Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_22364_v3 Cicer arietinum L. HOM05D002502 ORTHO05D013571 1.1e-66 256.5 133 100.0
Ca_25736_v3 Cicer arietinum L. HOM05D002502 ORTHO05D013571 2.2e-35 152.5 160 58.1
Ca_08854_v3 Cicer arietinum L. HOM05D002502 ORTHO05D000001 3.8e-35 151.8 134 65.7
Ca_03472_v3 Cicer arietinum L. HOM05D002502 ORTHO05D013571 3.2e-34 148.7 193 50.8
Ca_03002_v3 Cicer arietinum L. HOM05D002502 ORTHO05D013571 5.5e-34 147.9 159 57.2
Ca_26148_v3 Cicer arietinum L. HOM05D002502 ORTHO05D013571 8.8e-32 140.6 193 46.6
Ca_23029_v3 Cicer arietinum L. HOM05D002502 ORTHO05D013571 9.7e-31 137.1 194 48.5
Ca_23031_v3 Cicer arietinum L. HOM05D002502 ORTHO05D013571 9.7e-31 137.1 194 48.5
Ca_26248_v3 Cicer arietinum L. HOM05D002502 ORTHO05D013571 3.1e-29 132.1 185 47.0
Ca_11778_v3 Cicer arietinum L. HOM05D002502 ORTHO05D000001 5.0e-27 124.8 131 56.5
Ca_17168_v3 Cicer arietinum L. HOM05D002502 ORTHO05D013571 8.5e-27 124.0 138 55.8
Ca_27198_v3 Cicer arietinum L. HOM05D002502 ORTHO05D013571 1.4e-24 116.7 188 43.1
Ca_27381_v3 Cicer arietinum L. HOM05D002502 ORTHO05D013571 1.4e-24 116.7 152 52.0
Ca_26778_v3 Cicer arietinum L. HOM05D002502 ORTHO05D013571 4.0e-24 115.2 156 49.4
Ca_17040_v3 Cicer arietinum L. HOM05D002502 ORTHO05D013571 7.5e-23 110.9 89 69.7
Ca_19243_v3 Cicer arietinum L. HOM05D001788 ORTHO05D003523 2.2e-22 109.4 90 67.8
Ca_12965_v3 Cicer arietinum L. HOM05D006526 ORTHO05D008496 1.8e-21 106.3 89 66.3
Ca_23665_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 1.2e-20 103.6 161 44.7
Ca_02573_v3 Cicer arietinum L. HOM05D002502 ORTHO05D000001 7.7e-20 100.9 207 37.7
Ca_19739_v3 Cicer arietinum L. HOM05D002502 ORTHO05D000001 2.3e-16 89.4 175 38.9
Ca_27060_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 2.6e-15 85.9 73 67.1
Ca_21034_v3 Cicer arietinum L. HOM05D002031 ORTHO05D003557 1.8e-13 79.7 141 42.6
Ca_03099_v3 Cicer arietinum L. HOM05D002502 ORTHO05D018988 1.2e-12 77.0 186 33.9
Ca_14589_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 1.2e-12 77.0 47 80.9
Ca_06069_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 1.5e-10 70.1 127 40.2
Ca_04000_v3 Cicer arietinum L. HOM05D002502 ORTHO05D003592 1.9e-10 69.7 40 87.5
Ca_27854_v3 Cicer arietinum L. HOM05D002502 ORTHO05D013571 1.9e-10 69.7 88 50.0
Ca_03148_v3 Cicer arietinum L. HOM05D002502 ORTHO05D013571 4.3e-10 68.6 91 48.4
Psat5g297560 Pisum sativum HOM05D002502 ORTHO05D003592 4.3e-10 68.6 40 85.0
Psat5g237960 Pisum sativum HOM05D002502 ORTHO05D003592 1.2e-09 67.0 40 82.5
