Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_23241_v3 Cicer arietinum L. HOM05D005732 ORTHO05D007062 3.9e-91 338.2 179 100.0
Psat4g197440 Pisum sativum HOM05D005732 ORTHO05D007062 1.8e-72 276.2 198 75.3
Medtr8g013900 Medicago truncatula HOM05D005732 ORTHO05D007062 1.6e-68 263.1 205 71.7
VMungo0331G0354 Vigna mungo HOM05D005732 ORTHO05D007062 1.6e-68 263.1 211 68.2
Glyma.07G017000 Glycine max HOM05D005732 ORTHO05D007062 2.3e-67 259.2 201 70.6
Phvul.010G146500 Phaseolus vulgaris HOM05D005732 ORTHO05D007062 3.0e-67 258.8 199 69.8
Lj3g0008110 Lotus japonicus HOM05D005732 ORTHO05D007062 3.3e-66 255.4 196 70.4
Lalb_Chr04g0262901 Lupinus albus HOM05D005732 ORTHO05D007062 2.4e-64 249.2 211 65.9
arahy.Tifrunner.gnm1.ann1.U1FWF5 Arachis hypogaea HOM05D005732 ORTHO05D007062 1.4e-61 240.0 201 65.7
arahy.Tifrunner.gnm1.ann1.Z2G3LM Arachis hypogaea HOM05D005732 ORTHO05D007062 1.4e-61 240.0 201 65.7
TPR.G35018 Trifolium pratense HOM05D005732 ORTHO05D007062 8.2e-57 224.2 183 67.2
Haze_15828 Corylus avellana HOM05D005732 ORTHO05D007062 6.5e-54 214.5 212 58.0
Cfa003665 Carpinus fangiana HOM05D005732 ORTHO05D007062 8.4e-54 214.2 212 58.0
Lj5A55G45 Lonicera japonica HOM05D005732 ORTHO05D007062 6.1e-52 208.0 196 55.6
Dinv37994 Davidia involucrata HOM05D005732 ORTHO05D007062 5.1e-51 204.9 199 56.3
TAR626G0582 Trochodendron aralioides HOM05D005732 ORTHO05D007062 9.7e-50 200.7 189 57.7
Manes.04G132400 Manihot esculenta HOM05D005732 ORTHO05D007062 1.3e-49 200.3 194 55.7
CiPaw.01G232900 Carya illinoinensis HOM05D005732 ORTHO05D007062 1.6e-49 199.9 193 58.0
CSS0002541 Camellia sinensis var. sinensis HOM05D005732 ORTHO05D007062 2.2e-49 199.5 199 55.8
Potri.003G050400 Populus trichocarpa HOM05D005732 ORTHO05D007062 2.8e-49 199.1 200 54.5
CSS0032474 Camellia sinensis var. sinensis HOM05D005732 ORTHO05D007062 1.1e-48 197.2 199 55.3
Sabra03G0028400 Salix brachista HOM05D005732 ORTHO05D007062 3.1e-48 195.7 192 55.7
RcHm_v2.0_Chr2g0140051 Rosa chinensis HOM05D005732 ORTHO05D007062 1.2e-47 193.7 205 52.2
Migut.I00910 Erythranthe guttata HOM05D005732 ORTHO05D007062 1.5e-47 193.4 205 53.2
FAN02G4216 Fragaria x ananassa HOM05D005732 ORTHO05D007062 2.6e-47 192.6 205 54.1
MSTRG.22648 Avicennia marina HOM05D005732 ORTHO05D007062 3.4e-47 192.2 189 56.1
FAN05G5290 Fragaria x ananassa HOM05D005732 ORTHO05D007062 4.5e-47 191.8 171 59.6
FAN14G0018 Fragaria x ananassa HOM05D005732 ORTHO05D007062 7.7e-47 191.0 204 52.9
Manes.11G035100 Manihot esculenta HOM05D005732 ORTHO05D007062 1.3e-46 190.3 194 55.2
Aqoxy7G01470 Aquilegia oxysepala HOM05D005732 ORTHO05D007062 1.7e-46 189.9 200 50.5
FvH4_6g32160 Fragaria vesca HOM05D005732 ORTHO05D007062 2.2e-46 189.5 204 52.9
TWI18G0404 Tripterygium wilfordii HOM05D005732 ORTHO05D007062 2.2e-46 189.5 187 56.1
TAR383G0371 Trochodendron aralioides HOM05D005732 ORTHO05D007062 2.2e-46 189.5 189 53.4
Potri.001G188000 Populus trichocarpa HOM05D005732 ORTHO05D007062 5.0e-46 188.3 181 54.7
