Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_22016_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 0.0e+00 3676.3 1849 100.0
Medtr4g099300 Medicago truncatula HOM05D003893 ORTHO05D005167 0.0e+00 3083.9 1884 84.2
Lj4g0018101 Lotus japonicus HOM05D003893 ORTHO05D005167 0.0e+00 2807.3 1883 76.7
Glyma.17G148200 Glycine max HOM05D003893 ORTHO05D005167 0.0e+00 2795.4 1892 76.7
Phvul.003G225400 Phaseolus vulgaris HOM05D003893 ORTHO05D005167 0.0e+00 2686.0 1896 73.5
Lalb_Chr09g0329781 Lupinus albus HOM05D003893 ORTHO05D005167 0.0e+00 2608.2 1892 72.5
TPR.G25755 Trifolium pratense HOM05D003893 ORTHO05D005167 0.0e+00 2454.9 1481 84.3
arahy.Tifrunner.gnm1.ann1.TA1JJE Arachis hypogaea HOM05D003893 ORTHO05D005167 0.0e+00 2442.9 1895 68.4
arahy.Tifrunner.gnm1.ann1.763U0W Arachis hypogaea HOM05D003893 ORTHO05D005167 0.0e+00 2441.0 1895 68.5
Psat4g076000 Pisum sativum HOM05D003893 ORTHO05D005167 0.0e+00 2393.2 1468 83.8
Atru.chr9.1207 Acer truncatum HOM05D003893 ORTHO05D005167 0.0e+00 1991.5 1898 57.2
Prupe.5G055400 Prunus persica HOM05D003893 ORTHO05D005167 0.0e+00 1981.1 1894 56.8
QL12p008764 Quercus lobata HOM05D003893 ORTHO05D005167 0.0e+00 1980.7 2098 53.1
Potri.001G150900 Populus trichocarpa HOM05D003893 ORTHO05D005167 0.0e+00 1976.8 1896 56.3
RcHm_v2.0_Chr7g0205631 Rosa chinensis HOM05D003893 ORTHO05D005167 0.0e+00 1964.1 1897 56.7
TAR375G0027 Trochodendron aralioides HOM05D003893 ORTHO05D005167 0.0e+00 1947.9 1900 55.3
Dinv25135 Davidia involucrata HOM05D003893 ORTHO05D005167 0.0e+00 1942.9 1916 55.7
Thecc.03G240200 Theobroma cacao HOM05D003893 ORTHO05D005167 0.0e+00 1935.2 1892 55.9
CANSAT21G1178 Cannabis sativa HOM05D003893 ORTHO05D005167 0.0e+00 1924.8 1888 55.5
Cfa012326 Carpinus fangiana HOM05D003893 ORTHO05D005167 0.0e+00 1920.2 1727 59.9
Manes.01G088800 Manihot esculenta HOM05D003893 ORTHO05D005167 0.0e+00 1917.5 1894 55.1
FvH4_5g20370 Fragaria vesca HOM05D003893 ORTHO05D005167 0.0e+00 1909.4 1892 55.8
Ciclev10024446m.g Citrus clementina HOM05D003893 ORTHO05D005167 0.0e+00 1882.5 1926 54.6
CSS0002187 Camellia sinensis var. sinensis HOM05D003893 ORTHO05D005167 0.0e+00 1854.3 1922 53.7
Ca_30504_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 0.0e+00 1840.5 915 100.0
Gorai.008G230900 Gossypium raimondii HOM05D003893 ORTHO05D005167 0.0e+00 1835.8 1918 54.3
PGR042G1290 Punica granatum HOM05D003893 ORTHO05D005167 0.0e+00 1828.1 1886 53.6
FAN18G3472 Fragaria x ananassa HOM05D003893 ORTHO05D005167 0.0e+00 1795.4 1901 53.3
