Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_23271_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 5.3e-247 857.8 646 100.0
TPR.G26938 Trifolium pratense HOM05D005013 ORTHO05D006005 9.6e-225 783.9 449 90.4
Ca_23262_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 1.9e-220 769.6 617 97.9
Medtr8g014460 Medicago truncatula HOM05D005013 ORTHO05D006005 2.2e-216 756.1 450 86.9
Psat2g107800 Pisum sativum HOM05D005013 ORTHO05D006005 2.8e-216 755.7 451 88.2
Phvul.010G145300 Phaseolus vulgaris HOM05D005013 ORTHO05D006005 3.6e-203 712.2 449 83.5
VMungo0331G0134 Vigna mungo HOM05D005013 ORTHO05D006005 3.6e-203 712.2 449 83.3
Glyma.07G015500 Glycine max HOM05D005013 ORTHO05D006005 1.8e-202 709.9 450 83.8
Lalb_Chr22g0351551 Lupinus albus HOM05D005013 ORTHO05D006005 9.7e-201 704.1 451 80.9
Glyma.08G201000 Glycine max HOM05D005013 ORTHO05D006005 6.3e-200 701.4 451 82.7
Lj3g0013010 Lotus japonicus HOM05D005013 ORTHO05D006005 3.1e-199 699.1 453 82.1
arahy.Tifrunner.gnm1.ann1.1M6YYJ Arachis hypogaea HOM05D005013 ORTHO05D006005 3.5e-190 669.1 446 79.4
arahy.Tifrunner.gnm1.ann1.R367CR Arachis hypogaea HOM05D005013 ORTHO05D006005 4.5e-190 668.7 446 79.4
Lalb_Chr04g0262971 Lupinus albus HOM05D005013 ORTHO05D006005 4.5e-190 668.7 449 78.8
Thecc.06G100000 Theobroma cacao HOM05D005013 ORTHO05D006005 1.5e-177 627.1 444 74.5
arahy.Tifrunner.gnm1.ann1.VUMD9N Arachis hypogaea HOM05D005013 ORTHO05D006005 3.4e-177 625.9 498 68.9
Duzib235G0505 Durio zibethinus HOM05D005013 ORTHO05D006005 1.7e-176 623.6 444 73.9
Duzib192G0488 Durio zibethinus HOM05D005013 ORTHO05D006005 2.4e-175 619.8 445 73.5
Prupe.1G178600 Prunus persica HOM05D005013 ORTHO05D006005 1.2e-174 617.5 449 72.2
Gohir.D09G081300 Gossypium hirsutum HOM05D005013 ORTHO05D006005 3.5e-174 615.9 442 72.9
Gorai.006G096900 Gossypium raimondii HOM05D005013 ORTHO05D006005 4.5e-174 615.5 442 72.6
Gorai.003G061700 Gossypium raimondii HOM05D005013 ORTHO05D006005 1.0e-173 614.4 440 72.7
CsaV3_7G035280 Cucumis sativus L. HOM05D005013 ORTHO05D006005 1.7e-173 613.6 450 71.6
Gohir.A09G081200 Gossypium hirsutum HOM05D005013 ORTHO05D006005 1.7e-173 613.6 443 72.5
COL.COLO4_30512 Corchorus olitorius HOM05D005013 ORTHO05D006005 5.0e-173 612.1 444 72.1
MELO3C024438.2 Cucumis melo HOM05D005013 ORTHO05D006005 6.6e-173 611.7 452 71.2
Prupe.3G059100 Prunus persica HOM05D005013 ORTHO05D006005 6.6e-173 611.7 449 71.3
CANSAT56G0983 Cannabis sativa HOM05D005013 ORTHO05D006005 1.9e-172 610.1 456 70.6
ClCG09G000200 Citrullus lanatus HOM05D005013 ORTHO05D006005 7.2e-172 608.2 455 71.2
TAR633G2449 Trochodendron aralioides HOM05D005013 ORTHO05D006005 8.0e-171 604.7 454 69.8
