Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_21742_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 3.0e-226 788.1 375 100.0
TPR.G2028 Trifolium pratense HOM05D004692 ORTHO05D006291 1.3e-202 709.5 374 89.0
Medtr4g112810 Medicago truncatula HOM05D004692 ORTHO05D006291 1.6e-200 702.6 375 87.5
Psat4g044040 Pisum sativum HOM05D004692 ORTHO05D006291 1.4e-196 689.5 375 85.6
Lj4g0008523 Lotus japonicus HOM05D004692 ORTHO05D006291 1.2e-195 686.4 375 84.8
Glyma.17G083400 Glycine max HOM05D004692 ORTHO05D006291 2.5e-193 678.7 376 84.3
Lalb_Chr13g0302611 Lupinus albus HOM05D004692 ORTHO05D006291 3.3e-193 678.3 371 84.4
Phvul.003G180900 Phaseolus vulgaris HOM05D004692 ORTHO05D006291 2.5e-188 662.1 373 82.3
arahy.Tifrunner.gnm1.ann1.51KNRK Arachis hypogaea HOM05D004692 ORTHO05D006291 1.2e-182 643.3 374 79.4
arahy.Tifrunner.gnm1.ann1.F96WR3 Arachis hypogaea HOM05D004692 ORTHO05D006291 1.5e-182 642.9 375 79.7
CsaV3_1G003170 Cucumis sativus L. HOM05D004692 ORTHO05D006291 1.7e-181 639.4 373 76.4
MELO3C017264.2 Cucumis melo HOM05D004692 ORTHO05D006291 6.5e-181 637.5 373 76.1
Hma1.2p1_0744F.1_g211680 Hydrangea macrophylla HOM05D004692 ORTHO05D006291 1.1e-180 636.7 372 75.8
Dinv36841 Davidia involucrata HOM05D004692 ORTHO05D006291 7.2e-180 634.0 372 76.9
MD14G1218000 Malus domestica HOM05D004692 ORTHO05D006291 1.6e-179 632.9 374 77.0
Prupe.5G211900 Prunus persica HOM05D004692 ORTHO05D006291 2.1e-179 632.5 374 77.0
arahy.Tifrunner.gnm1.ann1.6286TX Arachis hypogaea HOM05D004692 ORTHO05D006291 3.6e-179 631.7 383 77.0
Atru.chr9.678 Acer truncatum HOM05D004692 ORTHO05D006291 1.4e-178 629.8 373 76.7
FAN13G2141 Fragaria x ananassa HOM05D004692 ORTHO05D006291 2.3e-178 629.0 373 78.3
ClCG06G015290 Citrullus lanatus HOM05D004692 ORTHO05D006291 3.0e-178 628.6 372 76.1
MD06G1207500 Malus domestica HOM05D004692 ORTHO05D006291 3.9e-178 628.2 374 76.5
Cc04_g07930 Coffea canephora HOM05D004692 ORTHO05D006291 1.1e-177 626.7 372 77.4
Ciclev10020592m.g Citrus clementina HOM05D004692 ORTHO05D006291 2.0e-177 625.9 373 76.1
CiPaw.15G118000 Carya illinoinensis HOM05D004692 ORTHO05D006291 2.5e-177 625.5 373 76.9
RcHm_v2.0_Chr7g0184081 Rosa chinensis HOM05D004692 ORTHO05D006291 5.7e-177 624.4 371 77.9
QL10p021731 Quercus lobata HOM05D004692 ORTHO05D006291 1.3e-176 623.2 373 76.7
QL10p021836 Quercus lobata HOM05D004692 ORTHO05D006291 1.7e-176 622.9 373 76.4
PSO017G3616 Papaver somniferum HOM05D004692 ORTHO05D006291 2.2e-176 622.5 372 74.5
CSS0001909 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 4.8e-176 621.3 373 74.0
EL10Ac5g11213 Beta vulgaris HOM05D004692 ORTHO05D006291 8.2e-176 620.5 373 74.8
