Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_23007_v3 Cicer arietinum L. HOM05D004871 ORTHO05D005755 4.6e-232 807.7 476 100.0
Medtr7g033720 Medicago truncatula HOM05D004871 ORTHO05D005755 1.8e-172 609.8 478 78.0
Lj1g0007322 Lotus japonicus HOM05D004871 ORTHO05D005755 6.6e-154 548.1 486 71.4
Glyma.19G068600 Glycine max HOM05D004871 ORTHO05D005755 5.8e-142 508.4 477 67.7
CiPaw.03G043700 Carya illinoinensis HOM05D004871 ORTHO05D005755 1.8e-135 486.9 482 56.2
QL02p074723 Quercus lobata HOM05D004871 ORTHO05D005755 3.2e-132 476.1 485 60.4
Phvul.008G154600 Phaseolus vulgaris HOM05D004871 ORTHO05D005755 4.1e-132 475.7 477 65.8
Lalb_Chr24g0402861 Lupinus albus HOM05D004871 ORTHO05D005755 1.6e-131 473.8 486 59.7
Cfa007369 Carpinus fangiana HOM05D004871 ORTHO05D005755 7.8e-131 471.5 483 60.2
Prupe.3G291600 Prunus persica HOM05D004871 ORTHO05D005755 3.0e-130 469.5 486 58.2
FAN02G2556 Fragaria x ananassa HOM05D004871 ORTHO05D005755 8.6e-130 468.0 479 62.6
FAN14G1702 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.1e-129 467.6 479 62.2
RcHm_v2.0_Chr2g0172801 Rosa chinensis HOM05D004871 ORTHO05D005755 1.1e-129 467.6 479 54.9
Haze_14739 Corylus avellana HOM05D004871 ORTHO05D005755 1.5e-129 467.2 482 59.1
FvH4_6g51200 Fragaria vesca HOM05D004871 ORTHO05D005755 1.5e-129 467.2 479 62.6
Ciclev10015079m.g Citrus clementina HOM05D004871 ORTHO05D005755 4.7e-128 462.2 490 52.4
Lalb_Chr14g0362771 Lupinus albus HOM05D004871 ORTHO05D005755 5.2e-127 458.8 480 59.4
MD09G1027100 Malus domestica HOM05D004871 ORTHO05D005755 1.7e-125 453.8 478 60.5
Potri.017G069800 Populus trichocarpa HOM05D004871 ORTHO05D005755 2.2e-125 453.4 488 52.7
CiPaw.04G028400 Carya illinoinensis HOM05D004871 ORTHO05D005755 5.4e-124 448.7 483 57.8
MD17G1027100 Malus domestica HOM05D004871 ORTHO05D005755 7.1e-124 448.4 483 53.0
Duzib147G1217 Durio zibethinus HOM05D004871 ORTHO05D005755 1.2e-123 447.6 487 52.0
Atru.chr6.2393 Acer truncatum HOM05D004871 ORTHO05D005755 1.3e-122 444.1 489 52.1
Eucgr.J02242 Eucalyptus grandis HOM05D004871 ORTHO05D005755 1.7e-122 443.7 487 56.3
Thecc.04G017200 Theobroma cacao HOM05D004871 ORTHO05D005755 1.5e-121 440.7 420 57.6
Sabra17G0062100 Salix brachista HOM05D004871 ORTHO05D005755 1.1e-119 434.5 491 54.8
Gohir.A05G355800 Gossypium hirsutum HOM05D004871 ORTHO05D005755 4.0e-119 432.6 484 51.4
CANSAT64G1143 Cannabis sativa HOM05D004871 ORTHO05D005755 5.2e-119 432.2 487 51.5
Manes.15G150700 Manihot esculenta HOM05D004871 ORTHO05D005755 1.5e-118 430.6 487 52.2
Gorai.012G064200 Gossypium raimondii HOM05D004871 ORTHO05D005755 2.6e-118 429.9 484 52.3
Gohir.D04G057500 Gossypium hirsutum HOM05D004871 ORTHO05D005755 3.4e-118 429.5 486 51.6
Gorai.001G265000 Gossypium raimondii HOM05D004871 ORTHO05D005755 2.2e-117 426.8 479 50.5
TWI12G0316 Tripterygium wilfordii HOM05D004871 ORTHO05D005755 3.8e-117 426.0 480 50.8
Gohir.D07G229900 Gossypium hirsutum HOM05D004871 ORTHO05D005755 6.4e-117 425.2 480 50.2
Cpa.g.sc130.82 Carica papaya HOM05D004871 ORTHO05D005755 8.4e-117 424.9 487 51.7
Psat3g166880 Pisum sativum HOM05D004871 ORTHO05D005755 2.7e-115 419.9 327 76.5
COL.COLO4_29115 Corchorus olitorius HOM05D004871 ORTHO05D005755 5.1e-114 415.6 482 50.6
Hma1.2p1_2120F.1_g314420 Hydrangea macrophylla HOM05D004871 ORTHO05D005755 5.1e-114 415.6 477 50.7
