Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_23262_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 2.5e-249 865.5 648 100.0
Ca_23271_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 6.5e-221 771.2 617 97.9
TPR.G26938 Trifolium pratense HOM05D005013 ORTHO05D006005 3.9e-218 761.9 407 94.6
Psat2g107800 Pisum sativum HOM05D005013 ORTHO05D006005 5.5e-212 741.5 408 92.4
Medtr8g014460 Medicago truncatula HOM05D005013 ORTHO05D006005 1.4e-210 736.9 408 90.9
Glyma.07G015500 Glycine max HOM05D005013 ORTHO05D006005 1.7e-200 703.4 406 88.4
Phvul.010G145300 Phaseolus vulgaris HOM05D005013 ORTHO05D006005 1.7e-200 703.4 405 87.9
VMungo0331G0134 Vigna mungo HOM05D005013 ORTHO05D006005 2.2e-200 703.0 405 87.9
Glyma.08G201000 Glycine max HOM05D005013 ORTHO05D006005 9.1e-199 697.6 416 86.1
Lalb_Chr22g0351551 Lupinus albus HOM05D005013 ORTHO05D006005 2.2e-197 693.0 404 85.9
Lj3g0013010 Lotus japonicus HOM05D005013 ORTHO05D006005 2.7e-195 686.0 408 86.3
arahy.Tifrunner.gnm1.ann1.1M6YYJ Arachis hypogaea HOM05D005013 ORTHO05D006005 2.7e-190 669.5 402 84.1
arahy.Tifrunner.gnm1.ann1.R367CR Arachis hypogaea HOM05D005013 ORTHO05D006005 3.5e-190 669.1 402 84.1
Lalb_Chr04g0262971 Lupinus albus HOM05D005013 ORTHO05D006005 7.2e-188 661.4 405 83.0
arahy.Tifrunner.gnm1.ann1.VUMD9N Arachis hypogaea HOM05D005013 ORTHO05D006005 1.8e-183 646.7 458 74.2
Duzib235G0505 Durio zibethinus HOM05D005013 ORTHO05D006005 2.9e-181 639.4 398 80.7
Prupe.1G178600 Prunus persica HOM05D005013 ORTHO05D006005 5.0e-181 638.6 402 79.9
Duzib192G0488 Durio zibethinus HOM05D005013 ORTHO05D006005 8.6e-181 637.9 398 80.7
MELO3C024438.2 Cucumis melo HOM05D005013 ORTHO05D006005 5.6e-180 635.2 409 78.5
CsaV3_7G035280 Cucumis sativus L. HOM05D005013 ORTHO05D006005 5.6e-180 635.2 408 78.2
Thecc.06G100000 Theobroma cacao HOM05D005013 ORTHO05D006005 7.3e-180 634.8 398 80.4
CANSAT56G0983 Cannabis sativa HOM05D005013 ORTHO05D006005 2.8e-179 632.9 408 78.2
Prupe.3G059100 Prunus persica HOM05D005013 ORTHO05D006005 2.8e-179 632.9 402 78.9
Gohir.D09G081300 Gossypium hirsutum HOM05D005013 ORTHO05D006005 4.7e-179 632.1 396 79.8
Gorai.006G096900 Gossypium raimondii HOM05D005013 ORTHO05D006005 6.1e-179 631.7 396 79.5
Gorai.003G061700 Gossypium raimondii HOM05D005013 ORTHO05D006005 8.0e-179 631.3 398 79.6
Gohir.A09G081200 Gossypium hirsutum HOM05D005013 ORTHO05D006005 1.8e-178 630.2 397 79.3
ClCG09G000200 Citrullus lanatus HOM05D005013 ORTHO05D006005 2.3e-178 629.8 413 77.7
Sed0027607 Sechium edule HOM05D005013 ORTHO05D006005 2.3e-178 629.8 408 77.5
COL.COLO4_30512 Corchorus olitorius HOM05D005013 ORTHO05D006005 1.2e-177 627.5 398 78.6