Solyc12g038970.3 Solanum lycopersicum HOM05D004692 ORTHO05D006291 8.2e-176 620.5 371 75.7
TWI81G0688 Tripterygium wilfordii HOM05D004692 ORTHO05D006291 8.2e-176 620.5 374 73.3
GSVIVG01008185001 Vitis vinifera HOM05D004692 ORTHO05D006291 8.2e-176 620.5 373 75.6
FAN18G3467 Fragaria x ananassa HOM05D004692 ORTHO05D006291 1.4e-175 619.8 373 77.2
FvH4_5g13050 Fragaria vesca HOM05D004692 ORTHO05D006291 1.8e-175 619.4 373 77.2
Nitab4.5_0007617g0010 Nicotiana tabacum HOM05D004692 ORTHO05D006291 1.8e-175 619.4 379 74.1
CSS0041638 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 3.1e-175 618.6 373 73.7
DCAR_015116 Daucus carota HOM05D004692 ORTHO05D006291 4.1e-175 618.2 372 75.3
vmacro17655 Vaccinium macrocarpon HOM05D004692 ORTHO05D006291 5.3e-175 617.8 372 74.7
DCAR_015115 Daucus carota HOM05D004692 ORTHO05D006291 9.1e-175 617.1 372 75.0
Sopen12g019180 Solanum pennellii HOM05D004692 ORTHO05D006291 1.2e-174 616.7 371 74.9
PSO478G1466 Papaver somniferum HOM05D004692 ORTHO05D006291 1.5e-174 616.3 372 73.7
Potri.015G055300 Populus trichocarpa HOM05D004692 ORTHO05D006291 1.5e-174 616.3 373 75.1
Sed0023319 Sechium edule HOM05D004692 ORTHO05D006291 1.5e-174 616.3 372 74.2
Aqoxy3G00609 Aquilegia oxysepala HOM05D004692 ORTHO05D006291 2.6e-174 615.5 373 73.7
Oeu058039.1 Olea europaea HOM05D004692 ORTHO05D006291 2.6e-174 615.5 372 73.7
Nn4g23609 Nelumbo nucifera HOM05D004692 ORTHO05D006291 5.9e-174 614.4 372 75.0
Lj5A139T82 Lonicera japonica HOM05D004692 ORTHO05D006291 7.7e-174 614.0 371 74.9
PGSC0003DMG400000653 Solanum tuberosum HOM05D004692 ORTHO05D006291 7.7e-174 614.0 371 75.2
arahy.Tifrunner.gnm1.ann1.RJWR3V Arachis hypogaea HOM05D004692 ORTHO05D006291 1.3e-173 613.2 374 76.5
Actinidia01418 Actinidia chinensis HOM05D004692 ORTHO05D006291 3.8e-173 611.7 383 73.9
Migut.J01255 Erythranthe guttata HOM05D004692 ORTHO05D006291 5.0e-173 611.3 367 73.8
Rhsim08G0150000 Rhododendron simsii HOM05D004692 ORTHO05D006291 5.0e-173 611.3 372 74.5
Peaxi162Scf00119g00017 Petunia axillaris HOM05D004692 ORTHO05D006291 6.5e-173 610.9 372 74.2
AUR62032158 Chenopodium quinoa HOM05D004692 ORTHO05D006291 1.1e-172 610.1 368 74.5
CAN.G471.4 Capsicum annuum HOM05D004692 ORTHO05D006291 1.4e-172 609.8 371 73.9
AUR62036914 Chenopodium quinoa HOM05D004692 ORTHO05D006291 1.4e-172 609.8 367 74.7
Hund09975 Selenicereus undatus HOM05D004692 ORTHO05D006291 1.4e-172 609.8 372 74.2
Ah.11g047310 Amaranthus hybridus HOM05D004692 ORTHO05D006291 1.9e-172 609.4 373 74.0
Gohir.D07G062400 Gossypium hirsutum HOM05D004692 ORTHO05D006291 9.4e-172 607.1 374 73.5
