Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_23562_v3 Cicer arietinum L. HOM05D005854 ORTHO05D007175 6.1e-127 457.6 248 100.0
Ca_25392_v3 Cicer arietinum L. HOM05D005854 ORTHO05D007175 7.7e-122 440.7 248 93.5
Psat4g213880 Pisum sativum HOM05D005854 ORTHO05D007175 2.6e-109 399.1 249 85.1
TPR.G21281 Trifolium pratense HOM05D005854 ORTHO05D007175 3.7e-108 395.2 248 83.1
Medtr8g023960 Medicago truncatula HOM05D005854 ORTHO05D007175 2.0e-98 362.8 248 77.4
Glyma.07G060800 Glycine max HOM05D005854 ORTHO05D007175 7.5e-93 344.4 249 75.5
Lj3g0026359 Lotus japonicus HOM05D005854 ORTHO05D007175 4.1e-91 338.6 250 76.0
Phvul.010G108400 Phaseolus vulgaris HOM05D005854 ORTHO05D007175 3.5e-90 335.5 250 72.8
arahy.Tifrunner.gnm1.ann1.788ENG Arachis hypogaea HOM05D005854 ORTHO05D007175 4.5e-90 335.1 250 72.4
arahy.Tifrunner.gnm1.ann1.GVN9XJ Arachis hypogaea HOM05D005854 ORTHO05D007175 5.9e-90 334.7 250 72.4
VMungo0331G0610 Vigna mungo HOM05D005854 ORTHO05D007175 5.9e-90 334.7 249 73.1
Glyma.16G029400 Glycine max HOM05D005854 ORTHO05D007175 2.3e-89 332.8 250 73.6
Lalb_Chr10g0100131 Lupinus albus HOM05D005854 ORTHO05D007175 3.8e-89 332.0 251 72.9
CANSAT54G0206 Cannabis sativa HOM05D005854 ORTHO05D007175 6.4e-84 314.7 250 70.0
Thecc.01G121600 Theobroma cacao HOM05D005854 ORTHO05D007175 9.5e-80 300.8 244 66.4
RcHm_v2.0_Chr3g0451741 Rosa chinensis HOM05D005854 ORTHO05D007175 8.0e-79 297.7 250 65.2
FvH4_6g03270 Fragaria vesca HOM05D005854 ORTHO05D007175 1.1e-78 297.4 250 65.2
FAN05G3773 Fragaria x ananassa HOM05D005854 ORTHO05D007175 5.2e-78 295.0 243 65.8
Gohir.A02G138400 Gossypium hirsutum HOM05D005854 ORTHO05D007175 8.9e-78 294.3 253 64.4
PGR031G0642 Punica granatum HOM05D005854 ORTHO05D007175 1.2e-77 293.9 250 66.4
Gorai.003G050300 Gossypium raimondii HOM05D005854 ORTHO05D007175 1.5e-77 293.5 253 64.4
Cpa.g.sc10.16 Carica papaya HOM05D005854 ORTHO05D007175 2.0e-77 293.1 252 65.5
Duzib147G0085 Durio zibethinus HOM05D005854 ORTHO05D007175 2.6e-77 292.7 253 64.4
Gohir.A03G042400 Gossypium hirsutum HOM05D005854 ORTHO05D007175 4.4e-77 292.0 253 64.4
Gohir.D03G049000 Gossypium hirsutum HOM05D005854 ORTHO05D007175 7.5e-77 291.2 253 63.6
Duzib187G0164 Durio zibethinus HOM05D005854 ORTHO05D007175 9.8e-77 290.8 253 65.2
CiPaw.02G037800 Carya illinoinensis HOM05D005854 ORTHO05D007175 2.4e-75 286.2 238 66.4
Haze_15607 Corylus avellana HOM05D005854 ORTHO05D007175 7.0e-75 284.6 251 62.9
Sed0001947 Sechium edule HOM05D005854 ORTHO05D007175 7.0e-75 284.6 251 64.5
TWI53G0615 Tripterygium wilfordii HOM05D005854 ORTHO05D007175 7.0e-75 284.6 251 63.3
COL.COLO4_22426 Corchorus olitorius HOM05D005854 ORTHO05D007175 2.7e-74 282.7 242 63.2
MD04G1222200 Malus domestica HOM05D005854 ORTHO05D007175 2.7e-74 282.7 250 62.8