RcHm_v2.0_Chr2g0140531 Rosa chinensis HOM05D005013 ORTHO05D006005 2.0e-177 626.7 403 79.2
Gohir.D03G057900 Gossypium hirsutum HOM05D005013 ORTHO05D006005 4.4e-177 625.5 396 79.5
TAR633G2449 Trochodendron aralioides HOM05D005013 ORTHO05D006005 8.3e-176 621.3 406 76.8
QL05p020046 Quercus lobata HOM05D005013 ORTHO05D006005 4.1e-175 619.0 408 77.2
Gohir.A02G117400 Gossypium hirsutum HOM05D005013 ORTHO05D006005 9.2e-175 617.8 397 77.8
MD09G1202900 Malus domestica HOM05D005013 ORTHO05D006005 9.2e-175 617.8 405 78.5
MD17G1184000 Malus domestica HOM05D005013 ORTHO05D006005 1.2e-174 617.5 405 78.3
FvH4_6g32381 Fragaria vesca HOM05D005013 ORTHO05D006005 2.7e-174 616.3 402 77.9
FAN14G4508 Fragaria x ananassa HOM05D005013 ORTHO05D006005 1.0e-173 614.4 402 77.6
FAN02G3590 Fragaria x ananassa HOM05D005013 ORTHO05D006005 3.9e-173 612.5 402 77.6
Ciclev10025066m.g Citrus clementina HOM05D005013 ORTHO05D006005 5.0e-173 612.1 426 73.2
CSS0033602 Camellia sinensis var. sinensis HOM05D005013 ORTHO05D006005 8.6e-173 611.3 404 75.7
FAN05G1466 Fragaria x ananassa HOM05D005013 ORTHO05D006005 3.3e-172 609.4 402 77.1
vmacro18853 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 5.6e-172 608.6 403 75.4
PGR102G0015 Punica granatum HOM05D005013 ORTHO05D006005 6.8e-170 601.7 407 74.0
CiPaw.02G145800 Carya illinoinensis HOM05D005013 ORTHO05D006005 8.9e-170 601.3 422 74.4
FAN09G0199 Fragaria x ananassa HOM05D005013 ORTHO05D006005 2.6e-169 599.7 405 76.3
CAN.G1143.13 Capsicum annuum HOM05D005013 ORTHO05D006005 4.4e-169 599.0 404 74.3
Potri.001G190000 Populus trichocarpa HOM05D005013 ORTHO05D006005 5.8e-169 598.6 403 73.0
Manes.04G134200 Manihot esculenta HOM05D005013 ORTHO05D006005 7.5e-169 598.2 406 74.4
Sabra01G0151600 Salix brachista HOM05D005013 ORTHO05D006005 7.5e-169 598.2 401 73.3
Hma1.2p1_1232F.1_g268910 Hydrangea macrophylla HOM05D005013 ORTHO05D006005 9.8e-169 597.8 406 74.4
Peaxi162Scf00038g01028 Petunia axillaris HOM05D005013 ORTHO05D006005 4.9e-168 595.5 407 73.5
Atru.chr1.3523 Acer truncatum HOM05D005013 ORTHO05D006005 4.1e-167 592.4 411 72.0
GSVIVG01016983001 Vitis vinifera HOM05D005013 ORTHO05D006005 4.1e-167 592.4 376 77.1
Manes.11G033651 Manihot esculenta HOM05D005013 ORTHO05D006005 7.0e-167 591.7 404 74.3
Solyc03g121020.3 Solanum lycopersicum HOM05D005013 ORTHO05D006005 9.2e-167 591.3 426 70.4
Sopen03g039850 Solanum pennellii HOM05D005013 ORTHO05D006005 2.0e-166 590.1 426 70.2
Cc04_g02560 Coffea canephora HOM05D005013 ORTHO05D006005 1.1e-164 584.3 404 72.8
Eucgr.F03078 Eucalyptus grandis HOM05D005013 ORTHO05D006005 1.1e-164 584.3 410 72.4