CSS0041556 Camellia sinensis var. sinensis HOM05D002502 ORTHO05D003592 2.1e-09 66.2 40 80.0
Lj2g0010803 Lotus japonicus HOM05D002502 ORTHO05D003592 2.8e-09 65.9 40 80.0
TPR.G9217 Trifolium pratense HOM05D002502 ORTHO05D003592 2.8e-09 65.9 40 80.0
Phvul.011G059700 Phaseolus vulgaris HOM05D002502 ORTHO05D003592 3.6e-09 65.5 40 77.5
arahy.Tifrunner.gnm1.ann1.IM6CL8 Arachis hypogaea HOM05D002502 ORTHO05D003592 4.7e-09 65.1 40 80.0
arahy.Tifrunner.gnm1.ann1.P2GJLH Arachis hypogaea HOM05D002502 ORTHO05D003592 4.7e-09 65.1 40 80.0
arahy.Tifrunner.gnm1.ann1.UDT6NA Arachis hypogaea HOM05D002502 ORTHO05D003592 4.7e-09 65.1 40 80.0
arahy.Tifrunner.gnm1.ann1.VUX1YY Arachis hypogaea HOM05D002502 ORTHO05D003592 4.7e-09 65.1 40 80.0
Medtr2g078050 Medicago truncatula HOM05D002502 ORTHO05D003592 4.7e-09 65.1 40 80.0
Medtr8g018150 Medicago truncatula HOM05D002502 ORTHO05D003592 4.7e-09 65.1 40 80.0
CiPaw.13G161500 Carya illinoinensis HOM05D002502 ORTHO05D003592 8.0e-09 64.3 40 77.5
Migut.L01444 Erythranthe guttata HOM05D002502 ORTHO05D003592 8.0e-09 64.3 40 80.0
Manes.14G002300 Manihot esculenta HOM05D002502 ORTHO05D003592 8.0e-09 64.3 40 80.0
Potri.009G054000 Populus trichocarpa HOM05D002502 ORTHO05D003592 8.0e-09 64.3 40 77.5
CiPaw.06G008400 Carya illinoinensis HOM05D002502 ORTHO05D003592 1.0e-08 63.9 40 77.5
Dinv30999 Davidia involucrata HOM05D002502 ORTHO05D003592 1.0e-08 63.9 40 77.5
Dinv31104 Davidia involucrata HOM05D002502 ORTHO05D003592 1.0e-08 63.9 40 77.5
QL10p058875 Quercus lobata HOM05D002502 ORTHO05D003592 1.0e-08 63.9 40 77.5
FvH4_3g28930 Fragaria vesca HOM05D002502 ORTHO05D003592 1.4e-08 63.5 40 77.5
FAN11G1940 Fragaria x ananassa HOM05D002502 ORTHO05D003592 1.4e-08 63.5 40 77.5
FAN16G0533 Fragaria x ananassa HOM05D002502 ORTHO05D003592 1.4e-08 63.5 40 77.5
Gohir.A02G105700 Gossypium hirsutum HOM05D002502 ORTHO05D003592 1.8e-08 63.2 40 77.5
Gorai.003G086000 Gossypium raimondii HOM05D002502 ORTHO05D003592 1.8e-08 63.2 40 77.5
Lalb_Chr19g0138101 Lupinus albus HOM05D002502 ORTHO05D003592 1.8e-08 63.2 40 80.0
Prupe.1G572400 Prunus persica HOM05D002502 ORTHO05D003592 1.8e-08 63.2 40 77.5
PGR119G0499 Punica granatum HOM05D002502 ORTHO05D003592 1.8e-08 63.2 40 75.0
TAR365G0773 Trochodendron aralioides HOM05D002502 ORTHO05D003592 1.8e-08 63.2 40 77.5
TAR376G0056 Trochodendron aralioides HOM05D002502 ORTHO05D003592 1.8e-08 63.2 40 77.5
VMungo1127G1321 Vigna mungo HOM05D002502 ORTHO05D003592 1.8e-08 63.2 40 75.0