Hund06653 Selenicereus undatus HOM05D005732 ORTHO05D007062 1.9e-45 186.4 193 53.9
Eucgr.F03064 Eucalyptus grandis HOM05D005732 ORTHO05D007062 2.5e-45 186.0 200 52.0
CSS0006657 Camellia sinensis var. sinensis HOM05D005732 ORTHO05D007062 4.2e-45 185.3 192 53.1
Sabra01G0152800 Salix brachista HOM05D005732 ORTHO05D007062 4.2e-45 185.3 206 48.5
MBI04_g40322_MAGBIO Magnolia biondii HOM05D005732 ORTHO05D007062 5.5e-45 184.9 191 49.2
vmacro16985 Vaccinium macrocarpon HOM05D005732 ORTHO05D007062 9.4e-45 184.1 203 49.3
Cc04_g02710 Coffea canephora HOM05D005732 ORTHO05D007062 1.2e-44 183.7 188 53.7
Hma1.2p1_1689F.1_g297591 Hydrangea macrophylla HOM05D005732 ORTHO05D007062 1.2e-44 183.7 189 53.4
Actinidia09002 Actinidia chinensis HOM05D005732 ORTHO05D007062 2.1e-44 183.0 195 50.8
EL10Ac9g22102 Beta vulgaris HOM05D005732 ORTHO05D007062 2.7e-44 182.6 198 53.5
TWI75G0681 Tripterygium wilfordii HOM05D005732 ORTHO05D007062 2.7e-44 182.6 196 51.5
MD09G1205900 Malus domestica HOM05D005732 ORTHO05D007062 3.6e-44 182.2 205 50.2
AUR62022181 Chenopodium quinoa HOM05D005732 ORTHO05D007062 6.1e-44 181.4 190 53.2
AUR62031884 Chenopodium quinoa HOM05D005732 ORTHO05D007062 7.9e-44 181.0 189 54.0
GSVIVG01017014001 Vitis vinifera HOM05D005732 ORTHO05D007062 1.4e-43 180.3 147 63.9
FAN09G2308 Fragaria x ananassa HOM05D005732 ORTHO05D007062 1.8e-43 179.9 205 51.2
Rhsim12G0202300 Rhododendron simsii HOM05D005732 ORTHO05D007062 1.8e-43 179.9 198 51.5
QL05p020542 Quercus lobata HOM05D005732 ORTHO05D007062 2.3e-43 179.5 267 41.6
Nn2g11615 Nelumbo nucifera HOM05D005732 ORTHO05D007062 3.0e-43 179.1 189 51.3
Oeu050609.1 Olea europaea HOM05D005732 ORTHO05D007062 6.7e-43 177.9 198 50.5
SalBow1G6954 Salvia bowleyana HOM05D005732 ORTHO05D007062 1.5e-42 176.8 171 55.0
SalBow2G2342 Salvia bowleyana HOM05D005732 ORTHO05D007062 1.5e-42 176.8 171 55.0
Sc15g0001950 Simmondsia chinensis HOM05D005732 ORTHO05D007062 1.5e-42 176.8 197 51.3
PGR102G2433 Punica granatum HOM05D005732 ORTHO05D007062 2.5e-42 176.0 172 54.7
DCAR_016197 Daucus carota HOM05D005732 ORTHO05D007062 4.3e-42 175.3 196 50.0
Duzib192G0605 Durio zibethinus HOM05D005732 ORTHO05D007062 5.7e-42 174.9 184 54.9
Thecc.06G097400 Theobroma cacao HOM05D005732 ORTHO05D007062 9.7e-42 174.1 180 53.3
CiPaw.02G147000 Carya illinoinensis HOM05D005732 ORTHO05D007062 1.7e-41 173.3 212 50.0
MSTRG.11037 Avicennia marina HOM05D005732 ORTHO05D007062 3.7e-41 172.2 200 49.5
PSO173G0088 Papaver somniferum HOM05D005732 ORTHO05D007062 4.8e-41 171.8 190 48.9
CANSAT56G1056 Cannabis sativa HOM05D005732 ORTHO05D007062 8.2e-41 171.0 186 51.6
Lsat_1_v5_gn_4_99921 Lactuca sativa HOM05D005732 ORTHO05D007062 1.1e-40 170.6 174 50.6
Gohir.A02G118700 Gossypium hirsutum HOM05D005732 ORTHO05D007062 2.4e-40 169.5 188 52.1
Cpa.g.c29422 Carica papaya HOM05D005732 ORTHO05D007062 3.1e-40 169.1 171 55.0
Prupe.3G061300 Prunus persica HOM05D005732 ORTHO05D007062 6.9e-40 167.9 192 50.5