Nitab4.5_0006467g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 2.5e-164 583.2 435 68.3
Aa31LG4G90 Aethionema arabicum HOM05D005013 ORTHO05D006005 4.7e-163 578.9 396 73.0
Actinidia32097 Actinidia chinensis HOM05D005013 ORTHO05D006005 1.4e-162 577.4 382 75.7
Carub.0002s2777 Capsella rubella HOM05D005013 ORTHO05D006005 3.1e-162 576.2 389 72.8
THA.LOC104819998 Tarenaya hassleriana HOM05D005013 ORTHO05D006005 6.8e-162 575.1 375 74.9
TWI12G0488 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 2.0e-161 573.5 406 70.0
Rhsim08G0227500 Rhododendron simsii HOM05D005013 ORTHO05D006005 5.8e-161 572.0 379 75.7
Potri.003G048900 Populus trichocarpa HOM05D005013 ORTHO05D006005 1.4e-159 567.4 404 70.8
Haze_15847 Corylus avellana HOM05D005013 ORTHO05D006005 3.2e-159 566.2 403 73.0
MBI04_g36817_MAGBIO Magnolia biondii HOM05D005013 ORTHO05D006005 9.2e-159 564.7 373 75.1
Thhalv10018561m.g Eutrema salsugineum HOM05D005013 ORTHO05D006005 1.6e-158 563.9 386 72.3
Sp5g36040 Schrenkiella parvula HOM05D005013 ORTHO05D006005 2.3e-157 560.1 386 72.0
TWI75G0851 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 5.1e-157 558.9 408 69.6
Lj9C512T10 Lonicera japonica HOM05D005013 ORTHO05D006005 1.1e-156 557.8 446 66.4
HanXRQChr02g0032251 Helianthus annuus HOM05D005013 ORTHO05D006005 3.6e-155 552.7 407 68.3
Nitab4.5_0006902g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 3.6e-155 552.7 404 70.0
PSO513G0173 Papaver somniferum HOM05D005013 ORTHO05D006005 4.7e-155 552.4 432 64.8
PSO339G6278 Papaver somniferum HOM05D005013 ORTHO05D006005 5.2e-154 548.9 406 67.2
SalBow7G4596 Salvia bowleyana HOM05D005013 ORTHO05D006005 6.8e-154 548.5 410 67.3
Hund07600 Selenicereus undatus HOM05D005013 ORTHO05D006005 6.8e-154 548.5 404 69.1
Nn2g11173 Nelumbo nucifera HOM05D005013 ORTHO05D006005 8.9e-154 548.1 402 69.9
AT1G79730 Arabidopsis thaliana HOM05D005013 ORTHO05D006005 5.8e-153 545.4 377 71.9
Aqoxy2G02285 Aquilegia oxysepala HOM05D005013 ORTHO05D006005 1.3e-152 544.3 399 68.9
TAR623G0538 Trochodendron aralioides HOM05D005013 ORTHO05D006005 3.8e-152 542.7 344 76.7
MSTRG.4752 Avicennia marina HOM05D005013 ORTHO05D006005 8.4e-152 541.6 404 67.6
ECA247G2560 Erigeron canadensis HOM05D005013 ORTHO05D006005 1.1e-151 541.2 407 67.8
Duzib160G0376 Durio zibethinus HOM05D005013 ORTHO05D006005 7.1e-151 538.5 369 75.1
Oeu026781.2 Olea europaea HOM05D005013 ORTHO05D006005 2.3e-149 533.5 406 65.5
SGA_v2.0_scaffold4G02026 Striga asiatica HOM05D005013 ORTHO05D006005 5.1e-149 532.3 408 66.2
A10p33120 Brassica napus HOM05D005013 ORTHO05D006005 1.1e-148 531.2 373 70.0
unitig_52.g17097 Utricularia gibba HOM05D005013 ORTHO05D006005 1.5e-148 530.8 436 62.4
