Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_23540_v3 Cicer arietinum L. HOM05D004762 ORTHO05D005972 4.8e-285 983.8 488 100.0
Medtr8g027750 Medicago truncatula HOM05D004762 ORTHO05D005972 1.1e-244 849.7 487 87.1
Psat4g160680 Pisum sativum HOM05D004762 ORTHO05D005972 7.7e-243 843.6 488 86.9
Lj3g0010190 Lotus japonicus HOM05D004762 ORTHO05D005972 3.9e-234 814.7 485 83.1
Lalb_Chr04g0254441 Lupinus albus HOM05D004762 ORTHO05D005972 1.9e-228 795.8 482 82.0
Phvul.010G113600 Phaseolus vulgaris HOM05D004762 ORTHO05D005972 1.2e-227 793.1 475 81.7
Glyma.16G025200 Glycine max HOM05D004762 ORTHO05D005972 2.0e-227 792.3 475 82.3
Glyma.07G056300 Glycine max HOM05D004762 ORTHO05D005972 3.5e-227 791.6 475 81.5
VMungo0331G1989 Vigna mungo HOM05D004762 ORTHO05D005972 6.0e-227 790.8 475 81.5
arahy.Tifrunner.gnm1.ann1.BGVI4S Arachis hypogaea HOM05D004762 ORTHO05D005972 5.0e-226 787.7 471 83.0
arahy.Tifrunner.gnm1.ann1.YY9F0M Arachis hypogaea HOM05D004762 ORTHO05D005972 8.6e-226 786.9 489 80.2
arahy.Tifrunner.gnm1.ann1.NBD53L Arachis hypogaea HOM05D004762 ORTHO05D005972 8.3e-221 770.4 484 80.2
QL06p052059 Quercus lobata HOM05D004762 ORTHO05D005972 2.4e-212 742.3 474 76.2
CiPaw.01G300200 Carya illinoinensis HOM05D004762 ORTHO05D005972 2.8e-208 728.8 474 75.3
Ciclev10031450m.g Citrus clementina HOM05D004762 ORTHO05D005972 8.9e-207 723.8 483 73.3
CANSAT56G2662 Cannabis sativa HOM05D004762 ORTHO05D005972 1.5e-206 723.0 481 74.2
Gorai.013G017200 Gossypium raimondii HOM05D004762 ORTHO05D005972 2.0e-206 722.6 469 75.9
Duzib106G1587 Durio zibethinus HOM05D004762 ORTHO05D005972 9.9e-206 720.3 487 73.5
Thecc.10G014000 Theobroma cacao HOM05D004762 ORTHO05D005972 1.7e-205 719.5 483 73.7
CsaV3_5G010300 Cucumis sativus L. HOM05D004762 ORTHO05D005972 2.2e-205 719.2 475 73.5
Manes.07G131500 Manihot esculenta HOM05D004762 ORTHO05D005972 4.9e-205 718.0 481 73.0
Rhsim03G0145100 Rhododendron simsii HOM05D004762 ORTHO05D005972 4.9e-205 718.0 471 73.7
Hma1.2p1_0145F.1_g065350 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 6.4e-205 717.6 456 76.1
Gohir.D13G015700 Gossypium hirsutum HOM05D004762 ORTHO05D005972 8.4e-205 717.2 474 75.3
Atru.BG.273.p Acer truncatum HOM05D004762 ORTHO05D005972 1.1e-204 716.8 447 78.1
Potri.012G095500 Populus trichocarpa HOM05D004762 ORTHO05D005972 1.1e-204 716.8 490 72.2
TAR636G3670 Trochodendron aralioides HOM05D004762 ORTHO05D005972 1.9e-204 716.1 474 72.4
Haze_17244 Corylus avellana HOM05D004762 ORTHO05D005972 1.2e-203 713.4 488 73.0
Cfa001301 Carpinus fangiana HOM05D004762 ORTHO05D005972 2.1e-203 712.6 474 73.8
Sed0015827 Sechium edule HOM05D004762 ORTHO05D005972 7.8e-203 710.7 471 73.9
COL.COLO4_25767 Corchorus olitorius HOM05D004762 ORTHO05D005972 1.0e-202 710.3 479 73.3
Eucgr.G03076 Eucalyptus grandis HOM05D004762 ORTHO05D005972 2.3e-202 709.1 473 72.3
FAN06G2944 Fragaria x ananassa HOM05D004762 ORTHO05D005972 2.3e-202 709.1 486 73.3