PSO832G1217 Papaver somniferum HOM05D005732 ORTHO05D007062 9.1e-40 167.5 204 47.1
Gohir.D03G059300 Gossypium hirsutum HOM05D005732 ORTHO05D007062 1.2e-39 167.2 169 53.8
Gorai.003G063300 Gossypium raimondii HOM05D005732 ORTHO05D007062 1.2e-39 167.2 165 55.2
MELO3C024451.2 Cucumis melo HOM05D005732 ORTHO05D007062 3.4e-39 165.6 172 52.3
HanXRQChr09g0275891 Helianthus annuus HOM05D005732 ORTHO05D007062 3.4e-39 165.6 176 50.0
Lsat_1_v5_gn_1_34600 Lactuca sativa HOM05D005732 ORTHO05D007062 4.5e-39 165.2 196 46.4
Sed0001710 Sechium edule HOM05D005732 ORTHO05D007062 4.5e-39 165.2 172 52.3
Sopen03g039690 Solanum pennellii HOM05D005732 ORTHO05D007062 1.0e-38 164.1 182 50.0
COL.COLO4_30485 Corchorus olitorius HOM05D000181 ORTHO05D008575 1.3e-38 163.7 164 54.3
Solyc03g120870.3 Solanum lycopersicum HOM05D005732 ORTHO05D007062 1.3e-38 163.7 167 52.1
ECA232G1272 Erigeron canadensis HOM05D000181 ORTHO05D008575 2.2e-38 162.9 187 48.1
Ciclev10026574m.g Citrus clementina HOM05D005732 ORTHO05D007062 2.9e-38 162.5 169 50.3
CsaV3_7G035420 Cucumis sativus L. HOM05D005732 ORTHO05D007062 2.9e-38 162.5 172 51.2
HanXRQChr16g0501231 Helianthus annuus HOM05D005732 ORTHO05D007062 3.8e-38 162.2 179 49.2
ECA247G0174 Erigeron canadensis HOM05D005732 ORTHO05D007062 5.0e-38 161.8 168 49.4
HanXRQChr02g0032191 Helianthus annuus HOM05D005732 ORTHO05D007062 5.0e-38 161.8 168 48.8
DCAR_026348 Daucus carota HOM05D005732 ORTHO05D007062 6.5e-38 161.4 180 48.9
Peaxi162Scf00038g00842 Petunia axillaris HOM05D005732 ORTHO05D007062 6.5e-38 161.4 199 44.7
PGSC0003DMG400002535 Solanum tuberosum HOM05D005732 ORTHO05D007062 1.4e-37 160.2 195 46.7
MBI04_g44953_MAGBIO Magnolia biondii HOM05D005732 ORTHO05D007062 1.9e-37 159.8 110 64.5
Lj9A511T51 Lonicera japonica HOM05D005732 ORTHO05D007062 3.2e-37 159.1 223 43.0
SGA_v2.0_scaffold69G23330 Striga asiatica HOM05D004877 ORTHO05D005942 7.9e-36 154.5 109 67.9
Atru.chr1.3497 Acer truncatum HOM05D005732 ORTHO05D007062 6.7e-35 151.4 168 50.6
C05p50190 Brassica napus HOM05D004877 ORTHO05D005942 9.7e-34 147.5 171 46.2
BolC5t33769H Brassica oleracea HOM05D004877 ORTHO05D005942 9.7e-34 147.5 171 46.2
BcaC05g28895 Brassica carinata HOM05D005732 ORTHO05D007062 1.7e-33 146.7 169 46.2
BcaB06g25723 Brassica carinata HOM05D005732 ORTHO05D007062 2.2e-33 146.4 170 46.5
Prupe.3G065500 Prunus persica HOM05D005732 ORTHO05D007062 3.7e-33 145.6 110 66.4
THA.LOC104817966 Tarenaya hassleriana HOM05D005732 ORTHO05D007062 1.4e-32 143.7 169 44.4
BraA05t22147Z Brassica rapa HOM05D005732 ORTHO05D007062 3.1e-32 142.5 171 44.4
AL3G29050 Arabidopsis lyrata HOM05D005732 ORTHO05D007062 4.1e-32 142.1 169 45.0
Thhalv10021518m.g Eutrema salsugineum HOM05D005732 ORTHO05D007062 4.1e-32 142.1 169 44.4
AT3G16300 Arabidopsis thaliana HOM05D005732 ORTHO05D007062 9.1e-32 141.0 170 44.1
Os01g0725400 Oryza sativa ssp. japonica HOM05D005732 ORTHO05D007062 2.0e-31 139.8 167 45.5
Sp3g14670 Schrenkiella parvula HOM05D005732 ORTHO05D007062 2.0e-31 139.8 168 44.6
