Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_22639_v3 Cicer arietinum L. HOM05D010183 ORTHO05D012357 2.2e-167 592.4 350 100.0
Psat4g118200 Pisum sativum HOM05D010183 ORTHO05D012357 3.9e-39 166.4 365 37.8
Psat4g118240 Pisum sativum HOM05D010183 ORTHO05D012357 6.5e-34 149.1 365 34.8
Medtr4g050020 Medicago truncatula HOM05D010183 ORTHO05D012357 6.8e-31 139.0 359 35.7
Medtr4g049980 Medicago truncatula HOM05D010183 ORTHO05D012357 5.7e-30 136.0 360 35.3
Psat4g118320 Pisum sativum HOM05D010183 ORTHO05D012357 2.2e-26 124.0 160 47.5
Psat4g118160 Pisum sativum HOM05D010183 ORTHO05D012357 3.2e-25 120.2 343 37.6
Medtr8g067310 Medicago truncatula HOM05D010183 ORTHO05D012357 5.7e-22 109.4 161 44.7
TPR.G16049 Trifolium pratense HOM05D010183 ORTHO05D012357 1.7e-18 97.8 384 30.2
Medtr4g049900 Medicago truncatula HOM05D010183 ORTHO05D012357 8.6e-18 95.5 468 30.6
Medtr4g051870 Medicago truncatula HOM05D010183 ORTHO05D012357 3.0e-15 87.0 103 57.3
Medtr4g050630 Medicago truncatula HOM05D010183 ORTHO05D012357 1.2e-14 85.1 146 35.6
Medtr4g050660 Medicago truncatula HOM05D010183 ORTHO05D012357 1.2e-14 85.1 146 35.6
FvH4_4g21960 Fragaria vesca HOM05D002068 ORTHO05D002029 2.0e-14 84.3 174 37.4
TPR.G40524 Trifolium pratense HOM05D010183 ORTHO05D012357 2.0e-14 84.3 124 41.1
Prupe.5G036600 Prunus persica HOM05D002068 ORTHO05D002029 2.6e-14 84.0 173 38.7
Potri.001G142400 Populus trichocarpa HOM05D002068 ORTHO05D002029 4.4e-14 83.2 180 37.2
CANSAT21G2072 Cannabis sativa HOM05D002068 ORTHO05D002029 5.7e-14 82.8 166 36.7
Ca_06078_v3 Cicer arietinum L. HOM05D002068 ORTHO05D002029 5.7e-14 82.8 172 37.8
TWI81G0802 Tripterygium wilfordii HOM05D002068 ORTHO05D002029 7.5e-14 82.4 396 30.3
Psat4g118120 Pisum sativum HOM05D010183 ORTHO05D012357 9.8e-14 82.0 159 37.7
Medtr4g049930 Medicago truncatula HOM05D010183 ORTHO05D012357 1.3e-13 81.6 149 38.3
Medtr4g049970 Medicago truncatula HOM05D010183 ORTHO05D012357 1.7e-13 81.3 299 31.1
Haze_08229 Corylus avellana HOM05D002068 ORTHO05D002029 2.2e-13 80.9 175 38.9
QL12p005199 Quercus lobata HOM05D002068 ORTHO05D002029 6.3e-13 79.3 171 38.6
CiPaw.12G063800 Carya illinoinensis HOM05D002068 ORTHO05D002029 8.3e-13 79.0 179 36.9
Cfa012439 Carpinus fangiana HOM05D002068 ORTHO05D002029 1.4e-12 78.2 176 36.4
FAN07G0940 Fragaria x ananassa HOM05D002068 ORTHO05D002029 1.4e-12 78.2 174 36.2
Sabra01G0111200 Salix brachista HOM05D002068 ORTHO05D002029 1.4e-12 78.2 166 34.9
TWI60G1070 Tripterygium wilfordii HOM05D002068 ORTHO05D002029 1.4e-12 78.2 178 36.0
Atru.chr6.1710 Acer truncatum HOM05D002068 ORTHO05D002029 1.8e-12 77.8 189 33.3
CiPaw.11G093300 Carya illinoinensis HOM05D002068 ORTHO05D002029 2.4e-12 77.4 175 36.0