BcaC06g31994 Brassica carinata HOM05D005013 ORTHO05D006005 7.3e-148 528.5 373 70.2
C09p74080 Brassica napus HOM05D005013 ORTHO05D006005 7.3e-148 528.5 373 69.7
Lsat_1_v5_gn_1_36740 Lactuca sativa HOM05D005013 ORTHO05D006005 3.6e-147 526.2 394 66.5
Lsat_1_v5_gn_4_97461 Lactuca sativa HOM05D005013 ORTHO05D006005 6.2e-147 525.4 390 67.2
DCAR_016188 Daucus carota HOM05D005013 ORTHO05D006005 2.6e-145 520.0 407 64.6
arahy.Tifrunner.gnm1.ann1.YYV7TY Arachis hypogaea HOM05D005013 ORTHO05D006005 9.9e-145 518.1 423 66.7
EL10Ac9g21206 Beta vulgaris HOM05D005013 ORTHO05D006005 1.9e-143 513.8 404 65.3
BolC9t60139H Brassica oleracea HOM05D005013 ORTHO05D006005 1.9e-143 513.8 400 65.0
HanXRQChr09g0276241 Helianthus annuus HOM05D005013 ORTHO05D006005 1.6e-142 510.8 407 64.1
ATR0661G470 Amborella trichopoda HOM05D005013 ORTHO05D006005 6.0e-142 508.8 388 65.7
Os08g0157100 Oryza sativa ssp. japonica HOM05D005013 ORTHO05D006005 7.6e-137 491.9 410 61.5
Ah.01g005800 Amaranthus hybridus HOM05D005013 ORTHO05D006005 2.9e-136 490.0 404 63.1
AUR62022205 Chenopodium quinoa HOM05D005013 ORTHO05D006005 4.9e-136 489.2 404 62.4
AUR62031914 Chenopodium quinoa HOM05D005013 ORTHO05D006005 2.4e-135 486.9 379 64.9
CAN.G1143.12 Capsicum annuum HOM05D005013 ORTHO05D006005 1.5e-132 477.6 404 60.9
AL2G41830 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 3.7e-131 473.0 377 63.9
Zm00001eb415930 Zea mays HOM05D005013 ORTHO05D006005 1.1e-130 471.5 371 63.6
Dinv30436 Davidia involucrata HOM05D005013 ORTHO05D006005 7.1e-127 458.8 310 76.5
Migut.D00991 Erythranthe guttata HOM05D005013 ORTHO05D006005 1.9e-124 450.7 328 68.6
CDE12G0264 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 3.3e-124 449.9 416 58.4
Zm00001eb172540 Zea mays HOM05D005013 ORTHO05D006005 3.7e-115 419.9 324 63.9
Mapoly0123s0029 Marchantia polymorpha HOM05D005013 ORTHO05D006005 2.6e-113 413.7 381 57.7
Actinidia21716 Actinidia chinensis HOM05D005013 ORTHO05D006005 3.7e-107 393.3 286 71.0
BcaNung02135 Brassica carinata HOM05D005013 ORTHO05D006005 3.7e-107 393.3 356 58.7
Sc15g0001880 Simmondsia chinensis HOM05D005013 ORTHO05D006005 1.1e-106 391.7 280 71.1
AagrBONN_evm.TU.Sc2ySwM_117.3356 Anthoceros agrestis HOM05D005013 ORTHO05D006005 1.8e-106 391.0 388 55.9
SMO116G0383 Selaginella moellendorffii HOM05D005013 ORTHO05D006005 4.5e-105 386.3 356 56.7
Pp3c1_7460 Physcomitrium patens HOM05D005013 ORTHO05D006005 5.1e-101 372.9 353 54.4
TAR369G0672 Trochodendron aralioides HOM05D005013 ORTHO05D006005 7.2e-95 352.4 370 53.5
AL2G41840 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 6.5e-88 329.3 213 76.1