Cc11_g14270 Coffea canephora HOM05D002502 ORTHO05D003592 2.3e-08 62.8 40 75.0
CsaV3_2G025380 Cucumis sativus L. HOM05D002502 ORTHO05D003592 2.3e-08 62.8 40 75.0
MD16G1277600 Malus domestica HOM05D002502 ORTHO05D003592 2.3e-08 62.8 40 77.5
Potri.001G258900 Populus trichocarpa HOM05D002502 ORTHO05D003592 2.3e-08 62.8 40 75.0
Aqoxy1G00533 Aquilegia oxysepala HOM05D002502 ORTHO05D003592 3.1e-08 62.4 40 72.5
CANSAT01G0379 Cannabis sativa HOM05D002502 ORTHO05D003592 4.0e-08 62.0 38 78.9
CANSAT78G2062 Cannabis sativa HOM05D002502 ORTHO05D003592 4.0e-08 62.0 38 78.9
ClCG08G017240 Citrullus lanatus HOM05D002502 ORTHO05D003592 4.0e-08 62.0 40 72.5
Eucgr.F03998 Eucalyptus grandis HOM05D002502 ORTHO05D003592 4.0e-08 62.0 40 75.0
Lalb_Chr03g0026331 Lupinus albus HOM05D002502 ORTHO05D003592 4.0e-08 62.0 40 77.5
Thecc.05G189100 Theobroma cacao HOM05D002502 ORTHO05D003592 4.0e-08 62.0 38 78.9
Actinidia08181 Actinidia chinensis HOM05D002502 ORTHO05D003592 5.2e-08 61.6 40 75.0
Haze_23131 Corylus avellana HOM05D002502 ORTHO05D003592 5.2e-08 61.6 40 75.0
FAN21G3969 Fragaria x ananassa HOM05D002502 ORTHO05D003592 5.2e-08 61.6 38 78.9
Manes.06G164900 Manihot esculenta HOM05D002502 ORTHO05D003592 5.2e-08 61.6 40 75.0
QL06p021110 Quercus lobata HOM05D002502 ORTHO05D003592 5.2e-08 61.6 40 75.0
MELO3C010735.2 Cucumis melo HOM05D002502 ORTHO05D003592 6.8e-08 61.2 40 72.5
Glyma.11G133600 Glycine max HOM05D002502 ORTHO05D003592 6.8e-08 61.2 40 75.0
Glyma.12G057800 Glycine max HOM05D002502 ORTHO05D003592 6.8e-08 61.2 40 75.0
QL02p019362 Quercus lobata HOM05D002502 ORTHO05D003592 6.8e-08 61.2 40 72.5
Rhsim04G0188800 Rhododendron simsii HOM05D002502 ORTHO05D003592 6.8e-08 61.2 40 75.0
Sed0022629 Sechium edule HOM05D002502 ORTHO05D003592 6.8e-08 61.2 40 72.5
Solyc07g053730.4 Solanum lycopersicum HOM05D002502 ORTHO05D003592 6.8e-08 61.2 40 75.0
Sopen07g027710 Solanum pennellii HOM05D002502 ORTHO05D003592 6.8e-08 61.2 40 75.0
PGSC0003DMG400026818 Solanum tuberosum HOM05D002502 ORTHO05D003592 6.8e-08 61.2 40 75.0
Cpa.g.c38405.1 Carica papaya HOM05D002502 ORTHO05D003592 8.9e-08 60.8 40 72.5
Ciclev10006517m.g Citrus clementina HOM05D002502 ORTHO05D003592 8.9e-08 60.8 38 76.3
Duzib168G1518 Durio zibethinus HOM05D002502 ORTHO05D003592 8.9e-08 60.8 38 76.3
Gohir.A12G115100 Gossypium hirsutum HOM05D002502 ORTHO05D003592 8.9e-08 60.8 40 75.0
Gohir.D03G078100 Gossypium hirsutum HOM05D002502 ORTHO05D003592 8.9e-08 60.8 40 75.0
RcHm_v2.0_Chr5g0051831 Rosa chinensis HOM05D002502 ORTHO05D003592 8.9e-08 60.8 40 72.5