RcHm_v2.0_Chr7g0209711 Rosa chinensis HOM05D002068 ORTHO05D002029 2.4e-12 77.4 175 37.1
Sed0013007 Sechium edule HOM05D002068 ORTHO05D002029 4.1e-12 76.6 165 35.2
Lj2g0016669 Lotus japonicus HOM05D002068 ORTHO05D002029 7.0e-12 75.9 176 34.7
MD14G1120900 Malus domestica HOM05D002068 ORTHO05D002029 7.0e-12 75.9 390 29.0
Potri.003G091800 Populus trichocarpa HOM05D002068 ORTHO05D002029 9.2e-12 75.5 180 33.3
Phvul.002G141800 Phaseolus vulgaris HOM05D002068 ORTHO05D002029 1.6e-11 74.7 387 30.2
Lj8C300T9 Lonicera japonica HOM05D002068 ORTHO05D002029 2.0e-11 74.3 165 32.7
Peaxi162Scf00460g00033 Petunia axillaris HOM05D002068 ORTHO05D002029 2.0e-11 74.3 175 36.0
BcaC02g11626 Brassica carinata HOM05D002068 ORTHO05D002029 3.5e-11 73.6 179 34.1
C04p12950 Brassica napus HOM05D002068 ORTHO05D002029 3.5e-11 73.6 179 34.1
Thecc.03G227900 Theobroma cacao HOM05D002068 ORTHO05D002029 3.5e-11 73.6 181 35.4
Psat2g136560 Pisum sativum HOM05D002068 ORTHO05D002029 4.5e-11 73.2 169 34.3
Sed0021104 Sechium edule HOM05D002068 ORTHO05D002029 4.5e-11 73.2 178 34.3
GSVIVG01013160001 Vitis vinifera HOM05D002068 ORTHO05D002029 5.9e-11 72.8 150 36.7
Sabra03G0061400 Salix brachista HOM05D002068 ORTHO05D002029 1.7e-10 71.2 161 34.2
Ciclev10012154m.g Citrus clementina HOM05D002068 ORTHO05D002029 2.3e-10 70.9 188 29.8
DCAR_008272 Daucus carota HOM05D002068 ORTHO05D002029 2.3e-10 70.9 178 35.4
Glyma.08G272100 Glycine max HOM05D002068 ORTHO05D002029 2.3e-10 70.9 171 33.9
Gohir.D03G171200 Gossypium hirsutum HOM05D002068 ORTHO05D002029 2.3e-10 70.9 186 34.4
Gorai.003G181800 Gossypium raimondii HOM05D002068 ORTHO05D002029 2.3e-10 70.9 186 34.4
TAR375G0554 Trochodendron aralioides HOM05D002068 ORTHO05D002029 2.9e-10 70.5 152 34.9
VMungo1215G2655 Vigna mungo HOM05D002068 ORTHO05D002029 2.9e-10 70.5 384 29.4
MELO3C013853.2 Cucumis melo HOM05D002068 ORTHO05D002029 3.9e-10 70.1 180 34.4
CsaV3_3G001730 Cucumis sativus L. HOM05D002068 ORTHO05D002029 3.9e-10 70.1 180 34.4
Dinv25215 Davidia involucrata HOM05D002068 ORTHO05D002029 3.9e-10 70.1 164 33.5
MD06G1101200 Malus domestica HOM05D002068 ORTHO05D002029 3.9e-10 70.1 177 33.9
Oeu020141.1 Olea europaea HOM05D002068 ORTHO05D002029 3.9e-10 70.1 165 32.7
Duzib084G1376 Durio zibethinus HOM05D002068 ORTHO05D002029 5.0e-10 69.7 180 35.6
Lalb_Chr16g0381391 Lupinus albus HOM05D002068 ORTHO05D002029 5.0e-10 69.7 165 33.3
Solyc06g061190.1 Solanum lycopersicum HOM05D002068 ORTHO05D002029 5.0e-10 69.7 188 34.0
TWI15G0848 Tripterygium wilfordii HOM05D002068 ORTHO05D002029 5.0e-10 69.7 180 33.3
A05p10530 Brassica napus HOM05D002068 ORTHO05D002029 6.6e-10 69.3 173 34.7
BraA05t19991Z Brassica rapa HOM05D002068 ORTHO05D002029 8.6e-10 68.9 157 33.8
