Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_23470_v3 Cicer arietinum L. HOM05D001415 ORTHO05D001075 2.1e-25 118.2 59 100.0
Medtr8g023610 Medicago truncatula HOM05D001415 ORTHO05D001075 5.9e-20 100.1 59 86.4
TPR.G26464 Trifolium pratense HOM05D001415 ORTHO05D001075 8.5e-19 96.3 59 83.1
Lalb_Chr04g0254011 Lupinus albus HOM05D001415 ORTHO05D001075 1.2e-17 92.4 59 76.3
Glyma.07G047000 Glycine max HOM05D001415 ORTHO05D001075 1.1e-15 85.9 60 76.7
Lalb_Chr10g0101041 Lupinus albus HOM05D001415 ORTHO05D001075 1.1e-15 85.9 59 71.2
Lalb_Chr18g0044821 Lupinus albus HOM05D001415 ORTHO05D001075 6.3e-14 80.1 59 64.4
Glyma.16G015200 Glycine max HOM05D001415 ORTHO05D001075 8.2e-14 79.7 62 72.6
Gohir.D06G147900 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.4e-13 79.0 59 62.7
Gorai.010G172400 Gossypium raimondii HOM05D001415 ORTHO05D001075 1.4e-13 79.0 59 62.7
CiPaw.01G210100 Carya illinoinensis HOM05D001415 ORTHO05D001075 2.4e-13 78.2 46 78.3
Atru.chr1.4181 Acer truncatum HOM05D001415 ORTHO05D001075 3.1e-13 77.8 61 68.9
Phvul.009G260600 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 4.1e-13 77.4 59 66.1
Lj1g0021078 Lotus japonicus HOM05D001415 ORTHO05D001075 9.1e-13 76.3 59 66.1
COL.COLO4_30888 Corchorus olitorius HOM05D001415 ORTHO05D001075 1.2e-12 75.9 59 64.4
Potri.002G235101 Populus trichocarpa HOM05D001415 ORTHO05D001075 1.5e-12 75.5 59 62.7
Gohir.A06G142100 Gossypium hirsutum HOM05D001415 ORTHO05D001075 2.0e-12 75.1 56 64.3
Gohir.D10G050300 Gossypium hirsutum HOM05D001415 ORTHO05D001075 2.0e-12 75.1 59 64.4
PGSC0003DMG400009157 Solanum tuberosum HOM05D001415 ORTHO05D001075 2.0e-12 75.1 43 79.1
Gorai.011G053800 Gossypium raimondii HOM05D001415 ORTHO05D001075 3.4e-12 74.3 59 62.7
Thecc.06G132000 Theobroma cacao HOM05D001415 ORTHO05D001075 3.4e-12 74.3 59 61.0
CAN.G790.46 Capsicum annuum HOM05D001415 ORTHO05D001075 4.5e-12 73.9 43 76.7
MD09G1171200 Malus domestica HOM05D001415 ORTHO05D001075 5.9e-12 73.6 46 71.7
PGR119G2183 Punica granatum HOM05D001415 ORTHO05D001075 5.9e-12 73.6 43 74.4
Gohir.A05G142400 Gossypium hirsutum HOM05D001415 ORTHO05D001075 7.7e-12 73.2 48 68.8
Gohir.A10G049600 Gossypium hirsutum HOM05D001415 ORTHO05D001075 7.7e-12 73.2 59 62.7
Gorai.009G148600 Gossypium raimondii HOM05D001415 ORTHO05D001075 7.7e-12 73.2 48 68.8
AL1G62400 Arabidopsis lyrata HOM05D001415 ORTHO05D001075 1.0e-11 72.8 40 82.5
BolC6t36025H Brassica oleracea HOM05D001415 ORTHO05D001075 1.0e-11 72.8 40 82.5
Duzib192G0302 Durio zibethinus HOM05D001415 ORTHO05D001075 1.3e-11 72.4 59 59.3
Aqoxy7G04200 Aquilegia oxysepala HOM05D001415 ORTHO05D001075 1.7e-11 72.0 52 67.3
Gohir.D05G144700 Gossypium hirsutum HOM05D001415 ORTHO05D001075 2.2e-11 71.6 48 66.7
AT1G53708 Arabidopsis thaliana HOM05D001415 ORTHO05D001075 2.9e-11 71.2 39 79.5