TWI53G2041 Tripterygium wilfordii HOM05D004762 ORTHO05D005972 5.1e-202 708.0 460 73.9
COL.COLO4_23625 Corchorus olitorius HOM05D004762 ORTHO05D005972 8.7e-202 707.2 478 72.8
TWI09G1175 Tripterygium wilfordii HOM05D004762 ORTHO05D005972 8.7e-202 707.2 456 75.0
PSO017G1441 Papaver somniferum HOM05D004762 ORTHO05D005972 2.8e-200 702.2 483 69.8
FvH4_7g24680 Fragaria vesca HOM05D004762 ORTHO05D005972 4.8e-200 701.4 482 72.6
A05p06240 Brassica napus HOM05D004762 ORTHO05D005972 6.2e-200 701.0 480 72.1
CSS0039953 Camellia sinensis var. sinensis HOM05D004762 ORTHO05D005972 6.2e-200 701.0 475 73.3
CSS0044129 Camellia sinensis var. sinensis HOM05D004762 ORTHO05D005972 6.2e-200 701.0 475 73.3
PSO675G7276 Papaver somniferum HOM05D004762 ORTHO05D005972 6.2e-200 701.0 469 71.2
Prupe.2G252400 Prunus persica HOM05D004762 ORTHO05D005972 6.2e-200 701.0 480 72.3
PGSC0003DMG400019183 Solanum tuberosum HOM05D004762 ORTHO05D005972 6.2e-200 701.0 475 72.4
Aa31LG5G19380 Aethionema arabicum HOM05D004762 ORTHO05D005972 8.1e-200 700.7 484 72.1
Thhalv10016619m.g Eutrema salsugineum HOM05D004762 ORTHO05D005972 8.1e-200 700.7 480 71.9
vmacro06958 Vaccinium macrocarpon HOM05D004762 ORTHO05D005972 1.1e-199 700.3 516 68.8
Solyc10g076800.2 Solanum lycopersicum HOM05D004762 ORTHO05D005972 1.4e-199 699.9 475 72.2
EL10Ac2g04854 Beta vulgaris HOM05D004762 ORTHO05D005972 2.4e-199 699.1 483 70.0
PSO478G3676 Papaver somniferum HOM05D004762 ORTHO05D005972 2.4e-199 699.1 483 69.8
RcHm_v2.0_Chr1g0370541 Rosa chinensis HOM05D004762 ORTHO05D005972 2.0e-198 696.0 476 72.9
GSVIVG01032791001 Vitis vinifera HOM05D004762 ORTHO05D005972 3.4e-198 695.3 472 71.2
AT2G40190 Arabidopsis thaliana HOM05D004762 ORTHO05D005972 4.4e-198 694.9 480 70.6
FAN10G2322 Fragaria x ananassa HOM05D004762 ORTHO05D005972 5.8e-198 694.5 476 72.3
BcaC02g12138 Brassica carinata HOM05D004762 ORTHO05D005972 7.6e-198 694.1 480 71.0
SalBow6G6782 Salvia bowleyana HOM05D004762 ORTHO05D005972 9.9e-198 693.7 473 71.2
Peaxi162Scf00284g00722 Petunia axillaris HOM05D004762 ORTHO05D005972 1.7e-197 693.0 478 70.3
FAN01G2296 Fragaria x ananassa HOM05D004762 ORTHO05D005972 2.2e-197 692.6 499 70.1
BraA05t19588Z Brassica rapa HOM05D004762 ORTHO05D005972 3.8e-197 691.8 480 71.2
Carub.0004s2241 Capsella rubella HOM05D004762 ORTHO05D005972 4.9e-197 691.4 480 70.0
C04p07190 Brassica napus HOM05D004762 ORTHO05D005972 6.4e-197 691.0 477 70.9
CAN.G1087.1 Capsicum annuum HOM05D004762 ORTHO05D005972 6.4e-197 691.0 478 71.5
Nn1g09364 Nelumbo nucifera HOM05D004762 ORTHO05D005972 6.4e-197 691.0 476 70.2
FAN03G0495 Fragaria x ananassa HOM05D004762 ORTHO05D005972 1.1e-196 690.3 471 73.2
Sc10g0002460 Simmondsia chinensis HOM05D004762 ORTHO05D005972 1.1e-196 690.3 473 70.8
BcaB02g09041 Brassica carinata HOM05D004762 ORTHO05D005972 1.9e-196 689.5 471 71.3
AL108U10020 Arabidopsis lyrata HOM05D004762 ORTHO05D005972 3.2e-196 688.7 480 70.0
