC08g43331 Brassica carinata HOM05D004014 ORTHO05D005890 4.1e-66 255.8 250 55.6
CARHR041870 Cardamine hirsuta HOM05D004014 ORTHO05D005890 4.1e-66 255.8 250 56.8
ATR0789G134 Amborella trichopoda HOM05D004014 ORTHO05D005890 5.3e-66 255.4 250 55.6
CDE07G0617 Ceratophyllum demersum HOM05D004014 ORTHO05D005890 5.3e-66 255.4 249 54.2
HPP92_005519 Vanilla planifolia HOM05D004014 ORTHO05D005890 6.9e-66 255.0 248 54.0
BcaB07g33627 Brassica carinata HOM05D004014 ORTHO05D005890 9.1e-66 254.6 250 55.6
Rhsim12G0204700 Rhododendron simsii HOM05D004014 ORTHO05D005890 9.1e-66 254.6 309 48.2
AT1G51710 Arabidopsis thaliana HOM05D004014 ORTHO05D005890 1.2e-65 254.2 250 56.0
Zm00001eb356540 Zea mays HOM05D004014 ORTHO05D005890 2.0e-65 253.4 250 54.0
A06p02300 Brassica napus HOM05D004014 ORTHO05D005890 2.6e-65 253.1 250 55.2
Zm00001eb162410 Zea mays HOM05D004014 ORTHO05D005890 2.6e-65 253.1 250 54.0
BraA06t23436Z Brassica rapa HOM05D004014 ORTHO05D005890 3.4e-65 252.7 250 54.8
C06p06860 Brassica napus HOM05D004014 ORTHO05D005890 1.0e-64 251.1 250 54.8
BolC6t35793H Brassica oleracea HOM05D004014 ORTHO05D005890 1.0e-64 251.1 250 54.8
AL3G35320 Arabidopsis lyrata HOM05D004014 ORTHO05D005890 1.3e-64 250.8 250 56.4
SGA_v2.0_scaffold71G23744 Striga asiatica HOM05D004014 ORTHO05D005890 1.3e-64 250.8 248 54.4
Aqoxy7G01294 Aquilegia oxysepala HOM05D004014 ORTHO05D005890 2.2e-64 250.0 277 51.6
Os01g0550100 Oryza sativa ssp. japonica HOM05D004014 ORTHO05D005890 2.2e-64 250.0 249 54.2
unitig_37.g12991 Utricularia gibba HOM05D004014 ORTHO05D005890 3.8e-64 249.2 251 54.6
AT3G21280 Arabidopsis thaliana HOM05D004014 ORTHO05D005890 5.0e-64 248.8 249 55.4
Migut.I01003 Erythranthe guttata HOM05D004014 ORTHO05D005890 6.5e-64 248.4 250 53.2
Thhalv10020636m.g Eutrema salsugineum HOM05D004014 ORTHO05D005890 1.1e-63 247.7 250 55.2
MSTRG.22603 Avicennia marina HOM05D004014 ORTHO05D005890 1.9e-63 246.9 250 52.8
SalBow6G0444 Salvia bowleyana HOM05D004014 ORTHO05D005890 2.1e-62 243.4 250 52.0
SGA_v2.0_scaffold45G16993 Striga asiatica HOM05D004014 ORTHO05D005890 3.0e-61 239.6 249 52.2
Gohir.A10G062050 Gossypium hirsutum HOM05D004014 ORTHO05D005890 6.5e-56 221.9 283 46.6
SMO307G0086 Selaginella moellendorffii HOM05D004014 ORTHO05D005890 1.6e-54 217.2 276 46.4
Pp3c7_7460 Physcomitrium patens HOM05D004014 ORTHO05D005890 1.4e-53 214.2 253 50.6
C01p50000 Brassica napus HOM05D004014 ORTHO05D005890 2.0e-52 210.3 240 48.8
BcaC09g48419 Brassica carinata HOM05D004014 ORTHO05D005890 7.0e-50 201.8 256 45.3
BolC1t04957H Brassica oleracea HOM05D004014 ORTHO05D005890 1.6e-49 200.7 254 46.1
Sp3g19320 Schrenkiella parvula HOM05D004014 ORTHO05D005890 6.5e-48 195.3 246 47.2
AagrBONN_evm.TU.Sc2ySwM_117.798 Anthoceros agrestis HOM05D004014 ORTHO05D005890 1.9e-47 193.7 251 44.2
Mapoly0134s0030 Marchantia polymorpha HOM05D004014 ORTHO05D005890 3.2e-47 193.0 253 45.5
CBR_g3328 Chara braunii HOM05D004014 ORTHO05D005890 1.3e-43 181.0 245 42.4
Cpa.g.sc131.36 Carica papaya HOM05D004014 ORTHO05D005890 2.4e-42 176.8 131 64.9
Duzib192G0196 Durio zibethinus HOM05D004014 ORTHO05D005890 7.0e-42 175.3 250 45.2
Ca_14199_v3 Cicer arietinum L. HOM05D004014 ORTHO05D149221 2.2e-40 170.2 120 75.8