HPP92_015196 Vanilla planifolia HOM05D005013 ORTHO05D006005 4.8e-83 313.2 248 65.7
SHI11095 Sapria himalayana HOM05D005013 ORTHO05D006005 3.8e-80 303.5 386 47.2
CBR_g8033 Chara braunii HOM05D005013 ORTHO05D006005 1.1e-74 285.4 360 46.7
Cpa.g.sc109.1 Carica papaya HOM05D005013 ORTHO05D006005 5.4e-74 283.1 191 74.9
BraA10t45345Z Brassica rapa HOM05D005013 ORTHO05D006005 2.7e-73 280.8 173 79.8
CDE06G0689 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 7.7e-73 279.3 368 47.0
Ah.01g022080 Amaranthus hybridus HOM05D005013 ORTHO05D006005 3.4e-68 263.8 404 40.6
Cpa.g.sc109.3 Carica papaya HOM05D005013 ORTHO05D006005 4.5e-65 253.4 164 73.2
HPP92_015185 Vanilla planifolia HOM05D005013 ORTHO05D006005 1.4e-50 205.3 136 68.4
Lj5C53T3 Lonicera japonica HOM05D005013 ORTHO05D006005 5.8e-44 183.3 224 46.9
Oeu023599.1 Olea europaea HOM05D005013 ORTHO05D006005 4.9e-43 180.3 126 65.1
Migut.I00890 Erythranthe guttata HOM05D005013 ORTHO05D006005 3.2e-42 177.6 513 30.2
Psat4g155920 Pisum sativum HOM05D001854 ORTHO05D001800 2.4e-37 161.4 110 77.3
Psat4g155880 Pisum sativum HOM05D001854 ORTHO05D001800 5.2e-37 160.2 110 77.3
CARHR074670 Cardamine hirsuta HOM05D005013 ORTHO05D006005 1.5e-36 158.7 98 77.6
Cre12.g520250 Chlamydomonas reinhardtii HOM05D005013 ORTHO05D006005 5.1e-24 117.1 394 27.7
Lsat_1_v5_gn_6_46660 Lactuca sativa HOM05D005013 ORTHO05D006005 7.3e-23 113.2 95 60.0
CAN.G907.1 Capsicum annuum HOM05D005013 ORTHO05D006005 1.5e-20 105.5 86 59.3
MCO01G084 Micromonas commoda HOM05D005013 ORTHO05D006005 8.4e-19 99.8 353 26.9
Nn2g13410 Nelumbo nucifera HOM05D005013 ORTHO05D006005 1.9e-15 88.6 71 64.8
Oeu023601.1 Olea europaea HOM05D005013 ORTHO05D006005 5.6e-15 87.0 61 70.5
vmacro04324 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 4.8e-14 84.0 129 40.3
TAR560G0009 Trochodendron aralioides HOM05D005013 ORTHO05D006005 2.4e-13 81.6 58 72.4
CBR_g48652 Chara braunii HOM05D005013 ORTHO05D006005 3.1e-13 81.3 161 36.6
AL2G25330 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 1.5e-12 79.0 164 38.4
Oeu026780.1 Olea europaea HOM05D005013 ORTHO05D006005 5.8e-12 77.0 58 65.5
CAN.G1143.11 Capsicum annuum HOM05D005013 ORTHO05D115532 3.2e-10 71.2 44 72.7
CAN.G1143.9 Capsicum annuum HOM05D000602 ORTHO05D001147 1.2e-09 69.3 127 36.2
Lsat_1_v5_gn_1_14160 Lactuca sativa HOM05D005013 ORTHO05D006005 2.1e-09 68.6 106 41.5
SEGI_39677 Sequoiadendron giganteum HOM05D050634 ORTHO05D006005 1.3e-08 65.9 53 56.6
Lsat_1_v5_gn_5_133740 Lactuca sativa HOM05D000912 ORTHO05D021086 4.3e-07 60.8 61 55.7


User provided reference genes

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