FAN08G3381 Fragaria x ananassa HOM05D003893 ORTHO05D005167 0.0e+00 1793.5 1900 53.5
CsaV3_3G002270 Cucumis sativus L. HOM05D003893 ORTHO05D005167 0.0e+00 1790.8 1901 52.8
Sc07g0009060 Simmondsia chinensis HOM05D003893 ORTHO05D005167 0.0e+00 1779.6 1913 51.6
MELO3C013898.2 Cucumis melo HOM05D003893 ORTHO05D005167 0.0e+00 1774.6 1892 52.3
Rhsim11G0002100 Rhododendron simsii HOM05D003893 ORTHO05D005167 0.0e+00 1749.9 1792 53.8
THA.LOC104798352 Tarenaya hassleriana HOM05D003893 ORTHO05D005167 0.0e+00 1746.5 1892 51.9
Gohir.A12G212800 Gossypium hirsutum HOM05D003893 ORTHO05D005167 0.0e+00 1730.7 1883 52.7
PSO732G0344 Papaver somniferum HOM05D003893 ORTHO05D005167 0.0e+00 1729.5 1893 50.7
Solyc08g077850.2 Solanum lycopersicum HOM05D003893 ORTHO05D005167 0.0e+00 1718.0 1888 50.2
Sed0003705 Sechium edule HOM05D003893 ORTHO05D005167 0.0e+00 1715.7 1893 51.1
PSO675G1423 Papaver somniferum HOM05D003893 ORTHO05D005167 0.0e+00 1710.7 1896 50.7
CAN.G572.10 Capsicum annuum HOM05D003893 ORTHO05D005167 0.0e+00 1709.5 1887 50.7
CARHR224310 Cardamine hirsuta HOM05D003893 ORTHO05D005167 0.0e+00 1708.3 1900 50.7
DCAR_005586 Daucus carota HOM05D003893 ORTHO05D005167 0.0e+00 1705.3 1893 50.6
Aqoxy5G02623 Aquilegia oxysepala HOM05D003893 ORTHO05D005167 0.0e+00 1703.3 1888 50.6
AT4G17610 Arabidopsis thaliana HOM05D003893 ORTHO05D005167 0.0e+00 1700.3 1892 50.6
Carub.0007s2378 Capsella rubella HOM05D003893 ORTHO05D005167 0.0e+00 1699.5 1897 51.0
Sp7g16550 Schrenkiella parvula HOM05D003893 ORTHO05D005167 0.0e+00 1689.9 1896 50.5
AL7G36990 Arabidopsis lyrata HOM05D003893 ORTHO05D005167 0.0e+00 1682.2 1889 50.5
Thhalv10024195m.g Eutrema salsugineum HOM05D003893 ORTHO05D005167 0.0e+00 1680.2 1889 50.6
A01p09670 Brassica napus HOM05D003893 ORTHO05D005167 0.0e+00 1677.1 1887 49.9
BraA01t00910Z Brassica rapa HOM05D003893 ORTHO05D005167 0.0e+00 1673.7 1893 49.9
Aa31LG6G350 Aethionema arabicum HOM05D003893 ORTHO05D005167 0.0e+00 1665.2 1895 49.9
Migut.E01633 Erythranthe guttata HOM05D003893 ORTHO05D005167 0.0e+00 1664.4 1908 48.7
C01p11280 Brassica napus HOM05D003893 ORTHO05D005167 0.0e+00 1664.0 1891 49.6
MD04G1055600 Malus domestica HOM05D003893 ORTHO05D005167 0.0e+00 1664.0 1565 57.3
BcaC09g51627 Brassica carinata HOM05D003893 ORTHO05D005167 0.0e+00 1657.1 1890 49.6
Peaxi162Scf00301g00417 Petunia axillaris HOM05D003893 ORTHO05D005167 0.0e+00 1652.5 1948 48.4
BolC1t01093H Brassica oleracea HOM05D003893 ORTHO05D005167 0.0e+00 1650.2 1913 49.0