HanXRQChr14g0459541 Helianthus annuus HOM05D004762 ORTHO05D005972 3.2e-196 688.7 484 71.3
MD07G1223900 Malus domestica HOM05D004762 ORTHO05D005972 3.2e-196 688.7 479 71.4
Sp4g22540 Schrenkiella parvula HOM05D004762 ORTHO05D005972 3.2e-196 688.7 480 70.2
Nitab4.5_0000797g0010 Nicotiana tabacum HOM05D004762 ORTHO05D005972 4.2e-196 688.3 473 71.0
Aqoxy7G00585 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 5.4e-196 688.0 476 69.7
Gohir.A13G014500 Gossypium hirsutum HOM05D004762 ORTHO05D005972 7.1e-196 687.6 474 72.6
Nitab4.5_0013304g0010 Nicotiana tabacum HOM05D004762 ORTHO05D005972 1.2e-195 686.8 477 70.6
BolC4t22343H Brassica oleracea HOM05D004762 ORTHO05D005972 1.6e-195 686.4 478 70.7
MD01G1154800 Malus domestica HOM05D004762 ORTHO05D005972 1.6e-195 686.4 472 71.8
AUR62012271 Chenopodium quinoa HOM05D004762 ORTHO05D005972 3.5e-195 685.3 482 68.5
ClCG07G004360 Citrullus lanatus HOM05D004762 ORTHO05D005972 1.0e-194 683.7 515 67.8
Migut.F00664 Erythranthe guttata HOM05D004762 ORTHO05D005972 1.7e-194 682.9 488 69.5
CAN.G1305.22 Capsicum annuum HOM05D004762 ORTHO05D005972 3.9e-194 681.8 478 70.1
PSO017G5956 Papaver somniferum HOM05D004762 ORTHO05D005972 3.9e-194 681.8 501 66.7
Lj8A64T49 Lonicera japonica HOM05D004762 ORTHO05D005972 3.1e-191 672.2 468 71.4
TPR.G15355 Trifolium pratense HOM05D004762 ORTHO05D005972 3.4e-190 668.7 387 86.0
Cc08_g07190 Coffea canephora HOM05D004762 ORTHO05D005972 9.9e-190 667.2 481 69.2
ECA238G4598 Erigeron canadensis HOM05D001399 ORTHO05D001670 1.3e-189 666.8 448 73.2
Hma1.2p1_0523F.1_g172170 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 3.8e-189 665.2 459 71.5
AL4G37920 Arabidopsis lyrata HOM05D004762 ORTHO05D005972 6.4e-189 664.5 480 68.5
Sabra15G0114600 Salix brachista HOM05D004762 ORTHO05D005972 1.1e-188 663.7 627 56.8
DCAR_007786 Daucus carota HOM05D004762 ORTHO05D005972 7.1e-188 661.0 471 71.1
PGR142G3177 Punica granatum HOM05D004762 ORTHO05D005972 9.3e-188 660.6 469 69.1
Oeu043882.1 Olea europaea HOM05D004762 ORTHO05D005972 2.7e-187 659.1 523 64.1
ATR0580G181 Amborella trichopoda HOM05D004762 ORTHO05D005972 4.3e-185 651.7 472 67.6
Zm00001eb030250 Zea mays HOM05D004762 ORTHO05D005972 4.3e-185 651.7 453 68.9
CDE02G4330 Ceratophyllum demersum HOM05D004762 ORTHO05D005972 6.2e-184 647.9 459 68.0
Lsat_1_v5_gn_2_124101 Lactuca sativa HOM05D004762 ORTHO05D005972 8.1e-184 647.5 484 67.6
Oeu011273.2 Olea europaea HOM05D004762 ORTHO05D005972 1.4e-183 646.7 558 59.9
HPP92_020134 Vanilla planifolia HOM05D004762 ORTHO05D005972 1.7e-181 639.8 448 68.8
MELO3C018365.2 Cucumis melo HOM05D004762 ORTHO05D005972 3.9e-170 602.1 393 74.3
DCAR_024818 Daucus carota HOM05D004762 ORTHO05D005972 9.7e-169 597.4 476 62.0
Hma1.2p1_2705F.1_g327160 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 7.2e-164 581.3 382 75.1