Sed0027607 Sechium edule HOM05D005013 ORTHO05D006005 1.0e-170 604.4 452 70.6
Ciclev10025066m.g Citrus clementina HOM05D005013 ORTHO05D006005 2.3e-170 603.2 454 69.6
RcHm_v2.0_Chr2g0140531 Rosa chinensis HOM05D005013 ORTHO05D006005 5.2e-170 602.1 450 71.3
QL05p020046 Quercus lobata HOM05D005013 ORTHO05D006005 8.9e-170 601.3 453 70.9
Gohir.A02G117400 Gossypium hirsutum HOM05D005013 ORTHO05D006005 1.2e-169 600.9 439 71.1
MD17G1184000 Malus domestica HOM05D005013 ORTHO05D006005 3.4e-169 599.4 454 71.1
MD09G1202900 Malus domestica HOM05D005013 ORTHO05D006005 2.2e-168 596.7 452 70.8
Gohir.D03G057900 Gossypium hirsutum HOM05D005013 ORTHO05D006005 1.8e-167 593.6 403 75.7
FvH4_6g32381 Fragaria vesca HOM05D005013 ORTHO05D006005 4.6e-166 589.0 450 70.0
CiPaw.02G145800 Carya illinoinensis HOM05D005013 ORTHO05D006005 5.9e-166 588.6 449 70.8
FAN02G3590 Fragaria x ananassa HOM05D005013 ORTHO05D006005 1.7e-165 587.0 449 69.9
FAN14G4508 Fragaria x ananassa HOM05D005013 ORTHO05D006005 1.7e-165 587.0 450 69.8
vmacro18853 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 3.9e-165 585.9 446 68.6
CSS0033602 Camellia sinensis var. sinensis HOM05D005013 ORTHO05D006005 4.3e-164 582.4 455 67.9
Potri.001G190000 Populus trichocarpa HOM05D005013 ORTHO05D006005 5.6e-164 582.0 452 67.3
FAN05G1466 Fragaria x ananassa HOM05D005013 ORTHO05D006005 7.3e-164 581.6 450 69.1
Sabra01G0151600 Salix brachista HOM05D005013 ORTHO05D006005 9.5e-164 581.3 449 67.7
PGR102G0015 Punica granatum HOM05D005013 ORTHO05D006005 1.2e-163 580.9 456 67.3
Atru.chr1.3523 Acer truncatum HOM05D005013 ORTHO05D006005 3.1e-162 576.2 460 66.5
Manes.11G033651 Manihot esculenta HOM05D005013 ORTHO05D006005 5.2e-162 575.5 451 68.5
GSVIVG01016983001 Vitis vinifera HOM05D005013 ORTHO05D006005 5.2e-162 575.5 421 70.1
CAN.G1143.13 Capsicum annuum HOM05D005013 ORTHO05D006005 8.9e-162 574.7 454 67.4
FAN09G0199 Fragaria x ananassa HOM05D005013 ORTHO05D006005 1.5e-161 573.9 453 68.7
Hma1.2p1_1232F.1_g268910 Hydrangea macrophylla HOM05D005013 ORTHO05D006005 2.6e-161 573.2 442 67.9
Manes.04G134200 Manihot esculenta HOM05D005013 ORTHO05D006005 5.8e-161 572.0 456 67.3
Solyc03g121020.3 Solanum lycopersicum HOM05D005013 ORTHO05D006005 7.5e-161 571.6 457 66.7
Peaxi162Scf00038g01028 Petunia axillaris HOM05D005013 ORTHO05D006005 1.3e-160 570.9 459 66.4
Sopen03g039850 Solanum pennellii HOM05D005013 ORTHO05D006005 1.7e-160 570.5 457 66.5
Eucgr.F03078 Eucalyptus grandis HOM05D005013 ORTHO05D006005 4.1e-159 565.8 457 67.4
Haze_15847 Corylus avellana HOM05D005013 ORTHO05D006005 5.4e-159 565.5 437 69.6