Duzib205G1731 Durio zibethinus HOM05D003893 ORTHO05D005167 0.0e+00 1638.6 1897 49.8
Sopen08g026360 Solanum pennellii HOM05D003893 ORTHO05D005167 0.0e+00 1634.4 1800 50.1
HanXRQChr16g0504541 Helianthus annuus HOM05D003893 ORTHO05D005167 0.0e+00 1632.8 1870 49.0
Gohir.D12G215300 Gossypium hirsutum HOM05D003893 ORTHO05D005167 0.0e+00 1630.5 1608 56.7
MSTRG.1953 Avicennia marina HOM05D003893 ORTHO05D005167 0.0e+00 1630.2 1886 48.0
COL.COLO4_07201 Corchorus olitorius HOM05D003893 ORTHO05D005167 0.0e+00 1627.5 1898 50.2
ECA233G0269 Erigeron canadensis HOM05D003893 ORTHO05D005167 0.0e+00 1618.6 1872 48.7
Lj8C277G4 Lonicera japonica HOM05D003893 ORTHO05D005167 0.0e+00 1607.8 1984 48.3
Sabra01G0120900 Salix brachista HOM05D003893 ORTHO05D005167 0.0e+00 1606.7 1709 52.1
Cc08_g11340 Coffea canephora HOM05D003893 ORTHO05D005167 0.0e+00 1605.5 1905 47.7
BcaNung00076 Brassica carinata HOM05D003893 ORTHO05D005167 0.0e+00 1582.0 1892 47.8
Eucgr.E00353 Eucalyptus grandis HOM05D003893 ORTHO05D005167 0.0e+00 1578.9 1910 47.9
EL10Ac5g12271 Beta vulgaris HOM05D003893 ORTHO05D005167 0.0e+00 1540.8 1892 46.9
Actinidia25908 Actinidia chinensis HOM05D003893 ORTHO05D005167 0.0e+00 1528.5 1591 53.6
Oeu054285.1 Olea europaea HOM05D003893 ORTHO05D005167 0.0e+00 1496.5 1638 50.2
AUR62018840 Chenopodium quinoa HOM05D003893 ORTHO05D005167 0.0e+00 1491.9 1811 47.3
Lsat_1_v5_gn_6_67000 Lactuca sativa HOM05D003893 ORTHO05D005167 0.0e+00 1460.3 1896 45.7
Zm00001eb000190 Zea mays HOM05D003893 ORTHO05D005167 0.0e+00 1385.5 1911 43.6
SGA_v2.0_scaffold20G09254 Striga asiatica HOM05D003893 ORTHO05D005167 0.0e+00 1318.9 1933 42.5
GSVIVG01003688001 Vitis vinifera HOM05D003893 ORTHO05D005167 0.0e+00 1266.1 1190 57.0
VMungo0251G3747 Vigna mungo HOM05D003893 ORTHO05D005167 0.0e+00 1219.5 1526 48.2
Hund14479 Selenicereus undatus HOM05D003893 ORTHO05D005167 0.0e+00 1193.7 1496 47.3
CiPaw.11G072600 Carya illinoinensis HOM05D003893 ORTHO05D005167 0.0e+00 1166.8 1051 59.2
Nitab4.5_0000500g0300 Nicotiana tabacum HOM05D003893 ORTHO05D005167 2.8e-309 1066.2 1450 43.6
ClCG10G002230 Citrullus lanatus HOM05D003893 ORTHO05D005167 3.9e-303 1045.8 1112 53.4
vmacro17755 Vaccinium macrocarpon HOM05D003893 ORTHO05D005167 5.8e-299 1031.9 1404 44.8
Mapoly0105s0045 Marchantia polymorpha HOM05D003893 ORTHO05D005167 6.7e-287 991.9 1966 34.0
AUR62007166 Chenopodium quinoa HOM05D003893 ORTHO05D005167 5.6e-286 988.8 1358 43.2
ATR0665G346 Amborella trichopoda HOM05D003893 ORTHO05D005167 1.2e-267 927.9 1010 51.0
