Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_22534_v3 Cicer arietinum L. HOM05D002102 ORTHO05D008242 1.6e-138 496.1 261 100.0
TPR.G19825 Trifolium pratense HOM05D002102 ORTHO05D008242 4.9e-95 351.7 268 76.9
Medtr8g070680 Medicago truncatula HOM05D002102 ORTHO05D008242 3.2e-94 349.0 265 74.7
Psat0s2609g0120 Pisum sativum HOM05D002102 ORTHO05D008242 1.5e-88 330.1 272 69.9
Glyma.08G267700 Glycine max HOM05D002102 ORTHO05D008242 1.3e-87 327.0 265 70.2
Lj4g0016411 Lotus japonicus HOM05D002102 ORTHO05D008242 4.2e-86 322.0 270 67.4
Glyma.16G094300 Glycine max HOM05D002102 ORTHO05D008242 3.5e-85 318.9 235 74.0
arahy.Tifrunner.gnm1.ann1.N8G6CJ Arachis hypogaea HOM05D002102 ORTHO05D008242 3.9e-84 315.5 268 68.7
arahy.Tifrunner.gnm1.ann1.1TYS6L Arachis hypogaea HOM05D002102 ORTHO05D008242 1.9e-83 313.2 267 68.9
Phvul.003G275400 Phaseolus vulgaris HOM05D002102 ORTHO05D008242 1.5e-80 303.5 251 67.3
Lalb_Chr21g0315091 Lupinus albus HOM05D002102 ORTHO05D008242 8.8e-76 287.7 276 60.9
GSVIVG01037088001 Vitis vinifera HOM05D002102 ORTHO05D008242 2.8e-74 282.7 204 72.1
QL11p010809 Quercus lobata HOM05D002102 ORTHO05D008242 3.7e-74 282.3 199 74.4
Ciclev10016300m.g Citrus clementina HOM05D002102 ORTHO05D008242 9.1e-73 277.7 243 65.0
Peaxi162Scf00313g00048 Petunia axillaris HOM05D002102 ORTHO05D008242 9.1e-73 277.7 257 63.8
HanXRQChr09g0257721 Helianthus annuus HOM05D002102 ORTHO05D008242 1.2e-72 277.3 176 77.8
TAR627G1208 Trochodendron aralioides HOM05D002102 ORTHO05D008242 2.0e-72 276.6 215 67.9
PGSC0003DMG402011260 Solanum tuberosum HOM05D002102 ORTHO05D008242 3.4e-72 275.8 271 60.9
CiPaw.09G140600 Carya illinoinensis HOM05D002102 ORTHO05D008242 5.9e-72 275.0 184 77.2
TWI63G1577 Tripterygium wilfordii HOM05D002102 ORTHO05D008242 7.7e-72 274.6 268 57.8
PGR004G2223 Punica granatum HOM05D002102 ORTHO05D008242 1.7e-71 273.5 220 66.4
Lsat_1_v5_gn_8_106940 Lactuca sativa HOM05D002102 ORTHO05D008242 3.8e-71 272.3 182 74.7
Cpa.g.sc30.78 Carica papaya HOM05D002102 ORTHO05D008242 5.0e-71 271.9 207 70.0
Oeu023527.1 Olea europaea HOM05D002102 ORTHO05D008242 5.0e-71 271.9 219 69.9
CsaV3_6G053190 Cucumis sativus L. HOM05D002102 ORTHO05D008242 6.5e-71 271.6 203 70.0
MELO3C006996.2 Cucumis melo HOM05D002102 ORTHO05D008242 1.1e-70 270.8 203 70.0
Nn7g38425 Nelumbo nucifera HOM05D002102 ORTHO05D008242 1.1e-70 270.8 206 68.0
EL10Ac4g09967 Beta vulgaris HOM05D002102 ORTHO05D008242 1.4e-70 270.4 245 61.2
Solyc10g005180.3 Solanum lycopersicum HOM05D002102 ORTHO05D008242 1.9e-70 270.0 263 60.8
CSS0016773 Camellia sinensis var. sinensis HOM05D002102 ORTHO05D008242 2.5e-70 269.6 263 58.6