Cc04_g02560 Coffea canephora HOM05D005013 ORTHO05D006005 2.0e-158 563.5 454 65.9
TAR623G0538 Trochodendron aralioides HOM05D005013 ORTHO05D006005 4.6e-158 562.4 393 72.8
TWI12G0488 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 4.3e-156 555.8 451 64.1
Nitab4.5_0006467g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 5.6e-156 555.4 486 62.1
Aa31LG4G90 Aethionema arabicum HOM05D005013 ORTHO05D006005 8.1e-155 551.6 445 65.8
Carub.0002s2777 Capsella rubella HOM05D005013 ORTHO05D006005 1.1e-154 551.2 432 66.2
Potri.003G048900 Populus trichocarpa HOM05D005013 ORTHO05D006005 1.4e-154 550.8 451 65.4
THA.LOC104819998 Tarenaya hassleriana HOM05D005013 ORTHO05D006005 1.5e-153 547.4 421 66.7
Actinidia32097 Actinidia chinensis HOM05D005013 ORTHO05D006005 3.4e-153 546.2 382 73.0
MBI04_g36817_MAGBIO Magnolia biondii HOM05D005013 ORTHO05D006005 3.2e-151 539.7 427 66.0
Rhsim08G0227500 Rhododendron simsii HOM05D005013 ORTHO05D006005 7.1e-151 538.5 445 64.7
TWI75G0851 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 1.6e-150 537.3 453 64.0
Thhalv10018561m.g Eutrema salsugineum HOM05D005013 ORTHO05D006005 2.7e-150 536.6 434 65.0
Nitab4.5_0006902g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 4.6e-150 535.8 443 65.2
Sp5g36040 Schrenkiella parvula HOM05D005013 ORTHO05D006005 1.0e-149 534.6 433 64.7
PSO513G0173 Papaver somniferum HOM05D005013 ORTHO05D006005 3.0e-149 533.1 455 61.8
Lj9C512T10 Lonicera japonica HOM05D005013 ORTHO05D006005 5.1e-149 532.3 464 62.7
Hund07600 Selenicereus undatus HOM05D005013 ORTHO05D006005 8.6e-149 531.6 448 63.6
HanXRQChr02g0032251 Helianthus annuus HOM05D005013 ORTHO05D006005 1.5e-148 530.8 456 61.8
PSO339G6278 Papaver somniferum HOM05D005013 ORTHO05D006005 1.5e-148 530.8 456 61.8
arahy.Tifrunner.gnm1.ann1.YYV7TY Arachis hypogaea HOM05D005013 ORTHO05D006005 1.9e-148 530.4 451 65.4
Aqoxy2G02285 Aquilegia oxysepala HOM05D005013 ORTHO05D006005 1.2e-147 527.7 453 62.0
Nn2g11173 Nelumbo nucifera HOM05D005013 ORTHO05D006005 1.2e-147 527.7 452 63.5
SalBow7G4596 Salvia bowleyana HOM05D005013 ORTHO05D006005 4.0e-146 522.7 456 61.6
ECA247G2560 Erigeron canadensis HOM05D005013 ORTHO05D006005 5.2e-146 522.3 432 63.7
AT1G79730 Arabidopsis thaliana HOM05D005013 ORTHO05D006005 1.5e-145 520.8 420 65.2
MSTRG.4752 Avicennia marina HOM05D005013 ORTHO05D006005 5.8e-145 518.8 453 61.1
unitig_52.g17097 Utricularia gibba HOM05D005013 ORTHO05D006005 1.7e-141 507.3 453 59.4
Duzib160G0376 Durio zibethinus HOM05D005013 ORTHO05D006005 2.3e-141 506.9 369 72.1
A10p33120 Brassica napus HOM05D005013 ORTHO05D006005 8.6e-141 505.0 420 63.1