Hma1.2p1_0840F.1_g226640 Hydrangea macrophylla HOM05D003893 ORTHO05D005167 1.3e-258 897.9 767 61.9
SalBow1G5499 Salvia bowleyana HOM05D003893 ORTHO05D005167 8.8e-255 885.2 1055 48.3
SalBow1G1311 Salvia bowleyana HOM05D003893 ORTHO05D005167 1.9e-241 840.9 796 56.5
unitig_21.g20369 Utricularia gibba HOM05D003893 ORTHO05D005167 7.0e-236 822.4 1528 36.7
BcaNung07386 Brassica carinata HOM05D003893 ORTHO05D005167 1.6e-187 661.8 745 52.3
TPR.G17142 Trifolium pratense HOM05D003893 ORTHO05D005167 2.3e-186 657.9 403 83.4
Psat4g075840 Pisum sativum HOM05D003893 ORTHO05D005167 3.3e-185 654.1 406 82.8
VMungo0251G0173 Vigna mungo HOM05D003893 ORTHO05D005167 4.6e-179 633.6 391 81.6
QL01p036487 Quercus lobata HOM05D003893 ORTHO05D005167 3.3e-177 627.5 515 64.9
Haze_08368 Corylus avellana HOM05D003893 ORTHO05D005167 1.4e-143 515.8 490 58.0
ClCG10G002220 Citrullus lanatus HOM05D003893 ORTHO05D005167 1.7e-136 492.3 603 46.9
Psat7g156960 Pisum sativum HOM05D003893 ORTHO05D005167 8.0e-131 473.4 644 48.3
Ca_30503_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 9.1e-127 459.9 287 84.3
vmacro17756 Vaccinium macrocarpon HOM05D003893 ORTHO05D005167 1.1e-124 453.0 431 58.5
Ah.07g199160 Amaranthus hybridus HOM05D003893 ORTHO05D005167 8.9e-114 416.8 658 40.1
Nitab4.5_0000500g0310 Nicotiana tabacum HOM05D003893 ORTHO05D005167 1.2e-107 396.4 405 54.6
SalBow1G6370 Salvia bowleyana HOM05D003893 ORTHO05D005167 3.4e-105 388.3 672 37.8
CDE12G0047 Ceratophyllum demersum HOM05D003893 ORTHO05D005167 9.8e-105 386.7 546 41.9
Haze_08369 Corylus avellana HOM05D003893 ORTHO05D005167 2.0e-97 362.5 312 62.8
SalBow1G0831 Salvia bowleyana HOM05D003893 ORTHO05D005167 7.1e-95 354.0 477 42.8
Haze_08365 Corylus avellana HOM05D003893 ORTHO05D005167 5.1e-93 347.8 394 49.5
Nitab4.5_0009451g0060 Nicotiana tabacum HOM05D003893 ORTHO05D005167 3.6e-91 341.7 335 55.8
Nitab4.5_0009451g0070 Nicotiana tabacum HOM05D003893 ORTHO05D005167 3.6e-91 341.7 589 37.0
Haze_08366 Corylus avellana HOM05D003893 ORTHO05D005167 3.9e-85 321.6 253 64.8
COL.COLO4_22133 Corchorus olitorius HOM05D003893 ORTHO05D005167 6.6e-85 320.9 488 41.0
ATR0665G055 Amborella trichopoda HOM05D003893 ORTHO05D005167 1.3e-77 296.6 487 38.2
SEGI_27963 Sequoiadendron giganteum HOM05D003893 ORTHO05D005167 7.9e-70 270.8 512 34.2
Haze_08367 Corylus avellana HOM05D003893 ORTHO05D005167 3.9e-69 268.5 386 44.3
VMungo0251G2570 Vigna mungo HOM05D003893 ORTHO05D005167 3.1e-66 258.8 137 89.8
Migut.E01263 Erythranthe guttata HOM05D003893 ORTHO05D005167 5.8e-65 254.6 374 39.8