Haze_23551 Corylus avellana HOM05D005854 ORTHO05D007175 7.8e-74 281.2 251 62.2
Manes.06G055200 Manihot esculenta HOM05D005854 ORTHO05D007175 7.8e-74 281.2 252 62.3
Hund23260 Selenicereus undatus HOM05D005854 ORTHO05D007175 7.8e-74 281.2 250 64.4
CsaV3_3G008340 Cucumis sativus L. HOM05D005854 ORTHO05D007175 1.0e-73 280.8 251 62.5
Atru.chr10.871 Acer truncatum HOM05D005854 ORTHO05D007175 1.7e-73 280.0 251 61.8
Cfa006467 Carpinus fangiana HOM05D005854 ORTHO05D007175 3.0e-73 279.3 251 61.8
Ciclev10016474m.g Citrus clementina HOM05D005854 ORTHO05D007175 6.6e-73 278.1 251 61.8
Actinidia10096 Actinidia chinensis HOM05D005854 ORTHO05D007175 8.6e-73 277.7 250 63.6
Lj9P593T21 Lonicera japonica HOM05D005854 ORTHO05D007175 4.3e-72 275.4 247 64.0
AUR62004438 Chenopodium quinoa HOM05D005854 ORTHO05D007175 7.3e-72 274.6 250 61.6
Oeu063662.1 Olea europaea HOM05D005854 ORTHO05D007175 1.2e-71 273.9 249 61.0
EL10Ac1g00324 Beta vulgaris HOM05D005854 ORTHO05D007175 4.7e-71 271.9 247 62.3
AUR62023510 Chenopodium quinoa HOM05D005854 ORTHO05D007175 6.2e-71 271.6 250 60.8
Nn2g15034 Nelumbo nucifera HOM05D005854 ORTHO05D007175 1.8e-70 270.0 250 62.0
QL04p059766 Quercus lobata HOM05D005854 ORTHO05D007175 1.8e-70 270.0 257 59.5
Sc26g0000750 Simmondsia chinensis HOM05D005854 ORTHO05D007175 5.2e-70 268.5 250 61.2
Ah.05g179960 Amaranthus hybridus HOM05D005854 ORTHO05D007175 2.0e-69 266.5 253 60.5
TAR383G0748 Trochodendron aralioides HOM05D005854 ORTHO05D007175 3.4e-69 265.8 250 60.0
vmacro13205 Vaccinium macrocarpon HOM05D005854 ORTHO05D007175 3.4e-69 265.8 252 61.9
HPP92_025111 Vanilla planifolia HOM05D005854 ORTHO05D007175 4.4e-69 265.4 231 64.5
CAN.G78.154 Capsicum annuum HOM05D005854 ORTHO05D007175 7.5e-69 264.6 250 62.0
Potri.011G098000 Populus trichocarpa HOM05D005854 ORTHO05D007175 9.9e-69 264.2 252 61.1
CSS0045126 Camellia sinensis var. sinensis HOM05D005854 ORTHO05D007175 2.2e-68 263.1 251 61.0
Gorai.003G131400 Gossypium raimondii HOM05D005854 ORTHO05D007175 2.9e-68 262.7 248 59.3
MSTRG.17312 Avicennia marina HOM05D005854 ORTHO05D007175 4.9e-68 261.9 241 61.4
Sabra11G0084900 Salix brachista HOM05D005854 ORTHO05D007175 6.4e-68 261.5 249 60.6
Sabra11G0091100 Salix brachista HOM05D005854 ORTHO05D007175 6.4e-68 261.5 249 60.6
Lsat_1_v5_gn_7_1520 Lactuca sativa HOM05D005854 ORTHO05D007175 1.1e-67 260.8 251 61.8
PGSC0003DMG400000203 Solanum tuberosum HOM05D005854 ORTHO05D007175 1.1e-67 260.8 230 64.8
MELO3C006052.2 Cucumis melo HOM05D005854 ORTHO05D007175 2.4e-67 259.6 251 61.8
Peaxi162Scf01012g00238 Petunia axillaris HOM05D005854 ORTHO05D007175 2.4e-67 259.6 226 65.0
Sopen01g039170 Solanum pennellii HOM05D005854 ORTHO05D007175 4.1e-67 258.8 252 61.5