Carub.0001s4298 Capsella rubella HOM05D001415 ORTHO05D001075 2.9e-11 71.2 39 79.5
Phvul.010G121900 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 2.9e-11 71.2 51 76.5
THA.LOC104822609 Tarenaya hassleriana HOM05D001415 ORTHO05D001075 2.9e-11 71.2 41 75.6
A08p01440 Brassica napus HOM05D001415 ORTHO05D001075 3.8e-11 70.9 40 80.0
DCAR_022634 Daucus carota HOM05D001415 ORTHO05D001075 3.8e-11 70.9 42 73.8
Migut.I01146 Erythranthe guttata HOM05D001415 ORTHO05D001075 3.8e-11 70.9 58 58.6
Aa31LG8G1630 Aethionema arabicum HOM05D000146 ORTHO05D007947 5.0e-11 70.5 40 80.0
THA.LOC104810403 Tarenaya hassleriana HOM05D001415 ORTHO05D001075 5.0e-11 70.5 41 73.2
SalBow7G1955 Salvia bowleyana HOM05D001415 ORTHO05D001075 6.5e-11 70.1 42 71.4
Potri.003G073900 Populus trichocarpa HOM05D001415 ORTHO05D001075 8.5e-11 69.7 64 57.8
AL3G26700 Arabidopsis lyrata HOM05D001415 ORTHO05D001075 1.1e-10 69.3 40 77.5
AT3G14362 Arabidopsis thaliana HOM05D001415 ORTHO05D001075 1.1e-10 69.3 40 77.5
A03p38770 Brassica napus HOM05D001415 ORTHO05D001075 1.1e-10 69.3 40 77.5
A05p35030 Brassica napus HOM05D001415 ORTHO05D001075 1.1e-10 69.3 40 77.5
C05p52990 Brassica napus HOM05D001415 ORTHO05D001075 1.1e-10 69.3 40 77.5
BolC3t16958H Brassica oleracea HOM05D001415 ORTHO05D001075 1.1e-10 69.3 40 77.5
BolC5t33977H Brassica oleracea HOM05D001415 ORTHO05D001075 1.1e-10 69.3 40 77.5
BraA01t03976Z Brassica rapa HOM05D001415 ORTHO05D001075 1.1e-10 69.3 40 77.5
BraA03t13025Z Brassica rapa HOM05D001415 ORTHO05D001075 1.1e-10 69.3 40 77.5
BraA05t22317Z Brassica rapa HOM05D001415 ORTHO05D001075 1.1e-10 69.3 40 77.5
Carub.0003s1407 Capsella rubella HOM05D001415 ORTHO05D001075 1.1e-10 69.3 40 77.5
Nn6g31497 Nelumbo nucifera HOM05D001415 ORTHO05D001075 1.1e-10 69.3 59 61.0
RcHm_v2.0_Chr2g0148241 Rosa chinensis HOM05D001415 ORTHO05D001075 1.1e-10 69.3 43 72.1
SalBow6G2192 Salvia bowleyana HOM05D001415 ORTHO05D001075 1.1e-10 69.3 60 60.0
MELO3C024301.2 Cucumis melo HOM05D001415 ORTHO05D001075 1.9e-10 68.6 42 71.4
A01p39330 Brassica napus HOM05D001415 ORTHO05D001075 2.5e-10 68.2 40 75.0
Potri.001G161200 Populus trichocarpa HOM05D001415 ORTHO05D001075 2.5e-10 68.2 43 67.4
Prupe.3G029700 Prunus persica HOM05D001415 ORTHO05D001075 2.5e-10 68.2 46 67.4
BraA08t32195Z Brassica rapa HOM05D001415 ORTHO05D001075 3.2e-10 67.8 59 61.0
CARHR089420 Cardamine hirsuta HOM05D001415 ORTHO05D001075 3.2e-10 67.8 39 74.4
CsaV3_7G033880 Cucumis sativus L. HOM05D001415 ORTHO05D001075 4.2e-10 67.4 43 74.4
BolC3t21494H Brassica oleracea HOM05D001415 ORTHO05D001075 5.5e-10 67.0 59 61.0
Manes.04G152500 Manihot esculenta HOM05D001415 ORTHO05D001075 1.2e-09 65.9 42 64.3
BolC1t04969H Brassica oleracea HOM05D001415 ORTHO05D001075 2.1e-09 65.1 40 75.0
ATR0626G034 Amborella trichopoda HOM05D001415 ORTHO05D001075 2.7e-09 64.7 41 68.3