Hund14480 Selenicereus undatus HOM05D003893 ORTHO05D005167 3.2e-63 248.8 310 48.1
arahy.Tifrunner.gnm1.ann1.NA56E9 Arachis hypogaea HOM05D003893 ORTHO05D005167 2.5e-60 239.2 142 82.4
Cre01.g027350 Chlamydomonas reinhardtii HOM05D003893 ORTHO05D005167 2.1e-59 236.1 927 25.6
Cpa.g.sc2698.1 Carica papaya HOM05D003893 ORTHO05D005167 1.1e-52 213.8 179 66.5
CiPaw.11G072500 Carya illinoinensis HOM05D003893 ORTHO05D005167 2.4e-50 206.1 297 42.4
CDE12G0573 Ceratophyllum demersum HOM05D003893 ORTHO05D005167 5.9e-49 201.4 180 60.6
Os03g0100500 Oryza sativa ssp. japonica HOM05D003893 ORTHO05D005167 7.6e-49 201.1 213 53.5
CBR_g21115 Chara braunii HOM05D003893 ORTHO05D005167 1.0e-48 200.7 389 35.5
CBR_g21120 Chara braunii HOM05D003893 ORTHO05D005167 8.4e-48 197.6 934 24.7
CDE12G0397 Ceratophyllum demersum HOM05D003893 ORTHO05D005167 1.2e-46 193.7 394 32.7
COL.COLO4_04209 Corchorus olitorius HOM05D003893 ORTHO05D005167 6.1e-46 191.4 182 55.5
arahy.Tifrunner.gnm1.ann1.L0U5DT Arachis hypogaea HOM05D003893 ORTHO05D005167 2.3e-45 189.5 167 61.1
PRCOL_00006953 Prasinoderma coloniale HOM05D003893 ORTHO05D005167 1.5e-44 186.8 802 23.6
Nitab4.5_0026472g0010 Nicotiana tabacum HOM05D003893 ORTHO05D005167 9.4e-39 167.5 465 31.0
SMO364G0317 Selaginella moellendorffii HOM05D003893 ORTHO05D005167 1.0e-37 164.1 177 50.3
CBR_g21119 Chara braunii HOM05D000019 ORTHO05D005167 3.9e-37 162.2 216 41.7
COL.COLO4_04210 Corchorus olitorius HOM05D003893 ORTHO05D005167 8.8e-37 161.0 154 57.8
arahy.Tifrunner.gnm1.ann1.FKEW18 Arachis hypogaea HOM05D003893 ORTHO05D005167 3.3e-36 159.1 136 62.5
MCO01G306 Micromonas commoda HOM05D003893 ORTHO05D005167 3.3e-36 159.1 678 25.1
arahy.Tifrunner.gnm1.ann1.LQQ75E Arachis hypogaea HOM05D003893 ORTHO05D005167 4.8e-35 155.2 85 90.6
arahy.Tifrunner.gnm1.ann1.MLK8WM Arachis hypogaea HOM05D003893 ORTHO05D005167 4.8e-35 155.2 85 91.8
Cpa.g.sc98.30 Carica papaya HOM05D003893 ORTHO05D005167 1.4e-29 137.1 149 50.3
arahy.Tifrunner.gnm1.ann1.9S00H1 Arachis hypogaea HOM05D003893 ORTHO05D005167 2.6e-28 132.9 74 87.8
Os10g0142900 Oryza sativa ssp. japonica HOM05D003893 ORTHO05D005167 2.2e-27 129.8 182 42.9
SEGI_19363 Sequoiadendron giganteum HOM05D003893 ORTHO05D005167 1.8e-26 126.7 130 53.1
Gohir.D02G139050 Gossypium hirsutum HOM05D003893 ORTHO05D005167 3.1e-26 125.9 82 74.4
Gohir.D11G202680 Gossypium hirsutum HOM05D003893 ORTHO05D005167 3.5e-25 122.5 82 73.2
Gorai.005G158100 Gossypium raimondii HOM05D003893 ORTHO05D005167 5.9e-25 121.7 82 72.0