VMungo0251G3624 Vigna mungo HOM05D002068 ORTHO05D002029 8.6e-10 68.9 385 27.8
A04p26780 Brassica napus HOM05D002068 ORTHO05D002029 1.1e-09 68.6 154 35.1
THA.LOC104807950 Tarenaya hassleriana HOM05D002068 ORTHO05D002029 1.1e-09 68.6 157 36.3
Medtr4g050620 Medicago truncatula HOM05D010183 ORTHO05D012357 1.5e-09 68.2 90 55.6
Medtr4g050650 Medicago truncatula HOM05D010183 ORTHO05D012357 1.5e-09 68.2 90 55.6
BolC4t27901H Brassica oleracea HOM05D002068 ORTHO05D002029 1.9e-09 67.8 154 34.4
Cc08_g02760 Coffea canephora HOM05D002068 ORTHO05D002029 1.9e-09 67.8 166 34.9
Hma1.2p1_1063F.1_g253550 Hydrangea macrophylla HOM05D002068 ORTHO05D002029 1.9e-09 67.8 171 33.9
Oeu006980.1 Olea europaea HOM05D002068 ORTHO05D002029 1.9e-09 67.8 163 31.9
Oeu006981.1 Olea europaea HOM05D002068 ORTHO05D002029 1.9e-09 67.8 163 31.9
Manes.05G009900 Manihot esculenta HOM05D002068 ORTHO05D002029 2.5e-09 67.4 166 31.9
Medtr5g030570 Medicago truncatula HOM05D002068 ORTHO05D002029 2.5e-09 67.4 175 34.9
Sopen06g021390 Solanum pennellii HOM05D002068 ORTHO05D002029 2.5e-09 67.4 188 33.5
BraA04t18182Z Brassica rapa HOM05D002068 ORTHO05D002029 3.3e-09 67.0 155 34.2
CDE03G0421 Ceratophyllum demersum HOM05D002068 ORTHO05D002029 3.3e-09 67.0 174 32.2
TPR.G16070 Trifolium pratense HOM05D010183 ORTHO05D012357 3.3e-09 67.0 387 25.8
Ah.12g055030 Amaranthus hybridus HOM05D002068 ORTHO05D002029 4.3e-09 66.6 148 35.8
C04p64180 Brassica napus HOM05D002068 ORTHO05D002029 4.3e-09 66.6 156 34.0
COL.COLO4_13969 Corchorus olitorius HOM05D002068 ORTHO05D002029 4.3e-09 66.6 195 32.3
Duzib068G0736 Durio zibethinus HOM05D002068 ORTHO05D002029 4.3e-09 66.6 176 33.5
Gorai.006G216500 Gossypium raimondii HOM05D002068 ORTHO05D002029 4.3e-09 66.6 153 35.3
PGSC0003DMG400002107 Solanum tuberosum HOM05D002068 ORTHO05D002029 4.3e-09 66.6 189 32.3
BolC4t22938H Brassica oleracea HOM05D002068 ORTHO05D002029 5.6e-09 66.2 358 30.2
Hma1.2p1_2704F.1_g327150 Hydrangea macrophylla HOM05D002068 ORTHO05D002029 5.6e-09 66.2 171 33.3
Carub.0004s1693 Capsella rubella HOM05D002068 ORTHO05D002029 7.3e-09 65.9 173 32.4
Medtr4g046690 Medicago truncatula HOM05D010183 ORTHO05D012357 7.3e-09 65.9 155 34.8
TPR.G1043 Trifolium pratense HOM05D002068 ORTHO05D002029 7.3e-09 65.9 167 33.5
AT2G35230 Arabidopsis thaliana HOM05D002068 ORTHO05D002029 9.5e-09 65.5 355 36.1
BcaB06g28833 Brassica carinata HOM05D002068 ORTHO05D002029 9.5e-09 65.5 158 32.9
Lalb_Chr05g0216091 Lupinus albus HOM05D002068 ORTHO05D002029 1.2e-08 65.1 399 26.8
BraA06t27436Z Brassica rapa HOM05D002068 ORTHO05D002029 1.6e-08 64.7 150 36.7
CSS0014279 Camellia sinensis var. sinensis HOM05D002068 ORTHO05D002029 1.6e-08 64.7 166 33.1
BcaC01g05736 Brassica carinata HOM05D002068 ORTHO05D002029 2.1e-08 64.3 155 28.4