Aqoxy1G01357 Aquilegia oxysepala HOM05D002102 ORTHO05D008242 4.2e-70 268.9 228 65.4
Manes.03G073000 Manihot esculenta HOM05D002102 ORTHO05D008242 4.2e-70 268.9 274 56.9
CANSAT35G0655 Cannabis sativa HOM05D002102 ORTHO05D008242 7.2e-70 268.1 253 62.1
Eucgr.E03887 Eucalyptus grandis HOM05D002102 ORTHO05D008242 9.4e-70 267.7 207 68.1
Actinidia34700 Actinidia chinensis HOM05D002102 ORTHO05D008242 2.7e-69 266.2 204 67.6
Nitab4.5_0002246g0020 Nicotiana tabacum HOM05D002102 ORTHO05D008242 4.7e-69 265.4 224 65.6
Rhsim02G0171500 Rhododendron simsii HOM05D002102 ORTHO05D008242 4.7e-69 265.4 265 60.0
Sed0010823 Sechium edule HOM05D002102 ORTHO05D008242 7.9e-69 264.6 215 68.4
vmacro11020 Vaccinium macrocarpon HOM05D002102 ORTHO05D008242 7.9e-69 264.6 250 60.0
Cc09_g04620 Coffea canephora HOM05D002102 ORTHO05D008242 1.8e-68 263.5 203 69.0
Gohir.A03G218300 Gossypium hirsutum HOM05D002102 ORTHO05D008242 3.0e-68 262.7 194 72.2
Sabra01G0052500 Salix brachista HOM05D002102 ORTHO05D008242 5.1e-68 261.9 255 58.8
Ah.06g191610 Amaranthus hybridus HOM05D002851 ORTHO05D003084 1.1e-67 260.8 178 77.0
Gohir.D02G240400 Gossypium hirsutum HOM05D002102 ORTHO05D008242 1.1e-67 260.8 194 71.6
Gorai.005G268700 Gossypium raimondii HOM05D002102 ORTHO05D008242 1.1e-67 260.8 194 71.6
FvH4_3g13341 Fragaria vesca HOM05D002102 ORTHO05D008242 1.5e-67 260.4 181 75.7
PSO675G4370 Papaver somniferum HOM05D002102 ORTHO05D008242 9.7e-67 257.7 206 64.6
Potri.001G074200 Populus trichocarpa HOM05D002102 ORTHO05D008242 9.7e-67 257.7 249 58.6
PSO170G6365 Papaver somniferum HOM05D002102 ORTHO05D008242 1.3e-66 257.3 206 64.6
RcHm_v2.0_Chr5g0021821 Rosa chinensis HOM05D002102 ORTHO05D008242 2.8e-66 256.1 261 58.6
Thecc.02G001200 Theobroma cacao HOM05D002102 ORTHO05D008242 2.8e-66 256.1 264 59.1
AT5G44650 Arabidopsis thaliana HOM05D002102 ORTHO05D008242 3.5e-64 249.2 186 71.5
CARHR178230 Cardamine hirsuta HOM05D002102 ORTHO05D008242 3.5e-64 249.2 181 73.5
Haze_05188 Corylus avellana HOM05D002102 ORTHO05D008242 4.5e-64 248.8 231 61.5
Carub.0008s0361 Capsella rubella HOM05D002102 ORTHO05D008242 5.9e-64 248.4 184 71.7
Prupe.4G120800 Prunus persica HOM05D002102 ORTHO05D008242 5.9e-64 248.4 181 74.0
Thhalv10000983m.g Eutrema salsugineum HOM05D002102 ORTHO05D008242 1.0e-63 247.7 181 71.3
AL8G14900 Arabidopsis lyrata HOM05D002102 ORTHO05D008242 1.7e-63 246.9 181 72.4
Sp2g09460 Schrenkiella parvula HOM05D002102 ORTHO05D008242 2.9e-63 246.1 182 71.4
Os01g0798500 Oryza sativa ssp. japonica HOM05D002102 ORTHO05D008242 3.8e-63 245.7 186 71.0
BcaC06g31600 Brassica carinata HOM05D002102 ORTHO05D008242 1.1e-62 244.2 185 70.3
ECA232G0416 Erigeron canadensis HOM05D002102 ORTHO05D008242 1.1e-62 244.2 166 71.7