VMungo0251G2254 Vigna mungo HOM05D003893 ORTHO05D005167 1.1e-23 117.5 108 61.1
Rhsim11G0002000 Rhododendron simsii HOM05D003893 ORTHO05D005167 6.1e-22 111.7 112 57.1
Gohir.A11G196650 Gossypium hirsutum HOM05D003893 ORTHO05D005167 8.8e-21 107.8 82 64.6
arahy.Tifrunner.gnm1.ann1.T8TVPL Arachis hypogaea HOM05D000826 ORTHO05D006448 2.0e-20 106.7 70 80.0
Ah.07g199170 Amaranthus hybridus HOM05D003893 ORTHO05D005167 4.4e-20 105.5 55 92.7
arahy.Tifrunner.gnm1.ann1.QNR9EZ Arachis hypogaea HOM05D000826 ORTHO05D006448 3.7e-19 102.4 70 78.6
COL.COLO4_00031 Corchorus olitorius HOM05D003893 ORTHO05D005167 1.4e-18 100.5 128 45.3
Cre15.g637350 Chlamydomonas reinhardtii HOM05D003893 ORTHO05D005167 2.4e-18 99.8 152 36.2
arahy.Tifrunner.gnm1.ann1.UB4SVV Arachis hypogaea HOM05D003893 ORTHO05D005167 3.1e-18 99.4 64 81.2
ATR0665G236 Amborella trichopoda HOM05D003893 ORTHO05D005167 1.6e-17 97.1 162 37.7
arahy.Tifrunner.gnm1.ann1.BV66IC Arachis hypogaea HOM05D000826 ORTHO05D006448 5.0e-16 92.0 52 90.4
arahy.Tifrunner.gnm1.ann1.T26UD0 Arachis hypogaea HOM05D000826 ORTHO05D006448 5.0e-16 92.0 52 90.4
arahy.Tifrunner.gnm1.ann1.V6RYFZ Arachis hypogaea HOM05D000826 ORTHO05D006448 5.0e-16 92.0 52 90.4
arahy.Tifrunner.gnm1.ann1.AZ80GT Arachis hypogaea HOM05D000826 ORTHO05D006448 7.2e-15 88.2 48 91.7
C01p32750 Brassica napus HOM05D003893 ORTHO05D017260 3.6e-14 85.9 140 42.1
BcaC09g49809 Brassica carinata HOM05D003893 ORTHO05D017260 4.7e-14 85.5 117 44.4
Gorai.002G189000 Gossypium raimondii HOM05D003893 ORTHO05D047700 2.3e-13 83.2 62 66.1
A01p25860 Brassica napus HOM05D003893 ORTHO05D017260 3.0e-13 82.8 107 44.9
CAN.G466.3 Capsicum annuum HOM05D003893 ORTHO05D005167 2.2e-11 76.6 62 56.5
SEGI_09425 Sequoiadendron giganteum HOM05D003893 ORTHO05D005167 1.8e-10 73.6 169 33.7
Gohir.D01G152650 Gossypium hirsutum HOM05D003893 ORTHO05D047700 3.1e-10 72.8 62 59.7
Ah.07g199150 Amaranthus hybridus HOM05D003893 ORTHO05D017260 9.1e-10 71.2 83 45.8
Psat1g032760 Pisum sativum HOM05D003893 ORTHO05D005167 9.1e-10 71.2 75 56.0
BcaC08g45749 Brassica carinata HOM05D003893 ORTHO05D021800 1.0e-08 67.8 236 28.8
arahy.Tifrunner.gnm1.ann1.3X15P1 Arachis hypogaea HOM05D000826 ORTHO05D006448 1.5e-07 63.9 35 85.7
BcaB04g18068 Brassica carinata HOM05D003893 ORTHO05D017260 4.2e-07 62.4 79 49.4
C05p27230 Brassica napus HOM05D003893 ORTHO05D005167 8.0e-06 58.2 193 27.5


User provided reference genes

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