PSO801G0186 Papaver somniferum HOM05D005854 ORTHO05D007175 9.2e-67 257.7 251 58.6
PSO339G2746 Papaver somniferum HOM05D005854 ORTHO05D007175 1.2e-66 257.3 252 58.3
Solyc01g095420.3 Solanum lycopersicum HOM05D005854 ORTHO05D007175 1.3e-65 253.8 249 61.0
Cc02_g38850 Coffea canephora HOM05D005854 ORTHO05D007175 1.7e-65 253.4 254 58.7
Hma1.2p1_0397F.1_g143770 Hydrangea macrophylla HOM05D005854 ORTHO05D007175 1.7e-65 253.4 258 58.1
Nitab4.5_0000305g0260 Nicotiana tabacum HOM05D005854 ORTHO05D007175 1.7e-65 253.4 243 61.7
Migut.B01823 Erythranthe guttata HOM05D005854 ORTHO05D007175 2.3e-65 253.1 245 60.8
Nitab4.5_0004613g0050 Nicotiana tabacum HOM05D005854 ORTHO05D007175 3.0e-65 252.7 243 61.7
HanXRQChr04g0120611 Helianthus annuus HOM05D005854 ORTHO05D007175 8.6e-65 251.1 255 58.8
DCAR_020830 Daucus carota HOM05D005854 ORTHO05D007175 1.5e-64 250.4 250 58.4
SalBow6G6433 Salvia bowleyana HOM05D005854 ORTHO05D007175 2.5e-64 249.6 248 58.9
SalBow5G1869 Salvia bowleyana HOM05D005854 ORTHO05D007175 3.3e-64 249.2 248 58.9
Aqoxy5G03507 Aquilegia oxysepala HOM05D005854 ORTHO05D007175 9.5e-64 247.7 256 59.8
ATR0594G138 Amborella trichopoda HOM05D005854 ORTHO05D007175 1.6e-63 246.9 239 60.7
CARHR252180 Cardamine hirsuta HOM05D005854 ORTHO05D007175 6.8e-62 241.5 260 52.3
Gohir.D03G125200 Gossypium hirsutum HOM05D005854 ORTHO05D007175 8.9e-62 241.1 178 68.0
AT4G05400 Arabidopsis thaliana HOM05D005854 ORTHO05D007175 2.0e-61 240.0 257 52.5
FAN09G2134 Fragaria x ananassa HOM05D005854 ORTHO05D007175 2.6e-61 239.6 250 56.4
SGA_v2.0_scaffold11G05711 Striga asiatica HOM05D005854 ORTHO05D007175 2.6e-61 239.6 230 60.4
Aa31LG9G9180 Aethionema arabicum HOM05D005854 ORTHO05D007175 4.4e-61 238.8 250 52.8
Carub.0007s2029 Capsella rubella HOM05D005854 ORTHO05D007175 2.2e-60 236.5 253 53.4
Sp6g03690 Schrenkiella parvula HOM05D005854 ORTHO05D007175 2.2e-60 236.5 260 51.2
Carub.0006s3331 Capsella rubella HOM05D005854 ORTHO05D007175 2.9e-60 236.1 257 51.0
Thhalv10026066m.g Eutrema salsugineum HOM05D005854 ORTHO05D007175 4.9e-60 235.3 258 52.3
MBI04_g37933_MAGBIO Magnolia biondii HOM05D005854 ORTHO05D007175 8.4e-60 234.6 248 58.5
Thhalv10028903m.g Eutrema salsugineum HOM05D005854 ORTHO05D007175 2.4e-59 233.0 260 51.5
AL6G48990 Arabidopsis lyrata HOM05D005854 ORTHO05D007175 5.4e-59 231.9 259 50.2
C09p32360 Brassica napus HOM05D005854 ORTHO05D007175 1.2e-58 230.7 254 52.4
BolC9t56081H Brassica oleracea HOM05D005854 ORTHO05D007175 1.2e-58 230.7 254 52.4
Os01g0511200 Oryza sativa ssp. japonica HOM05D005854 ORTHO05D007175 1.2e-58 230.7 251 55.0
AL7G32980 Arabidopsis lyrata HOM05D005854 ORTHO05D007175 1.0e-57 227.6 252 52.8
A09p25360 Brassica napus HOM05D005854 ORTHO05D007175 1.0e-57 227.6 260 51.5
unitig_26.g8933 Utricularia gibba HOM05D005854 ORTHO05D007175 3.9e-57 225.7 239 56.5