Gohir.A07G057600 Gossypium hirsutum HOM05D004692 ORTHO05D006291 3.6e-171 605.1 374 73.0
Manes.01G023900 Manihot esculenta HOM05D004692 ORTHO05D006291 3.6e-171 605.1 373 74.5
VMungo1215G1525 Vigna mungo HOM05D004692 ORTHO05D006291 4.7e-171 604.7 375 76.0
Ca_25716_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 7.9e-171 604.0 294 96.3
HanXRQChr16g0501991 Helianthus annuus HOM05D004692 ORTHO05D006291 1.0e-170 603.6 367 74.4
ECA232G0381 Erigeron canadensis HOM05D004692 ORTHO05D006291 1.4e-170 603.2 369 73.7
Gorai.001G065900 Gossypium raimondii HOM05D004692 ORTHO05D006291 3.0e-170 602.1 375 73.3
Ah.02g120970 Amaranthus hybridus HOM05D004692 ORTHO05D006291 5.1e-170 601.3 373 73.2
CANSAT80G0730 Cannabis sativa HOM05D004692 ORTHO05D006291 6.7e-170 600.9 373 71.6
Lsat_1_v5_gn_4_112840 Lactuca sativa HOM05D004692 ORTHO05D006291 6.7e-170 600.9 369 74.0
MSTRG.22946 Avicennia marina HOM05D004692 ORTHO05D006291 8.8e-170 600.5 372 72.0
Hund09942 Selenicereus undatus HOM05D004692 ORTHO05D006291 4.4e-169 598.2 391 70.1
C09p68780 Brassica napus HOM05D004692 ORTHO05D006291 9.7e-169 597.0 374 73.0
MBI14_g16236_MAGBIO Magnolia biondii HOM05D004692 ORTHO05D006291 9.7e-169 597.0 374 73.0
A10p28500 Brassica napus HOM05D004692 ORTHO05D006291 1.3e-168 596.7 373 72.1
Thhalv10013807m.g Eutrema salsugineum HOM05D004692 ORTHO05D006291 3.7e-168 595.1 373 72.9
THA.LOC104819389 Tarenaya hassleriana HOM05D004692 ORTHO05D006291 4.8e-168 594.7 372 72.3
BcaB08g37277 Brassica carinata HOM05D004692 ORTHO05D006291 3.1e-167 592.0 374 72.5
C03p04140 Brassica napus HOM05D004692 ORTHO05D006291 4.1e-167 591.7 369 72.6
ATR0691G179 Amborella trichopoda HOM05D004692 ORTHO05D006291 2.0e-166 589.3 372 72.8
BraA03t09714Z Brassica rapa HOM05D004692 ORTHO05D006291 1.0e-165 587.0 370 72.4
BolC3t12946H Brassica oleracea HOM05D004692 ORTHO05D006291 2.9e-165 585.5 370 72.2
BcaNung05091 Brassica carinata HOM05D004692 ORTHO05D006291 3.8e-165 585.1 371 72.2
A03p03660 Brassica napus HOM05D004692 ORTHO05D006291 5.0e-165 584.7 370 72.2
Carub.0006s0707 Capsella rubella HOM05D004692 ORTHO05D006291 6.5e-165 584.3 369 71.5
Eucgr.B00659 Eucalyptus grandis HOM05D004692 ORTHO05D006291 8.5e-165 583.9 370 73.0
Sp6g34780 Schrenkiella parvula HOM05D004692 ORTHO05D006291 1.1e-164 583.6 372 71.0
PGR083G2684 Punica granatum HOM05D004692 ORTHO05D006291 1.9e-164 582.8 373 71.8
SGA_v2.0_scaffold56G20037 Striga asiatica HOM05D004692 ORTHO05D006291 3.2e-164 582.0 357 73.1
CDE06G1750 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 4.2e-164 581.6 368 71.5
Thecc.03G112800 Theobroma cacao HOM05D004692 ORTHO05D006291 4.2e-164 581.6 372 72.6