Oeu026781.2 Olea europaea HOM05D005013 ORTHO05D006005 1.5e-140 504.2 449 59.9
SGA_v2.0_scaffold4G02026 Striga asiatica HOM05D005013 ORTHO05D006005 2.8e-139 500.0 408 63.7
Lsat_1_v5_gn_4_97461 Lactuca sativa HOM05D005013 ORTHO05D006005 3.6e-139 499.6 435 60.9
BcaC06g31994 Brassica carinata HOM05D005013 ORTHO05D006005 6.2e-139 498.8 421 63.2
DCAR_016188 Daucus carota HOM05D005013 ORTHO05D006005 6.2e-139 498.8 452 58.2
EL10Ac9g21206 Beta vulgaris HOM05D005013 ORTHO05D006005 3.1e-138 496.5 455 60.4
C09p74080 Brassica napus HOM05D005013 ORTHO05D006005 5.2e-138 495.7 373 67.0
Lsat_1_v5_gn_1_36740 Lactuca sativa HOM05D005013 ORTHO05D006005 2.0e-137 493.8 394 63.7
BolC9t60139H Brassica oleracea HOM05D005013 ORTHO05D006005 4.2e-135 486.1 447 58.8
ATR0661G470 Amborella trichopoda HOM05D005013 ORTHO05D006005 5.1e-133 479.2 443 58.2
Ah.01g005800 Amaranthus hybridus HOM05D005013 ORTHO05D006005 8.7e-133 478.4 455 58.5
HanXRQChr09g0276241 Helianthus annuus HOM05D005013 ORTHO05D006005 1.1e-132 478.0 450 57.6
AUR62022205 Chenopodium quinoa HOM05D005013 ORTHO05D006005 1.4e-130 471.1 455 57.1
AUR62031914 Chenopodium quinoa HOM05D005013 ORTHO05D006005 9.0e-130 468.4 430 59.1
Os08g0157100 Oryza sativa ssp. japonica HOM05D005013 ORTHO05D006005 2.6e-129 466.8 450 56.2
CAN.G1143.12 Capsicum annuum HOM05D005013 ORTHO05D006005 1.9e-127 460.7 409 58.4
Migut.D00991 Erythranthe guttata HOM05D005013 ORTHO05D006005 1.1e-124 451.4 380 62.6
Zm00001eb415930 Zea mays HOM05D005013 ORTHO05D006005 7.4e-124 448.7 411 57.9
AL2G41830 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 9.6e-124 448.4 420 58.1
Dinv30436 Davidia involucrata HOM05D005013 ORTHO05D006005 3.0e-117 426.8 310 72.9
CDE12G0264 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 1.4e-114 417.9 446 53.8
Actinidia21716 Actinidia chinensis HOM05D005013 ORTHO05D006005 3.7e-107 393.3 286 71.0
Zm00001eb172540 Zea mays HOM05D005013 ORTHO05D006005 2.4e-106 390.6 324 60.8
Mapoly0123s0029 Marchantia polymorpha HOM05D005013 ORTHO05D006005 2.9e-104 383.6 381 55.4
AagrBONN_evm.TU.Sc2ySwM_117.3356 Anthoceros agrestis HOM05D005013 ORTHO05D006005 3.3e-100 370.2 337 59.9
Sc15g0001880 Simmondsia chinensis HOM05D005013 ORTHO05D006005 6.9e-98 362.5 280 68.2
BcaNung02135 Brassica carinata HOM05D005013 ORTHO05D006005 9.0e-98 362.1 356 55.9
SMO116G0383 Selaginella moellendorffii HOM05D005013 ORTHO05D006005 1.0e-96 358.6 334 56.9
Pp3c1_7460 Physcomitrium patens HOM05D005013 ORTHO05D006005 3.9e-93 346.7 417 48.0
TAR369G0672 Trochodendron aralioides HOM05D005013 ORTHO05D006005 1.8e-85 321.2 370 50.8
AL2G41840 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 1.6e-78 298.1 213 71.4