PSO832G2035 Papaver somniferum HOM05D004014 ORTHO05D005890 1.9e-39 167.2 241 41.5
Aqoxy3G00091 Aquilegia oxysepala HOM05D004014 ORTHO05D031250 5.4e-34 149.1 267 35.2
Cre17.g726050 Chlamydomonas reinhardtii HOM05D004014 ORTHO05D005890 4.5e-33 146.0 248 37.5
Sp1g38350 Schrenkiella parvula HOM05D004014 ORTHO05D005890 7.8e-33 145.2 198 46.0
PRCOL_00000017 Prasinoderma coloniale HOM05D004014 ORTHO05D005890 3.8e-32 142.9 254 36.6
Haze_26391 Corylus avellana HOM05D004014 ORTHO05D005890 1.0e-29 134.8 280 33.2
MBI04_g06225_MAGBIO Magnolia biondii HOM05D004014 ORTHO05D005890 4.0e-29 132.9 238 39.1
QL05p015273 Quercus lobata HOM05D004014 ORTHO05D005890 2.4e-26 123.6 83 71.1
Carub.0003s2128 Capsella rubella HOM05D004014 ORTHO05D018183 2.0e-25 120.6 83 68.7
AUR62007854 Chenopodium quinoa HOM05D011798 ORTHO05D014352 3.5e-25 119.8 107 53.3
Ah.10g033580 Amaranthus hybridus HOM05D004014 ORTHO05D005890 4.6e-25 119.4 80 70.0
MCO05G115 Micromonas commoda HOM05D004014 ORTHO05D005890 2.5e-23 113.6 247 33.6
Ah.10g033570 Amaranthus hybridus HOM05D004014 ORTHO05D005890 2.8e-22 110.2 73 65.8
SEGI_22647 Sequoiadendron giganteum HOM05D004014 ORTHO05D005890 6.2e-22 109.0 74 66.2
Rhsim12G0192600 Rhododendron simsii HOM05D004014 ORTHO05D005890 1.8e-21 107.5 89 61.8
Lsat_1_v5_gn_1_44701 Lactuca sativa HOM05D004014 ORTHO05D005890 2.0e-20 104.0 72 62.5
PSO013G0267 Papaver somniferum HOM05D004014 ORTHO05D303417 2.0e-20 104.0 112 47.3
Pp3c11_21370 Physcomitrium patens HOM05D004014 ORTHO05D005890 2.3e-13 80.5 77 53.2
Cpa.g.sc131.37 Carica papaya HOM05D004014 ORTHO05D005890 8.9e-13 78.6 49 69.4
Carub.0003s2129 Capsella rubella HOM05D004014 ORTHO05D005890 1.3e-08 64.7 51 60.8
Aqoxy6G02681 Aquilegia oxysepala HOM05D004014 ORTHO05D005890 8.6e-08 62.0 73 47.9
AL6G44620 Arabidopsis lyrata HOM05D001091 ORTHO05D001020 4.3e-07 59.7 117 36.8
Sp6g06860 Schrenkiella parvula HOM05D001091 ORTHO05D001020 1.6e-06 57.8 118 35.6
AT4G10570 Arabidopsis thaliana HOM05D001091 ORTHO05D001020 2.1e-06 57.4 139 33.8
BcaB06g28879 Brassica carinata HOM05D001091 ORTHO05D001020 2.1e-06 57.4 242 28.1
AagrBONN_evm.TU.Sc2ySwM_228.3609 Anthoceros agrestis HOM05D000279 ORTHO05D016536 2.8e-06 57.0 261 23.0
BcaB01g02746 Brassica carinata HOM05D001091 ORTHO05D001020 2.8e-06 57.0 119 37.8
A03p29030 Brassica napus HOM05D001091 ORTHO05D001020 2.8e-06 57.0 119 37.8
C03p35090 Brassica napus HOM05D001091 ORTHO05D001020 2.8e-06 57.0 119 37.8
BraA03t12099Z Brassica rapa HOM05D001091 ORTHO05D001020 2.8e-06 57.0 119 37.8
AT4G10590 Arabidopsis thaliana HOM05D001091 ORTHO05D001020 3.6e-06 56.6 118 36.4
Carub.0006s2935 Capsella rubella HOM05D001091 ORTHO05D001020 6.2e-06 55.8 119 37.8
MSTRG.24869 Avicennia marina HOM05D001091 ORTHO05D001020 8.1e-06 55.5 132 34.8
BcaC01g04671 Brassica carinata HOM05D001091 ORTHO05D001020 8.1e-06 55.5 119 37.0
BolC3t15820H Brassica oleracea HOM05D001091 ORTHO05D001020 8.1e-06 55.5 119 37.0
Lalb_Chr06g0168601 Lupinus albus HOM05D001091 ORTHO05D001020 8.1e-06 55.5 141 29.8
THA.LOC104815366 Tarenaya hassleriana HOM05D001091 ORTHO05D001020 8.1e-06 55.5 118 35.6


User provided reference genes

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