AT5G08170 Arabidopsis thaliana HOM05D004692 ORTHO05D006291 7.2e-164 580.9 373 71.0
FAN08G1512 Fragaria x ananassa HOM05D004692 ORTHO05D006291 1.6e-163 579.7 348 76.7
AL6G18560 Arabidopsis lyrata HOM05D004692 ORTHO05D006291 2.1e-163 579.3 373 71.0
Aa31LG3G18370 Aethionema arabicum HOM05D004692 ORTHO05D006291 1.0e-162 577.0 403 66.5
SalBow5G2075 Salvia bowleyana HOM05D004692 ORTHO05D006291 1.8e-162 576.2 383 71.0
Duzib205G0043 Durio zibethinus HOM05D004692 ORTHO05D006291 5.7e-161 571.2 378 70.9
CDE07G1308 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 9.7e-161 570.5 374 69.5
Sc12g0006990 Simmondsia chinensis HOM05D004692 ORTHO05D006291 6.3e-160 567.8 372 68.3
Actinidia10430 Actinidia chinensis HOM05D004692 ORTHO05D006291 1.6e-158 563.1 380 69.7
Sabra15G0080100 Salix brachista HOM05D004692 ORTHO05D006291 2.6e-158 562.4 461 59.9
BolC9t59625H Brassica oleracea HOM05D004692 ORTHO05D006291 5.0e-157 558.1 374 69.8
BraA10t44898Z Brassica rapa HOM05D004692 ORTHO05D006291 5.0e-157 558.1 373 68.9
Os04g0466600 Oryza sativa ssp. japonica HOM05D004692 ORTHO05D006291 6.1e-155 551.2 371 66.8
TAR374G0590 Trochodendron aralioides HOM05D004692 ORTHO05D006291 6.7e-154 547.7 328 74.1
HanXRQChr16g0501981 Helianthus annuus HOM05D004692 ORTHO05D006291 1.5e-153 546.6 420 62.9
SHI18993 Sapria himalayana HOM05D004692 ORTHO05D006291 3.3e-153 545.4 403 64.5
Nitab4.5_0000208g0050 Nicotiana tabacum HOM05D004692 ORTHO05D006291 5.7e-153 544.7 406 65.0
HPP92_019130 Vanilla planifolia HOM05D004692 ORTHO05D006291 2.2e-152 542.7 374 66.0
Mapoly0016s0188 Marchantia polymorpha HOM05D004692 ORTHO05D006291 3.5e-150 535.4 373 65.1
Pp3c14_21790 Physcomitrium patens HOM05D004692 ORTHO05D006291 1.7e-149 533.1 370 64.9
BcaB01g05624 Brassica carinata HOM05D004692 ORTHO05D006291 2.9e-149 532.3 370 67.6
unitig_26.g9673 Utricularia gibba HOM05D004692 ORTHO05D006291 2.9e-149 532.3 371 66.0
SMO115G0272 Selaginella moellendorffii HOM05D004692 ORTHO05D006291 7.2e-148 527.7 367 66.2
AagrBONN_evm.TU.Sc2ySwM_117.2364 Anthoceros agrestis HOM05D004692 ORTHO05D006291 8.8e-146 520.8 374 62.8
HPP92_019140 Vanilla planifolia HOM05D004692 ORTHO05D006291 2.4e-143 512.7 360 65.0
Haze_18550 Corylus avellana HOM05D004692 ORTHO05D006291 4.5e-142 508.4 308 76.3
Zm00001eb424480 Zea mays HOM05D004692 ORTHO05D006291 1.8e-135 486.5 416 58.4
arahy.Tifrunner.gnm1.ann1.U185V9 Arachis hypogaea HOM05D004692 ORTHO05D006291 2.7e-134 482.6 374 64.2
CBR_g22406 Chara braunii HOM05D004692 ORTHO05D006291 4.0e-130 468.8 385 60.5
Medtr4g110140 Medicago truncatula HOM05D004692 ORTHO05D006291 1.2e-126 457.2 386 60.9