HPP92_015196 Vanilla planifolia HOM05D005013 ORTHO05D006005 7.0e-74 282.7 248 62.1
CDE06G0689 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 4.5e-73 280.0 352 48.6
SHI11095 Sapria himalayana HOM05D005013 ORTHO05D006005 6.5e-72 276.2 426 43.0
Cpa.g.sc109.3 Carica papaya HOM05D005013 ORTHO05D006005 4.4e-68 263.5 210 65.2
CBR_g8033 Chara braunii HOM05D005013 ORTHO05D006005 3.7e-67 260.4 360 44.7
Cpa.g.sc109.1 Carica papaya HOM05D005013 ORTHO05D006005 1.2e-65 255.4 191 69.1
BraA10t45345Z Brassica rapa HOM05D005013 ORTHO05D006005 6.5e-64 249.6 173 74.0
Ah.01g022080 Amaranthus hybridus HOM05D005013 ORTHO05D006005 1.8e-61 241.5 454 38.1
HPP92_015185 Vanilla planifolia HOM05D005013 ORTHO05D006005 6.4e-51 206.5 192 56.8
Oeu023599.1 Olea europaea HOM05D005013 ORTHO05D006005 9.8e-44 182.6 152 57.9
Lj5C53T3 Lonicera japonica HOM05D005013 ORTHO05D006005 1.3e-43 182.2 195 50.8
Migut.I00890 Erythranthe guttata HOM05D005013 ORTHO05D006005 1.1e-39 169.1 507 29.8
Psat4g155920 Pisum sativum HOM05D001854 ORTHO05D001800 2.3e-37 161.4 110 77.3
Psat4g155880 Pisum sativum HOM05D001854 ORTHO05D001800 5.2e-37 160.2 110 77.3
CARHR074670 Cardamine hirsuta HOM05D005013 ORTHO05D006005 2.9e-27 127.9 98 67.3
Lsat_1_v5_gn_6_46660 Lactuca sativa HOM05D005013 ORTHO05D006005 7.3e-23 113.2 95 60.0
Nn2g13410 Nelumbo nucifera HOM05D005013 ORTHO05D006005 2.4e-21 108.2 120 55.0
CAN.G907.1 Capsicum annuum HOM05D005013 ORTHO05D006005 1.5e-20 105.5 86 59.3
Cre12.g520250 Chlamydomonas reinhardtii HOM05D005013 ORTHO05D006005 2.6e-20 104.8 394 26.9
MCO01G084 Micromonas commoda HOM05D005013 ORTHO05D006005 9.6e-15 86.3 338 26.0
vmacro04324 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 1.1e-13 82.8 129 40.3
CBR_g48652 Chara braunii HOM05D005013 ORTHO05D006005 3.1e-13 81.3 161 36.6
AL2G25330 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 1.5e-12 79.0 164 38.4
CAN.G1143.11 Capsicum annuum HOM05D005013 ORTHO05D115532 3.2e-10 71.2 44 72.7
Lsat_1_v5_gn_1_14160 Lactuca sativa HOM05D005013 ORTHO05D006005 2.1e-09 68.6 106 41.5
CAN.G1143.9 Capsicum annuum HOM05D000602 ORTHO05D001147 2.7e-09 68.2 127 36.2
Oeu023601.1 Olea europaea HOM05D005013 ORTHO05D006005 7.9e-09 66.6 51 66.7
SEGI_39677 Sequoiadendron giganteum HOM05D050634 ORTHO05D006005 1.0e-08 66.2 113 38.9
Lsat_1_v5_gn_5_133740 Lactuca sativa HOM05D000912 ORTHO05D021086 4.3e-07 60.8 61 55.7
TAR560G0009 Trochodendron aralioides HOM05D005013 ORTHO05D006005 9.6e-07 59.7 48 64.6
Oeu026780.1 Olea europaea HOM05D005013 ORTHO05D006005 8.1e-06 56.6 48 60.4


User provided reference genes

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