SGA_v2.0_scaffold166G38342 Striga asiatica HOM05D002502 ORTHO05D003592 8.9e-08 60.8 40 70.0
Cfa010283 Carpinus fangiana HOM05D002502 ORTHO05D003592 1.2e-07 60.5 38 76.3
Haze_00984 Corylus avellana HOM05D002502 ORTHO05D003592 1.2e-07 60.5 38 76.3
Prupe.5G045700 Prunus persica HOM05D002502 ORTHO05D003592 1.2e-07 60.5 40 72.5
Aqoxy3G02133 Aquilegia oxysepala HOM05D002502 ORTHO05D003592 1.5e-07 60.1 40 72.5
Duzib170G0594 Durio zibethinus HOM05D002502 ORTHO05D003592 1.5e-07 60.1 38 76.3
MD11G1222700 Malus domestica HOM05D002502 ORTHO05D003592 1.5e-07 60.1 40 72.5
Prupe.4G247400 Prunus persica HOM05D002502 ORTHO05D003592 1.5e-07 60.1 40 72.5
Atru.chr11.1457 Acer truncatum HOM05D002502 ORTHO05D003592 2.0e-07 59.7 38 76.3
Atru.chr11.1490 Acer truncatum HOM05D002502 ORTHO05D003592 2.0e-07 59.7 38 76.3
Atru.chr3.2732 Acer truncatum HOM05D002502 ORTHO05D003592 2.0e-07 59.7 38 76.3
COL.COLO4_09008 Corchorus olitorius HOM05D002502 ORTHO05D003592 2.0e-07 59.7 40 70.0
RcHm_v2.0_Chr3g0491451 Rosa chinensis HOM05D002502 ORTHO05D003592 2.0e-07 59.7 40 72.5
SalBow2G0269 Salvia bowleyana HOM05D002502 ORTHO05D003592 2.0e-07 59.7 40 70.0
SalBow2G2645 Salvia bowleyana HOM05D002502 ORTHO05D003592 2.0e-07 59.7 40 70.0
Solyc01g081010.4 Solanum lycopersicum HOM05D002502 ORTHO05D003592 2.0e-07 59.7 40 72.5
Sopen01g032590 Solanum pennellii HOM05D002502 ORTHO05D003592 2.0e-07 59.7 40 72.5
FAN02G3956 Fragaria x ananassa HOM05D002502 ORTHO05D003592 2.6e-07 59.3 40 72.5
Oeu025445.1 Olea europaea HOM05D002502 ORTHO05D003592 2.6e-07 59.3 40 72.5
SHI29761 Sapria himalayana HOM05D002502 ORTHO05D003592 2.6e-07 59.3 38 76.3
Sc09g0008300 Simmondsia chinensis HOM05D002502 ORTHO05D003592 2.6e-07 59.3 40 72.5
TWI34G1958 Tripterygium wilfordii HOM05D002502 ORTHO05D003592 2.6e-07 59.3 38 73.7
unitig_749.g14333 Utricularia gibba HOM05D002502 ORTHO05D003592 2.6e-07 59.3 38 76.3
CAN.G700.14 Capsicum annuum HOM05D002502 ORTHO05D003592 3.4e-07 58.9 40 72.5
Lj8C580T7 Lonicera japonica HOM05D002502 ORTHO05D003592 3.4e-07 58.9 40 75.0
Lj4g0022659 Lotus japonicus HOM05D002502 ORTHO05D003592 3.4e-07 58.9 40 72.5
Nn1g08184 Nelumbo nucifera HOM05D002502 ORTHO05D003592 3.4e-07 58.9 38 73.7
Ah.16g104080 Amaranthus hybridus HOM05D002502 ORTHO05D003592 4.4e-07 58.5 40 70.0
MSTRG.7874 Avicennia marina HOM05D002502 ORTHO05D003592 4.4e-07 58.5 40 70.0
FAN05G4108 Fragaria x ananassa HOM05D002502 ORTHO05D003592 4.4e-07 58.5 40 70.0
MD06G1031200 Malus domestica HOM05D002502 ORTHO05D003592 4.4e-07 58.5 40 72.5