THA.LOC104825322 Tarenaya hassleriana HOM05D004871 ORTHO05D005755 4.3e-113 412.5 481 56.8
Glyma.16G071200 Glycine max HOM05D004871 ORTHO05D005755 7.3e-113 411.8 478 61.1
ClCG10G013890 Citrullus lanatus HOM05D004871 ORTHO05D005755 1.4e-111 407.5 480 49.0
PGR083G0754 Punica granatum HOM05D004871 ORTHO05D005755 6.9e-111 405.2 482 49.2
Eucgr.H01852 Eucalyptus grandis HOM05D004871 ORTHO05D005755 9.9e-110 401.4 489 52.8
Nn3g16731 Nelumbo nucifera HOM05D004871 ORTHO05D005755 1.6e-107 394.0 499 47.5
Nn3g16736 Nelumbo nucifera HOM05D004871 ORTHO05D005755 1.6e-107 394.0 499 47.5
Sopen02g031150 Solanum pennellii HOM05D004871 ORTHO05D005755 1.8e-106 390.6 476 48.7
PGSC0003DMG400012633 Solanum tuberosum HOM05D004871 ORTHO05D005755 1.8e-106 390.6 477 48.4
CsaV3_3G042800 Cucumis sativus L. HOM05D004871 ORTHO05D005755 3.3e-105 386.3 479 48.0
PSO832G2649 Papaver somniferum HOM05D004871 ORTHO05D005755 4.3e-105 386.0 495 50.5
CSS0032397 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 1.3e-104 384.4 413 54.7
MELO3C026581.2 Cucumis melo HOM05D004871 ORTHO05D005755 2.1e-104 383.6 493 47.9
CAN.G473.11 Capsicum annuum HOM05D004871 ORTHO05D005755 1.4e-103 380.9 480 48.3
FAN05G1656 Fragaria x ananassa HOM05D004871 ORTHO05D005755 4.0e-103 379.4 361 57.9
PSO063G1038 Papaver somniferum HOM05D004871 ORTHO05D005755 6.9e-103 378.6 488 49.8
DCAR_021722 Daucus carota HOM05D004871 ORTHO05D005755 2.6e-102 376.7 476 45.0
Sed0007166 Sechium edule HOM05D004871 ORTHO05D005755 2.9e-101 373.2 475 46.9
Peaxi162Scf00129g00168 Petunia axillaris HOM05D004871 ORTHO05D005755 4.9e-101 372.5 479 45.7
Cc07_g01680 Coffea canephora HOM05D004871 ORTHO05D005755 6.4e-101 372.1 478 50.6
TAR622G0125 Trochodendron aralioides HOM05D004871 ORTHO05D005755 3.2e-100 369.8 417 50.8
BraA04t17009Z Brassica rapa HOM05D004871 ORTHO05D005755 1.6e-99 367.5 483 46.0
Eucgr.L00043 Eucalyptus grandis HOM05D004871 ORTHO05D005755 2.1e-99 367.1 489 48.5
Oeu054623.1 Olea europaea HOM05D004871 ORTHO05D005755 1.8e-98 364.0 483 46.4
Sc16g0004350 Simmondsia chinensis HOM05D004871 ORTHO05D005755 6.7e-98 362.1 485 52.2
A04p13500 Brassica napus HOM05D004871 ORTHO05D005755 2.1e-96 357.1 417 49.9
Sp7g01440 Schrenkiella parvula HOM05D004871 ORTHO05D005755 2.8e-96 356.7 496 46.6
Dinv35106 Davidia involucrata HOM05D004871 ORTHO05D005755 3.7e-96 356.3 481 49.9
Lju41C42T3 Lonicera japonica HOM05D004871 ORTHO05D005755 3.7e-96 356.3 421 48.9
C04p47280 Brassica napus HOM05D004871 ORTHO05D005755 3.1e-95 353.2 483 48.7
BolC4t26328H Brassica oleracea HOM05D004871 ORTHO05D005755 3.1e-95 353.2 483 48.7
Thhalv10028043m.g Eutrema salsugineum HOM05D004871 ORTHO05D005755 5.3e-95 352.4 491 45.2
Rhsim08G0050600 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.5e-94 350.9 492 48.6
Aa31LG9G1150 Aethionema arabicum HOM05D004871 ORTHO05D005755 2.0e-94 350.5 435 48.5
Peaxi162Scf00129g01652 Petunia axillaris HOM05D004871 ORTHO05D005755 1.4e-92 344.4 409 48.7
Oeu018139.1 Olea europaea HOM05D004871 ORTHO05D005755 2.1e-91 340.5 482 44.0
CARHR261520 Cardamine hirsuta HOM05D004871 ORTHO05D005755 3.5e-91 339.7 423 48.7
vmacro23390 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 3.0e-90 336.7 484 43.2
TAR371G0422 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.1e-89 334.7 478 50.8