Carub.0003s1605 Capsella rubella HOM05D005732 ORTHO05D007062 4.5e-31 138.7 169 43.8
Aa31LG8G3450 Aethionema arabicum HOM05D004877 ORTHO05D005942 7.7e-31 137.9 168 44.6
BraA03t13125Z Brassica rapa HOM05D005732 ORTHO05D007062 1.3e-30 137.1 168 44.6
A03p39750 Brassica napus HOM05D005732 ORTHO05D007062 3.8e-30 135.6 167 44.9
BcaB04g18894 Brassica carinata HOM05D005732 ORTHO05D007062 1.1e-29 134.0 169 43.2
BolC3t17024H Brassica oleracea HOM05D005732 ORTHO05D007062 1.9e-29 133.3 167 43.1
THA.LOC104813551 Tarenaya hassleriana HOM05D005732 ORTHO05D007062 1.9e-29 133.3 107 58.9
BcaC01g03830 Brassica carinata HOM05D005732 ORTHO05D007062 3.2e-29 132.5 167 42.5
BolC3t17097H Brassica oleracea HOM05D005732 ORTHO05D007062 3.2e-29 132.5 167 42.5
CARHR091510 Cardamine hirsuta HOM05D005732 ORTHO05D007062 4.2e-29 132.1 170 40.6
Lj9C524T15 Lonicera japonica HOM05D005732 ORTHO05D007062 4.2e-29 132.1 165 46.1
AT1G79780 Arabidopsis thaliana HOM05D005732 ORTHO05D007062 5.5e-29 131.7 179 42.5
unitig_46.g18459 Utricularia gibba HOM05D005732 ORTHO05D007062 7.2e-29 131.3 164 46.3
AL2G41770 Arabidopsis lyrata HOM05D005732 ORTHO05D007062 2.1e-28 129.8 178 42.1
C03p48190 Brassica napus HOM05D005732 ORTHO05D007062 4.7e-28 128.6 162 42.0
Aa31LG4G50 Aethionema arabicum HOM05D005732 ORTHO05D007062 8.0e-28 127.9 181 40.3
Carub.0002s2773 Capsella rubella HOM05D005732 ORTHO05D007062 1.8e-27 126.7 177 41.8
C06p28700 Brassica napus HOM05D005732 ORTHO05D007062 8.8e-27 124.4 174 39.7
MBI19_g26309_MAGBIO Magnolia biondii HOM05D005732 ORTHO05D007062 2.6e-26 122.9 152 47.4
Thhalv10019180m.g Eutrema salsugineum HOM05D005732 ORTHO05D007062 5.7e-26 121.7 165 40.0
Sp5g35990 Schrenkiella parvula HOM05D005732 ORTHO05D007062 1.3e-25 120.6 167 39.5
A07p26310 Brassica napus HOM05D005732 ORTHO05D007062 1.7e-25 120.2 165 40.0
BraA07t30275Z Brassica rapa HOM05D005732 ORTHO05D007062 1.7e-25 120.2 165 40.0
BolC6t38039H Brassica oleracea HOM05D005732 ORTHO05D007062 3.7e-25 119.0 167 39.5
Duzib160G0019 Durio zibethinus HOM05D005732 ORTHO05D007062 3.7e-25 119.0 130 53.8
ClCG09G000040 Citrullus lanatus HOM05D005732 ORTHO05D007062 8.2e-25 117.9 107 53.3
ATR0705G087 Amborella trichopoda HOM05D005732 ORTHO05D007062 6.1e-20 101.7 66 68.2
CDE02G4152 Ceratophyllum demersum HOM05D005732 ORTHO05D007062 9.8e-18 94.4 194 33.0
CARHR074750 Cardamine hirsuta HOM05D005732 ORTHO05D007062 2.4e-16 89.7 70 61.4
Actinidia39142 Actinidia chinensis HOM05D004877 ORTHO05D005942 4.7e-12 75.5 71 57.7
vmacro17018 Vaccinium macrocarpon HOM05D005732 ORTHO05D007062 1.8e-11 73.6 140 32.9
ATR0705G122 Amborella trichopoda HOM05D005732 ORTHO05D007062 6.8e-11 71.6 126 38.9
Sc15g0002000 Simmondsia chinensis HOM05D005732 ORTHO05D007062 7.5e-10 68.2 43 69.8
CARHR049040 Cardamine hirsuta HOM05D005732 ORTHO05D007062 1.8e-08 63.5 40 70.0
Dinv30452 Davidia involucrata HOM05D005732 ORTHO05D007062 1.3e-06 57.4 110 38.2


User provided reference genes

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