CARHR205010 Cardamine hirsuta HOM05D004692 ORTHO05D006291 3.1e-122 442.6 274 74.5
Cfa019856 Carpinus fangiana HOM05D004692 ORTHO05D006291 1.0e-101 374.4 344 55.8
CSS0041488 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 4.4e-97 359.0 250 67.2
Sc12g0006960 Simmondsia chinensis HOM05D004692 ORTHO05D006291 2.2e-96 356.7 216 73.6
CSS0026593 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 3.2e-95 352.8 231 69.7
CSS0018290 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 4.6e-94 349.0 222 71.2
Pp3c13_22750 Physcomitrium patens HOM05D004692 ORTHO05D006291 3.9e-93 345.9 385 46.5
PRCOL_00005028 Prasinoderma coloniale HOM05D004692 ORTHO05D006291 4.2e-87 325.9 395 44.8
Cre01.g009350 Chlamydomonas reinhardtii HOM05D004692 ORTHO05D006291 7.9e-86 321.6 383 44.1
CSS0021853 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 2.2e-80 303.5 204 67.6
Hund10163 Selenicereus undatus HOM05D004692 ORTHO05D006291 8.4e-80 301.6 374 43.6
CSS0048768 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 7.9e-78 295.0 165 76.4
Cpa.g.c37454 Carica papaya HOM05D004692 ORTHO05D006291 3.3e-68 263.1 170 66.5
Lsat_1_v5_gn_5_119361 Lactuca sativa HOM05D004692 ORTHO05D006291 1.4e-63 247.7 171 67.8
Cre01.g053300 Chlamydomonas reinhardtii HOM05D004692 ORTHO05D006291 1.0e-45 188.3 477 28.7
Cpa.g.c37318 Carica papaya HOM05D004692 ORTHO05D006291 8.8e-45 185.3 95 87.4
Ca_29974_v3 Cicer arietinum L. HOM05D000837 ORTHO05D008386 4.2e-39 166.4 85 95.3
FAN04G1239 Fragaria x ananassa HOM05D004692 ORTHO05D006291 4.4e-36 156.4 129 66.7
C05p13090 Brassica napus HOM05D004692 ORTHO05D006291 3.2e-31 140.2 103 63.1
BcaC05g25434 Brassica carinata HOM05D004692 ORTHO05D006291 5.5e-31 139.4 103 63.1
Lsat_1_v5_gn_3_89601 Lactuca sativa HOM05D004692 ORTHO05D006291 4.1e-26 123.2 95 61.1
CDE06G1955 Ceratophyllum demersum HOM05D004692 ORTHO05D019764 7.5e-20 102.4 79 60.8
RcHm_v2.0_Chr2g0128461 Rosa chinensis HOM05D004692 ORTHO05D019764 1.4e-18 98.2 163 36.8
RcHm_v2.0_Chr4g0407261 Rosa chinensis HOM05D004692 ORTHO05D019764 3.9e-16 90.1 45 88.9
arahy.Tifrunner.gnm1.ann1.5N8491 Arachis hypogaea HOM05D004692 ORTHO05D019764 5.6e-15 86.3 46 80.4
RcHm_v2.0_Chr2g0129061 Rosa chinensis HOM05D004692 ORTHO05D006291 3.6e-14 83.6 43 81.4
SGA_v2.0_scaffold26G11385 Striga asiatica HOM05D004692 ORTHO05D019764 3.6e-14 83.6 47 80.9
RcHm_v2.0_Chr2g0164691 Rosa chinensis HOM05D004692 ORTHO05D019764 6.2e-14 82.8 41 87.8
Cpa.g.c45305 Carica papaya HOM05D004692 ORTHO05D006291 4.7e-06 56.6 29 69.0


User provided reference genes

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