vmacro18283 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 1.5e-89 334.3 484 43.0
VMungo1383G0924 Vigna mungo HOM05D004871 ORTHO05D005755 1.5e-89 334.3 287 71.1
MSTRG.24039 Avicennia marina HOM05D004871 ORTHO05D005755 1.9e-89 334.0 413 47.5
Lj7C599T13 Lonicera japonica HOM05D004871 ORTHO05D005755 7.4e-89 332.0 498 44.0
Migut.H00077 Erythranthe guttata HOM05D004871 ORTHO05D005755 2.1e-88 330.5 484 45.5
Rhsim08G0050100 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.8e-88 330.1 477 48.4
AT5G40470 Arabidopsis thaliana HOM05D004871 ORTHO05D005755 6.3e-88 328.9 500 43.4
TAR371G0152 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.8e-87 327.4 476 50.2
vmacro23391 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 1.8e-87 327.4 477 49.5
Dinv33442 Davidia involucrata HOM05D005666 ORTHO05D007183 1.2e-86 324.7 334 51.5
Aqoxy5G03783 Aquilegia oxysepala HOM05D004871 ORTHO05D005755 1.3e-85 321.2 495 44.2
Lsat_1_v5_gn_0_47681 Lactuca sativa HOM05D004871 ORTHO05D005755 1.7e-85 320.9 477 43.2
SGA_v2.0_scaffold18G08277 Striga asiatica HOM05D004871 ORTHO05D005755 1.7e-85 320.9 482 42.7
HanXRQChr17g0548491 Helianthus annuus HOM05D004871 ORTHO05D005755 5.5e-84 315.8 475 40.8
Rhsim08G0048900 Rhododendron simsii HOM05D004871 ORTHO05D005755 5.5e-84 315.8 478 49.0
SalBow1G4779 Salvia bowleyana HOM05D004871 ORTHO05D005755 2.1e-83 313.9 480 41.0
Carub.0007s3511 Capsella rubella HOM05D004871 ORTHO05D005755 2.7e-83 313.5 429 46.2
AL7G49360 Arabidopsis lyrata HOM05D004871 ORTHO05D005755 3.6e-83 313.2 440 46.1
SalBow2G2412 Salvia bowleyana HOM05D004871 ORTHO05D005755 4.6e-83 312.8 415 45.1
Nitab4.5_0002468g0010 Nicotiana tabacum HOM05D004871 ORTHO05D005755 1.3e-82 311.2 336 50.0
Gohir.A07G223200 Gossypium hirsutum HOM05D004871 ORTHO05D005755 3.9e-82 309.7 373 49.6
Atru.chr6.2392 Acer truncatum HOM05D004871 ORTHO05D005755 6.7e-82 308.9 312 52.2
CDE08G0710 Ceratophyllum demersum HOM05D004871 ORTHO05D005755 8.7e-82 308.5 411 45.0
Rhsim08G0049600 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.9e-81 307.4 483 44.9
Rhsim08G0049200 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.5e-81 307.0 292 67.1
TAR371G1027 Trochodendron aralioides HOM05D004871 ORTHO05D005755 4.3e-81 306.2 480 44.6
Rhsim08G0050200 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.2e-80 303.9 480 49.0
GSVIVG01032408001 Vitis vinifera HOM05D004871 ORTHO05D005755 1.8e-79 300.8 247 59.5
ATR0686G244 Amborella trichopoda HOM05D004871 ORTHO05D005755 1.2e-78 298.1 474 43.9
Rhsim08G0049400 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.2e-78 298.1 426 45.5
HPP92_009906 Vanilla planifolia HOM05D004871 ORTHO05D005755 5.9e-78 295.8 440 43.6
Nitab4.5_0003318g0120 Nicotiana tabacum HOM05D004871 ORTHO05D005755 1.0e-77 295.0 336 47.3
Rhsim08G0049300 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.3e-77 294.7 504 39.3
vmacro18285 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 3.8e-77 293.1 479 46.3
vmacro23392 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 3.8e-77 293.1 479 46.3
HanXRQChr15g0475301 Helianthus annuus HOM05D004871 ORTHO05D005755 3.9e-74 283.1 478 42.5
vmacro18284 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 4.8e-72 276.2 359 52.6
TPR.G1076 Trifolium pratense HOM05D004871 ORTHO05D005755 1.8e-71 274.2 466 50.2