Nitab4.5_0009394g0010 Nicotiana tabacum HOM05D002502 ORTHO05D003592 4.4e-07 58.5 40 70.0
Prupe.5G046000 Prunus persica HOM05D002502 ORTHO05D003592 4.4e-07 58.5 40 70.0
Ah.09g232260 Amaranthus hybridus HOM05D002502 ORTHO05D003592 5.8e-07 58.2 40 70.0
EL10Ac7g16892 Beta vulgaris HOM05D002502 ORTHO05D003592 5.8e-07 58.2 40 72.5
Ciclev10004477m.g Citrus clementina HOM05D002502 ORTHO05D003592 7.5e-07 57.8 38 73.7
DCAR_007102 Daucus carota HOM05D002502 ORTHO05D003592 7.5e-07 57.8 40 72.5
PSO170G2022 Papaver somniferum HOM05D002502 ORTHO05D003592 7.5e-07 57.8 38 73.7
PSO761G0496 Papaver somniferum HOM05D002502 ORTHO05D003592 7.5e-07 57.8 38 73.7
CAN.G209.22 Capsicum annuum HOM05D002502 ORTHO05D003592 9.8e-07 57.4 40 70.0
Ca_00014_v3 Cicer arietinum L. HOM05D003079 ORTHO05D003461 9.8e-07 57.4 44 68.2
Dinv39632 Davidia involucrata HOM05D002502 ORTHO05D013571 9.8e-07 57.4 38 73.7
FvH4_6g37740 Fragaria vesca HOM05D002502 ORTHO05D003592 9.8e-07 57.4 38 73.7
PSO455G0171 Papaver somniferum HOM05D002502 ORTHO05D003592 9.8e-07 57.4 38 73.7
PSO478G3145 Papaver somniferum HOM05D002502 ORTHO05D003592 1.3e-06 57.0 38 71.1
Ca_11726_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 1.7e-06 56.6 173 30.1
Ca_22847_v3 Cicer arietinum L. HOM05D002502 ORTHO05D000001 1.7e-06 56.6 103 41.7
EL10Ac8g18494 Beta vulgaris HOM05D002502 ORTHO05D003592 2.2e-06 56.2 40 70.0
Haze_01417 Corylus avellana HOM05D002502 ORTHO05D003592 2.2e-06 56.2 40 70.0
Lj4P468T8 Lonicera japonica HOM05D002502 ORTHO05D003592 2.2e-06 56.2 36 77.8
Nn5g27606 Nelumbo nucifera HOM05D002502 ORTHO05D003592 2.9e-06 55.8 38 71.1
Nitab4.5_0004196g0030 Nicotiana tabacum HOM05D002502 ORTHO05D003592 2.9e-06 55.8 40 67.5
AUR62039750 Chenopodium quinoa HOM05D002502 ORTHO05D003592 3.7e-06 55.5 40 67.5
AUR62039964 Chenopodium quinoa HOM05D002502 ORTHO05D003592 3.7e-06 55.5 40 67.5
Ca_14167_v3 Cicer arietinum L. HOM05D002502 ORTHO05D013571 3.7e-06 55.5 51 62.7
ECA246G4618 Erigeron canadensis HOM05D002502 ORTHO05D003592 4.9e-06 55.1 38 73.7
Peaxi162Scf00592g00003 Petunia axillaris HOM05D002502 ORTHO05D003592 6.4e-06 54.7 40 67.5
HPP92_004879 Vanilla planifolia HOM05D002502 ORTHO05D003592 6.4e-06 54.7 38 65.8
Zm00001eb373990 Zea mays HOM05D002502 ORTHO05D003592 6.4e-06 54.7 37 73.0
HanXRQChr11g0323631 Helianthus annuus HOM05D002502 ORTHO05D003592 8.3e-06 54.3 38 71.1
HanXRQChr15g0476651 Helianthus annuus HOM05D002502 ORTHO05D003592 8.3e-06 54.3 38 71.1


User provided reference genes

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