Rhsim07G0008000 Rhododendron simsii HOM05D005854 ORTHO05D007175 6.6e-57 224.9 250 57.2
AT4G21140 Arabidopsis thaliana HOM05D005854 ORTHO05D007175 1.9e-56 223.4 252 53.2
BraA09t38118Z Brassica rapa HOM05D005854 ORTHO05D007175 1.9e-56 223.4 260 51.2
Zm00001eb249970 Zea mays HOM05D005854 ORTHO05D007175 2.1e-55 219.9 256 54.3
ECA236G4309 Erigeron canadensis HOM05D005854 ORTHO05D007175 1.1e-54 217.6 212 58.5
CARHR227720 Cardamine hirsuta HOM05D005854 ORTHO05D007175 6.9e-54 214.9 251 49.8
BcaB01g01902 Brassica carinata HOM05D005854 ORTHO05D007175 2.9e-52 209.5 261 48.3
Cfa005769 Carpinus fangiana HOM05D005854 ORTHO05D007175 1.6e-50 203.8 166 63.3
A01p12480 Brassica napus HOM05D005854 ORTHO05D007175 6.0e-50 201.8 255 50.2
C01p15070 Brassica napus HOM05D005854 ORTHO05D007175 2.3e-49 199.9 254 49.2
BraA01t01194Z Brassica rapa HOM05D005854 ORTHO05D007175 3.0e-49 199.5 255 49.8
BcaC09g51255 Brassica carinata HOM05D005854 ORTHO05D007175 8.7e-49 198.0 254 48.8
BolC1t01456H Brassica oleracea HOM05D005854 ORTHO05D007175 8.7e-49 198.0 254 48.8
BcaNung03840 Brassica carinata HOM05D005854 ORTHO05D007175 4.3e-48 195.7 256 47.7
Prupe.6G341300 Prunus persica HOM05D005854 ORTHO05D007175 4.8e-47 192.2 133 73.7
Dinv32544 Davidia involucrata HOM05D005854 ORTHO05D007175 6.4e-44 181.8 253 49.4
Oeu007833.1 Olea europaea HOM05D005854 ORTHO05D007175 2.1e-39 166.8 182 53.8
Sp7g19220 Schrenkiella parvula HOM05D005854 ORTHO05D007175 1.9e-35 153.7 123 61.8
MD12G1238400 Malus domestica HOM05D005854 ORTHO05D007175 3.7e-31 139.4 133 58.6
Actinidia20188 Actinidia chinensis HOM05D005854 ORTHO05D007175 1.0e-28 131.3 249 41.0
TAR369G1106 Trochodendron aralioides HOM05D005854 ORTHO05D007175 1.8e-22 110.5 75 73.3
Pp3c17_23470 Physcomitrium patens HOM05D005854 ORTHO05D007175 3.1e-22 109.8 216 32.4
AagrBONN_evm.TU.Sc2ySwM_362.2286 Anthoceros agrestis HOM05D005854 ORTHO05D007175 2.6e-21 106.7 179 38.5
Lsat_1_v5_gn_3_52500 Lactuca sativa HOM05D005854 ORTHO05D007175 3.4e-21 106.3 79 75.9
CDE04G0249 Ceratophyllum demersum HOM05D005854 ORTHO05D007175 6.1e-18 95.5 127 49.6
Mapoly0007s0267 Marchantia polymorpha HOM05D005854 ORTHO05D007175 3.0e-17 93.2 145 42.1
CBR_g40874 Chara braunii HOM05D005854 ORTHO05D007175 3.3e-16 89.7 87 52.9
FvH4_6g03240 Fragaria vesca HOM05D005854 ORTHO05D007175 4.3e-16 89.4 62 67.7
Cc00_g15140 Coffea canephora HOM05D005854 ORTHO05D007175 1.2e-13 81.3 147 40.8
FvH4_6g03230 Fragaria vesca HOM05D005854 ORTHO05D007175 5.0e-12 75.9 96 47.9
Lsat_1_v5_gn_4_144561 Lactuca sativa HOM05D005854 ORTHO05D007175 7.2e-11 72.0 115 41.7
Lsat_1_v5_gn_3_52480 Lactuca sativa HOM05D005854 ORTHO05D007175 9.1e-06 55.1 79 41.8


User provided reference genes

Program Settings