BcaB06g27513 Brassica carinata HOM05D004871 ORTHO05D005755 2.4e-71 273.9 386 45.9
FAN09G0732 Fragaria x ananassa HOM05D000795 ORTHO05D005755 4.5e-70 269.6 248 71.4
unitig_899.g14805 Utricularia gibba HOM05D004871 ORTHO05D005755 4.5e-70 269.6 415 41.4
Rhsim08G0050500 Rhododendron simsii HOM05D004871 ORTHO05D005755 6.5e-69 265.8 484 46.7
Zm00001eb246170 Zea mays HOM05D004871 ORTHO05D005755 5.5e-68 262.7 420 40.5
Rhsim08G0050000 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.4e-66 258.1 480 41.9
TAR633G0371 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.5e-65 254.6 341 44.9
Rhsim08G0050400 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.2e-64 250.8 420 43.3
Nn1g05920 Nelumbo nucifera HOM05D004871 ORTHO05D005755 5.3e-63 246.1 256 53.9
Rhsim08G0049900 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.7e-56 224.6 477 39.0
Peaxi162Scf00129g01633 Petunia axillaris HOM05D004871 ORTHO05D005755 1.4e-55 221.5 190 54.2
Rhsim08G0049500 Rhododendron simsii HOM05D004871 ORTHO05D005755 4.5e-54 216.5 297 43.8
SMO298G0062 Selaginella moellendorffii HOM05D004871 ORTHO05D005755 1.1e-52 211.8 413 35.6
Actinidia35771 Actinidia chinensis HOM05D004871 ORTHO05D005755 5.5e-52 209.5 334 43.4
TAR371G0343 Trochodendron aralioides HOM05D004871 ORTHO05D005755 4.2e-44 183.3 176 54.5
CSS0034270 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 7.2e-44 182.6 169 79.9
TAR374G1232 Trochodendron aralioides HOM05D004871 ORTHO05D005755 2.8e-43 180.6 154 57.8
Cc00_g26710 Coffea canephora HOM05D004871 ORTHO05D005755 3.6e-43 180.3 292 44.5
FAN05G3698 Fragaria x ananassa HOM05D004871 ORTHO05D005755 6.1e-43 179.5 168 79.2
Rhsim08G0050300 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.0e-41 174.5 253 41.9
FAN27G1866 Fragaria x ananassa HOM05D004871 ORTHO05D005755 2.3e-34 151.0 120 64.2
ATR0589G064 Amborella trichopoda HOM05D004871 ORTHO05D005755 3.0e-34 150.6 321 36.4
FAN09G0037 Fragaria x ananassa HOM05D004871 ORTHO05D005755 3.4e-33 147.1 117 65.8
TAR629G3424 Trochodendron aralioides HOM05D004871 ORTHO05D005755 4.1e-31 140.2 235 38.7
BcaB07g32983 Brassica carinata HOM05D004871 ORTHO05D005755 8.6e-29 132.5 126 54.0
CSS0039002 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 1.1e-28 132.1 86 76.7
ATR0762G040 Amborella trichopoda HOM05D004871 ORTHO05D005755 4.0e-26 123.6 272 35.3
FAN05G3297 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.7e-24 118.2 150 45.3
CSS0033026 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 1.2e-22 112.1 72 77.8
Rhsim08G0180400 Rhododendron simsii HOM05D001576 ORTHO05D000401 1.2e-22 112.1 105 53.3
Solyc02g086440.4 Solanum lycopersicum HOM05D004871 ORTHO05D005755 2.0e-22 111.3 202 43.6
FAN14G0631 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.8e-18 98.2 89 57.3
HanXRQChr07g0188231 Helianthus annuus HOM05D004871 ORTHO05D005755 1.8e-18 98.2 149 36.9
Nitab4.5_0007441g0020 Nicotiana tabacum HOM05D004871 ORTHO05D005755 6.4e-16 89.7 79 51.9
TAR314G0001 Trochodendron aralioides HOM05D004871 ORTHO05D005755 8.3e-16 89.4 121 41.3
TAR314G0006 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.4e-07 62.0 90 38.9
Carub.0007s2643 Capsella rubella HOM05D002762 ORTHO05D004643 3.5e-06 57.4 271 27.3
A09p05510 Brassica napus HOM05D002125 ORTHO05D002105 7.8e-06 56.2 215 24.2


User provided reference genes

Program Settings