arahy.Tifrunner.gnm1.ann1.S2C0P1 Arachis hypogaea HOM05D001415 ORTHO05D001075 2.7e-09 64.7 54 64.8
Migut.D00904 Erythranthe guttata HOM05D001415 ORTHO05D001075 3.6e-09 64.3 31 87.1
C01p50150 Brassica napus HOM05D001415 ORTHO05D001075 4.7e-09 63.9 60 60.0
CSS0014027 Camellia sinensis var. sinensis HOM05D001415 ORTHO05D001075 3.0e-08 61.2 52 61.5
PSO135G0377 Papaver somniferum HOM05D001415 ORTHO05D001075 1.5e-07 58.9 39 66.7
Dinv37809 Davidia involucrata HOM05D001415 ORTHO05D001075 4.4e-07 57.4 51 60.8
Ciclev10030229m.g Citrus clementina HOM05D001415 ORTHO05D001075 5.7e-07 57.0 41 58.5
CsaV3_4G003150 Cucumis sativus L. HOM05D001415 ORTHO05D001075 7.4e-07 56.6 36 61.1
Cpa.g.sc157.2 Carica papaya HOM05D001415 ORTHO05D001075 1.3e-06 55.8 42 61.9
Cpa.g.sc81.113 Carica papaya HOM05D001415 ORTHO05D001075 1.3e-06 55.8 41 56.1
TWI79G1693 Tripterygium wilfordii HOM05D001415 ORTHO05D001075 1.7e-06 55.5 41 58.5
Duzib168G2106 Durio zibethinus HOM05D001415 ORTHO05D001075 2.8e-06 54.7 41 56.1
Carub.0002s1913 Capsella rubella HOM05D018069 ORTHO05D019709 3.7e-06 54.3 58 51.7
Cfa011527 Carpinus fangiana HOM05D001415 ORTHO05D001075 3.7e-06 54.3 42 54.8
Medtr7g117490 Medicago truncatula HOM05D001415 ORTHO05D001075 3.7e-06 54.3 37 75.7
Nn2g11165 Nelumbo nucifera HOM05D001415 ORTHO05D001075 3.7e-06 54.3 33 72.7
HanXRQChr09g0250171 Helianthus annuus HOM05D001415 ORTHO05D001075 4.8e-06 53.9 38 60.5
Potri.008G035900 Populus trichocarpa HOM05D001415 ORTHO05D001075 4.8e-06 53.9 31 71.0
Potri.010G226250 Populus trichocarpa HOM05D001415 ORTHO05D001075 4.8e-06 53.9 31 71.0
MD01G1136300 Malus domestica HOM05D001415 ORTHO05D001075 6.3e-06 53.5 29 79.3
RcHm_v2.0_Chr1g0367921 Rosa chinensis HOM05D001415 ORTHO05D001075 6.3e-06 53.5 29 79.3
Sed0023003 Sechium edule HOM05D001415 ORTHO05D001075 6.3e-06 53.5 40 52.5
Zm00001eb136340 Zea mays HOM05D001415 ORTHO05D001075 6.3e-06 53.5 32 75.0
Aqoxy2G02269 Aquilegia oxysepala HOM05D001415 ORTHO05D001075 8.2e-06 53.1 43 55.8
Haze_24132 Corylus avellana HOM05D001415 ORTHO05D001075 8.2e-06 53.1 36 61.1
Duzib170G0931 Durio zibethinus HOM05D001415 ORTHO05D001075 8.2e-06 53.1 36 61.1
Gohir.A05G093900 Gossypium hirsutum HOM05D001415 ORTHO05D001075 8.2e-06 53.1 36 61.1
Gohir.D05G094400 Gossypium hirsutum HOM05D001415 ORTHO05D001075 8.2e-06 53.1 36 61.1
Gorai.009G097500 Gossypium raimondii HOM05D001415 ORTHO05D001075 8.2e-06 53.1 36 61.1
Potri.001G242800 Populus trichocarpa HOM05D001415 ORTHO05D001075 8.2e-06 53.1 36 61.1
Potri.009G034300 Populus trichocarpa HOM05D001415 ORTHO05D001075 8.2e-06 53.1 36 61.1
Prupe.2G237800 Prunus persica HOM05D001415 ORTHO05D001075 8.2e-06 53.1 28 82.1
Thecc.09G317800 Theobroma cacao HOM05D001415 ORTHO05D001075 8.2e-06 53.1 36 61.1
TWI31G0218 Tripterygium wilfordii HOM05D001415 ORTHO05D001075 8.2e-06 53.1 41 53.7


User provided reference genes

Program Settings