BcaC06g34527 Brassica carinata HOM05D002102 ORTHO05D008242 1.5e-62 243.8 185 70.3
C07p27540 Brassica napus HOM05D002102 ORTHO05D008242 1.5e-62 243.8 185 70.3
BolC7t43285H Brassica oleracea HOM05D002102 ORTHO05D008242 1.5e-62 243.8 185 70.3
A06p47030 Brassica napus HOM05D002102 ORTHO05D008242 1.9e-62 243.4 185 69.7
FAN16G2960 Fragaria x ananassa HOM05D002102 ORTHO05D008242 1.9e-62 243.4 171 73.7
BcaB07g30508 Brassica carinata HOM05D002102 ORTHO05D008242 2.5e-62 243.0 182 71.4
FAN11G2372 Fragaria x ananassa HOM05D002102 ORTHO05D008242 3.2e-62 242.7 170 74.1
MD10G1224400 Malus domestica HOM05D002102 ORTHO05D008242 3.2e-62 242.7 275 56.0
FAN25G3128 Fragaria x ananassa HOM05D002102 ORTHO05D008242 7.2e-62 241.5 170 73.5
Zm00001eb150810 Zea mays HOM05D002102 ORTHO05D008242 4.7e-61 238.8 183 69.4
PGSC0003DMG401011260 Solanum tuberosum HOM05D002102 ORTHO05D008242 6.1e-61 238.4 155 78.7
ClCG01G025950 Citrullus lanatus HOM05D002102 ORTHO05D008242 1.0e-60 237.7 191 66.5
BraA06t27576Z Brassica rapa HOM05D002102 ORTHO05D008242 5.7e-59 231.9 205 62.9
Aa31LG9G8520 Aethionema arabicum HOM05D002102 ORTHO05D008242 3.7e-58 229.2 167 70.7
CDE11G0809 Ceratophyllum demersum HOM05D002102 ORTHO05D008242 1.8e-57 226.9 219 58.0
unitig_92.g28193 Utricularia gibba HOM05D002594 ORTHO05D003499 9.1e-57 224.6 192 63.5
Sc24g0002820 Simmondsia chinensis HOM05D002102 ORTHO05D008242 2.0e-56 223.4 151 74.2
Dinv17885 Davidia involucrata HOM05D002102 ORTHO05D008242 7.7e-56 221.5 146 74.0
Sopen10g001170 Solanum pennellii HOM05D002102 ORTHO05D008242 1.0e-55 221.1 234 56.8
Atru.chr10.236 Acer truncatum HOM05D002102 ORTHO05D008242 2.9e-55 219.5 148 73.6
COL.COLO4_25027 Corchorus olitorius HOM05D002102 ORTHO05D008242 5.5e-54 215.3 163 69.3
DCAR_001256 Daucus carota HOM05D002102 ORTHO05D008242 1.8e-52 210.3 146 74.7
Lj1A1152G38 Lonicera japonica HOM05D002102 ORTHO05D008242 3.0e-52 209.5 147 72.8
Nitab4.5_0001299g0100 Nicotiana tabacum HOM05D002102 ORTHO05D008242 8.8e-52 208.0 234 55.1
Migut.M02036 Erythranthe guttata HOM05D002102 ORTHO05D008242 3.4e-51 206.1 220 56.8
PSO541G0118 Papaver somniferum HOM05D002102 ORTHO05D008242 4.8e-50 202.2 249 49.8
MBI02_g17886_MAGBIO Magnolia biondii HOM05D002102 ORTHO05D008242 7.0e-49 198.4 206 57.3
HPP92_001585 Vanilla planifolia HOM05D002102 ORTHO05D008242 7.0e-49 198.4 154 66.2
FAN21G2948 Fragaria x ananassa HOM05D002102 ORTHO05D008242 1.3e-47 194.1 169 62.7
Mapoly0033s0150 Marchantia polymorpha HOM05D002102 ORTHO05D008242 1.1e-46 191.0 204 55.4
Pp3c15_7910 Physcomitrium patens HOM05D002102 ORTHO05D008242 6.1e-45 185.3 223 51.6