BcaC02g07727 Brassica carinata HOM05D002068 ORTHO05D002029 2.1e-08 64.3 156 34.0
Psat4g118360 Pisum sativum HOM05D010183 ORTHO05D012357 2.1e-08 64.3 104 42.3
A06p45670 Brassica napus HOM05D002068 ORTHO05D002029 2.8e-08 63.9 150 36.7
ATR0665G256 Amborella trichopoda HOM05D002068 ORTHO05D002029 3.6e-08 63.5 157 32.5
vmacro00330 Vaccinium macrocarpon HOM05D002068 ORTHO05D002029 3.6e-08 63.5 394 26.1
A03p19480 Brassica napus HOM05D002068 ORTHO05D002029 4.7e-08 63.2 155 28.4
BraA03t11201Z Brassica rapa HOM05D002068 ORTHO05D002029 4.7e-08 63.2 155 28.4
Thhalv10001010m.g Eutrema salsugineum HOM05D002068 ORTHO05D002029 4.7e-08 63.2 136 36.0
Aqoxy3G02351 Aquilegia oxysepala HOM05D002068 ORTHO05D002029 6.1e-08 62.8 168 31.0
arahy.Tifrunner.gnm1.ann1.RMYT06 Arachis hypogaea HOM05D002068 ORTHO05D002029 6.1e-08 62.8 402 27.4
CSS0037727 Camellia sinensis var. sinensis HOM05D002068 ORTHO05D002029 6.1e-08 62.8 380 26.1
CSS0039799 Camellia sinensis var. sinensis HOM05D002068 ORTHO05D002029 6.1e-08 62.8 380 26.1
Aa31LG9G6120 Aethionema arabicum HOM05D002068 ORTHO05D002029 8.0e-08 62.4 136 34.6
HanXRQChr13g0414131 Helianthus annuus HOM05D002068 ORTHO05D002029 8.0e-08 62.4 189 31.7
Aa31LG2G13360 Aethionema arabicum HOM05D002068 ORTHO05D002029 1.0e-07 62.0 176 34.1
CARHR129400 Cardamine hirsuta HOM05D002068 ORTHO05D002029 1.0e-07 62.0 174 34.5
Migut.E00932 Erythranthe guttata HOM05D002068 ORTHO05D002029 1.0e-07 62.0 173 32.4
Glyma.08G272000 Glycine max HOM05D002068 ORTHO05D002029 1.0e-07 62.0 171 31.6
Glyma.08G272200 Glycine max HOM05D002068 ORTHO05D002029 1.0e-07 62.0 171 31.6
Hma1.2p1_0303F.1_g119120 Hydrangea macrophylla HOM05D002068 ORTHO05D002029 1.0e-07 62.0 399 25.6
Actinidia14810 Actinidia chinensis HOM05D002068 ORTHO05D002029 1.4e-07 61.6 172 29.7
MSTRG.12156 Avicennia marina HOM05D002068 ORTHO05D002029 1.4e-07 61.6 171 30.4
CsaV3_3G049180 Cucumis sativus L. HOM05D002068 ORTHO05D002029 1.4e-07 61.6 383 27.4
TAR374G0127 Trochodendron aralioides HOM05D002068 ORTHO05D002029 1.4e-07 61.6 145 33.1
AL4G31260 Arabidopsis lyrata HOM05D002068 ORTHO05D002029 1.8e-07 61.2 381 35.4
Carub.0008s0114 Capsella rubella HOM05D002068 ORTHO05D002029 1.8e-07 61.2 146 34.9
Cpa.g.sc71.70 Carica papaya HOM05D002068 ORTHO05D002029 1.8e-07 61.2 392 26.3
Dinv28957 Davidia involucrata HOM05D002068 ORTHO05D002029 2.3e-07 60.8 356 26.4
Lsat_1_v5_gn_6_65520 Lactuca sativa HOM05D002068 ORTHO05D002029 2.3e-07 60.8 150 34.7
Thhalv10016759m.g Eutrema salsugineum HOM05D002068 ORTHO05D002029 3.1e-07 60.5 353 32.6
Sp2g11590 Schrenkiella parvula HOM05D002068 ORTHO05D002029 3.1e-07 60.5 138 35.5
SpUn0036_0020 Schrenkiella parvula HOM05D002068 ORTHO05D002029 3.1e-07 60.5 138 35.5