AUR62022908 Chenopodium quinoa HOM05D004762 ORTHO05D005972 3.0e-162 575.9 402 69.9
SGA_v2.0_scaffold44G16679 Striga asiatica HOM05D004762 ORTHO05D005972 9.7e-161 570.9 406 67.7
AagrBONN_evm.TU.Sc2ySwM_228.3247 Anthoceros agrestis HOM05D004762 ORTHO05D005972 2.3e-154 549.7 463 59.4
Mapoly0096s0017 Marchantia polymorpha HOM05D004762 ORTHO05D005972 7.4e-153 544.7 467 59.3
Actinidia33916 Actinidia chinensis HOM05D004762 ORTHO05D005972 1.3e-149 533.9 408 65.9
Pp3c14_26870 Physcomitrium patens HOM05D004762 ORTHO05D005972 1.4e-146 523.9 487 54.6
SGA_v2.0_scaffold60G20982 Striga asiatica HOM05D004762 ORTHO05D005972 2.0e-145 520.0 493 55.6
unitig_748.g8448 Utricularia gibba HOM05D004762 ORTHO05D005972 3.5e-142 509.2 464 55.0
SMO358G0322 Selaginella moellendorffii HOM05D004762 ORTHO05D005972 1.9e-140 503.4 449 57.9
CBR_g12682 Chara braunii HOM05D004762 ORTHO05D005972 1.3e-136 490.7 480 52.9
BcaC02g12136 Brassica carinata HOM05D004762 ORTHO05D005972 1.9e-132 476.9 413 61.3
Dinv21748 Davidia involucrata HOM05D004762 ORTHO05D005972 8.8e-130 468.0 300 73.3
Sopen10g028440 Solanum pennellii HOM05D004762 ORTHO05D005972 8.9e-122 441.4 292 71.2
Hund15913 Selenicereus undatus HOM05D004762 ORTHO05D005972 3.7e-120 436.0 485 50.3
CARHR135230 Cardamine hirsuta HOM05D004762 ORTHO05D005972 9.2e-119 431.4 303 68.0
PSO017G2836 Papaver somniferum HOM05D004762 ORTHO05D005972 2.2e-112 410.2 251 72.9
MCO10G125 Micromonas commoda HOM05D004762 ORTHO05D005972 1.2e-107 394.4 502 45.8
Os12g0583000 Oryza sativa ssp. japonica HOM05D004762 ORTHO05D005972 8.6e-101 371.7 277 67.1
PRCOL_00001728 Prasinoderma coloniale HOM05D004762 ORTHO05D005972 6.8e-98 362.1 453 45.5
Gohir.D06G056233 Gossypium hirsutum HOM05D004762 ORTHO05D005972 2.3e-93 347.1 272 68.8
Cre01.g058521 Chlamydomonas reinhardtii HOM05D004762 ORTHO05D005972 6.4e-88 328.9 530 39.2
Haze_26859 Corylus avellana HOM05D004762 ORTHO05D005972 1.6e-86 324.3 478 39.5
Gohir.D08G135600 Gossypium hirsutum HOM05D004762 ORTHO05D005972 9.3e-79 298.5 266 61.7
Gorai.004G138800 Gossypium raimondii HOM05D004762 ORTHO05D005972 9.3e-79 298.5 272 61.0
Cpa.g.sc1441.3 Carica papaya HOM05D004762 ORTHO05D005972 3.5e-70 270.0 158 80.4
BraA04t18511Z Brassica rapa HOM05D004762 ORTHO05D001193 8.7e-69 265.4 261 54.8
BcaB01g03555 Brassica carinata HOM05D004762 ORTHO05D005972 3.8e-64 250.0 194 68.0
Aqoxy4G02491 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 2.1e-62 244.2 184 64.7
Potri.015G093000 Populus trichocarpa HOM05D004762 ORTHO05D005972 3.0e-61 240.4 184 68.5
Aqoxy4G02490 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 7.2e-55 219.2 184 57.6
A04p29970 Brassica napus HOM05D004762 ORTHO05D001193 3.9e-53 213.4 261 47.5
TAR633G0702 Trochodendron aralioides HOM05D003030 ORTHO05D003610 2.5e-52 210.7 152 71.1
Phvul.010G113266 Phaseolus vulgaris HOM05D004762 ORTHO05D005972 3.1e-50 203.8 113 79.6
TPR.G10834 Trifolium pratense HOM05D004762 ORTHO05D005972 8.8e-45 185.7 100 90.0