AUR62040994 Chenopodium quinoa HOM05D002102 ORTHO05D008242 1.0e-44 184.5 121 77.7
AUR62042810 Chenopodium quinoa HOM05D002102 ORTHO05D008242 8.8e-44 181.4 122 75.4
SGA_v2.0_scaffold423G51451 Striga asiatica HOM05D002102 ORTHO05D008242 4.1e-41 172.6 196 53.6
ATR0073G005 Amborella trichopoda HOM05D002102 ORTHO05D008242 3.5e-40 169.5 206 51.5
Duzib132G0691 Durio zibethinus HOM05D002102 ORTHO05D008242 2.9e-39 166.4 233 49.4
AagrBONN_evm.TU.Sc2ySwM_368.1584 Anthoceros agrestis HOM05D002102 ORTHO05D008242 7.5e-35 151.8 166 52.4
HPP92_001768 Vanilla planifolia HOM05D001389 ORTHO05D002892 1.0e-31 141.4 126 57.9
MD05G1242700 Malus domestica HOM05D002102 ORTHO05D004119 2.3e-31 140.2 103 70.9
Oeu011782.1 Olea europaea HOM05D002102 ORTHO05D008242 5.6e-30 135.6 129 58.9
C02p45240 Brassica napus HOM05D002102 ORTHO05D008242 8.0e-29 131.7 145 53.8
RcHm_v2.0_Chr5g0021891 Rosa chinensis HOM05D002102 ORTHO05D008242 1.5e-27 127.5 88 70.5
BolC2t10554H Brassica oleracea HOM05D002102 ORTHO05D008242 2.2e-26 123.6 145 53.1
Actinidia31357 Actinidia chinensis HOM05D002102 ORTHO05D008242 2.9e-26 123.2 81 77.8
ATR0109G022 Amborella trichopoda HOM05D002102 ORTHO05D008242 1.2e-24 117.9 84 71.4
SEGI_24162 Sequoiadendron giganteum HOM05D002102 ORTHO05D008242 4.6e-24 115.9 120 52.5
RcHm_v2.0_Chr5g0021971 Rosa chinensis HOM05D002102 ORTHO05D008242 3.9e-23 112.8 156 48.1
Hund01844 Selenicereus undatus HOM05D002102 ORTHO05D008242 2.5e-22 110.2 65 84.6
Eucgr.L03440 Eucalyptus grandis HOM05D002102 ORTHO05D008242 9.5e-22 108.2 96 61.5
Cre06.g280650 Chlamydomonas reinhardtii HOM05D002102 ORTHO05D008242 3.6e-21 106.3 189 39.7
A02p28510 Brassica napus HOM05D002102 ORTHO05D008242 4.7e-21 105.9 126 50.0
CBR_g21832 Chara braunii HOM05D002102 ORTHO05D008242 4.7e-21 105.9 184 41.3
Actinidia31356 Actinidia chinensis HOM05D002102 ORTHO05D008242 3.4e-19 99.8 85 63.5
BcaC03g16684 Brassica carinata HOM05D002102 ORTHO05D008242 1.6e-16 90.9 71 69.0
RcHm_v2.0_Chr5g0021961 Rosa chinensis HOM05D002102 ORTHO05D008242 2.7e-16 90.1 65 69.2
MD05G1242600 Malus domestica HOM05D002102 ORTHO05D008242 5.1e-15 85.9 64 73.4
BraA02t07887Z Brassica rapa HOM05D002102 ORTHO05D008242 7.3e-14 82.0 104 46.2
RcHm_v2.0_Chr5g0021881 Rosa chinensis HOM05D002102 ORTHO05D008242 5.8e-11 72.4 85 47.1
RcHm_v2.0_Chr5g0021951 Rosa chinensis HOM05D002102 ORTHO05D008242 7.6e-11 72.0 54 64.8
Nitab4.5_0001815g0140 Nicotiana tabacum HOM05D002102 ORTHO05D004119 1.9e-09 67.4 55 58.2
Nitab4.5_0007687g0040 Nicotiana tabacum HOM05D002102 ORTHO05D008242 4.1e-09 66.2 43 74.4
AUR62041001 Chenopodium quinoa HOM05D002468 ORTHO05D009172 2.5e-06 57.0 37 73.0


User provided reference genes

Program Settings