PSO151G0076 Papaver somniferum HOM05D002068 ORTHO05D002029 4.0e-07 60.1 172 32.0
arahy.Tifrunner.gnm1.ann1.Q5RTUN Arachis hypogaea HOM05D002068 ORTHO05D002029 5.2e-07 59.7 396 26.8
arahy.Tifrunner.gnm1.ann1.VYGU2E Arachis hypogaea HOM05D002068 ORTHO05D002029 5.2e-07 59.7 396 26.8
BcaC06g34348 Brassica carinata HOM05D002068 ORTHO05D002029 5.2e-07 59.7 153 35.9
C07p30090 Brassica napus HOM05D002068 ORTHO05D002029 5.2e-07 59.7 153 35.9
BolC7t43548H Brassica oleracea HOM05D002068 ORTHO05D002029 5.2e-07 59.7 153 35.9
CAN.G1381.5 Capsicum annuum HOM05D002068 ORTHO05D002029 5.2e-07 59.7 166 32.5
Gohir.A03G001100 Gossypium hirsutum HOM05D002068 ORTHO05D002029 6.8e-07 59.3 106 38.7
THA.LOC104814442 Tarenaya hassleriana HOM05D002068 ORTHO05D002029 6.8e-07 59.3 409 25.9
AT5G46780 Arabidopsis thaliana HOM05D002068 ORTHO05D002029 8.9e-07 58.9 143 35.0
DCAR_005628 Daucus carota HOM05D002068 ORTHO05D002029 8.9e-07 58.9 170 31.2
Eucgr.D02200 Eucalyptus grandis HOM05D002068 ORTHO05D002029 8.9e-07 58.9 395 27.1
C03p22700 Brassica napus HOM05D002068 ORTHO05D002029 1.2e-06 58.5 153 28.8
BolC3t14669H Brassica oleracea HOM05D002068 ORTHO05D002029 1.2e-06 58.5 169 29.6
MELO3C003409.2 Cucumis melo HOM05D002068 ORTHO05D002029 1.2e-06 58.5 384 28.4
ECA233G6139 Erigeron canadensis HOM05D002068 ORTHO05D002029 1.2e-06 58.5 176 30.1
Peaxi162Scf00615g00064 Petunia axillaris HOM05D002068 ORTHO05D002029 1.2e-06 58.5 176 28.4
Sc01g0007430 Simmondsia chinensis HOM05D002068 ORTHO05D002029 1.2e-06 58.5 189 29.1
Lj1g0010802 Lotus japonicus HOM05D002068 ORTHO05D002029 1.5e-06 58.2 154 31.2
PGR031G2163 Punica granatum HOM05D002068 ORTHO05D002029 1.5e-06 58.2 173 27.2
BcaC06g31446 Brassica carinata HOM05D002068 ORTHO05D002029 2.0e-06 57.8 148 33.8
Actinidia03376 Actinidia chinensis HOM05D002068 ORTHO05D002029 2.6e-06 57.4 381 24.1
CARHR174720 Cardamine hirsuta HOM05D002068 ORTHO05D002029 2.6e-06 57.4 141 35.5
Sp4g17450 Schrenkiella parvula HOM05D002068 ORTHO05D002029 3.4e-06 57.0 363 29.8
ATR1133G059 Amborella trichopoda HOM05D002068 ORTHO05D002029 4.4e-06 56.6 133 28.6
Manes.01G233900 Manihot esculenta HOM05D002068 ORTHO05D002029 4.4e-06 56.6 96 38.5
AL8G11560 Arabidopsis lyrata HOM05D002068 ORTHO05D002029 5.8e-06 56.2 137 35.0
BraA02t08048Z Brassica rapa HOM05D002068 ORTHO05D002029 5.8e-06 56.2 152 34.2
Duzib205G1382 Durio zibethinus HOM05D002068 ORTHO05D002029 7.5e-06 55.8 102 39.2
MBI04_g23601_MAGBIO Magnolia biondii HOM05D002068 ORTHO05D002029 7.5e-06 55.8 135 30.4
PGSC0003DMG400042183 Solanum tuberosum HOM05D002068 ORTHO05D002029 7.5e-06 55.8 85 41.2


User provided reference genes

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