Nitab4.5_0006049g0030 Nicotiana tabacum HOM05D004762 ORTHO05D005972 1.3e-40 171.8 111 80.2
QL11p009420 Quercus lobata HOM05D004762 ORTHO05D005972 1.7e-40 171.4 102 83.3
SEGI_20752 Sequoiadendron giganteum HOM05D004762 ORTHO05D005972 4.2e-39 166.8 116 70.7
Aqoxy4G02489 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 7.4e-36 156.0 106 73.6
BcaB06g29139 Brassica carinata HOM05D004762 ORTHO05D005972 2.2e-35 154.5 108 71.3
EL10Ac2g03328 Beta vulgaris HOM05D004762 ORTHO05D005972 3.8e-32 143.7 106 69.8
Nitab4.5_0001180g0090 Nicotiana tabacum HOM05D004762 ORTHO05D005972 8.0e-30 136.0 94 62.8
Hma1.2p1_0812F.1_g222370 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 6.7e-29 132.9 353 28.9
EL10Ac6g13956 Beta vulgaris HOM05D004762 ORTHO05D005972 2.0e-28 131.3 90 72.2
arahy.Tifrunner.gnm1.ann1.38D1EG Arachis hypogaea HOM05D005637 ORTHO05D006983 2.2e-24 117.9 66 86.4
arahy.Tifrunner.gnm1.ann1.SGI312 Arachis hypogaea HOM05D004762 ORTHO05D005972 7.2e-23 112.8 68 82.4
BcaC01g05421 Brassica carinata HOM05D002909 ORTHO05D000493 2.6e-20 104.4 71 77.5
C03p26800 Brassica napus HOM05D000223 ORTHO05D001193 2.6e-20 104.4 71 77.5
BolC3t15065H Brassica oleracea HOM05D000223 ORTHO05D001193 2.6e-20 104.4 71 77.5
EL10Ac6g14685 Beta vulgaris HOM05D004762 ORTHO05D005972 5.4e-18 96.7 102 52.0
SEGI_02041 Sequoiadendron giganteum HOM05D004762 ORTHO05D005972 3.5e-17 94.0 98 49.0
EL10Ac3g06411 Beta vulgaris HOM05D004762 ORTHO05D005972 2.1e-14 84.7 44 88.6
Gorai.012G079400 Gossypium raimondii HOM05D004762 ORTHO05D046822 4.1e-10 70.5 146 37.7
MD13G1267900 Malus domestica HOM05D004762 ORTHO05D005972 5.4e-10 70.1 38 86.8
Gohir.D05G318650 Gossypium hirsutum HOM05D004762 ORTHO05D005972 7.8e-09 66.2 37 86.5
SMO200G0224 Selaginella moellendorffii HOM05D004141 ORTHO05D005416 1.7e-08 65.1 183 31.7
Gohir.D07G108366 Gossypium hirsutum HOM05D004762 ORTHO05D046822 2.3e-08 64.7 37 83.8
Nitab4.5_0004804g0050 Nicotiana tabacum HOM05D004762 ORTHO05D005972 2.3e-08 64.7 49 67.3
GSVIVG01022727001 Vitis vinifera HOM05D004762 ORTHO05D005972 2.9e-08 64.3 51 54.9
Lsat_1_v5_gn_3_79340 Lactuca sativa HOM05D004762 ORTHO05D231769 1.5e-07 62.0 77 50.6
Sed0021837 Sechium edule HOM05D004762 ORTHO05D005972 1.2e-06 58.9 43 67.4
BraA03t11487Z Brassica rapa HOM05D000223 ORTHO05D001193 1.6e-06 58.5 65 52.3
BcaC08g47454 Brassica carinata HOM05D004141 ORTHO05D005416 2.1e-06 58.2 191 26.7
C06p52680 Brassica napus HOM05D004141 ORTHO05D005416 2.1e-06 58.2 191 26.7
BolC6t40287H Brassica oleracea HOM05D004141 ORTHO05D005416 2.1e-06 58.2 191 26.7
BraA07t31908Z Brassica rapa HOM05D004141 ORTHO05D005416 2.1e-06 58.2 191 27.2
BcaB03g16036 Brassica carinata HOM05D004141 ORTHO05D005416 4.7e-06 57.0 178 29.2
MD02G1220900 Malus domestica HOM05D004762 ORTHO05D005972 4.7e-06 57.0 45 62.2


User provided reference genes

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