Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_21691_v3 Cicer arietinum L. HOM05D005966 ORTHO05D007584 0.0e+00 1297.0 659 100.0
Medtr4g114100 Medicago truncatula HOM05D005966 ORTHO05D007584 0.0e+00 1155.2 659 90.1
TPR.G10691 Trifolium pratense HOM05D005966 ORTHO05D007584 0.0e+00 1121.3 658 87.2
Psat4g039400 Pisum sativum HOM05D005966 ORTHO05D007584 0.0e+00 1104.7 660 85.8
VMungo1215G0752 Vigna mungo HOM05D005966 ORTHO05D007584 4.3e-305 1050.8 660 82.4
Glyma.05G009700 Glycine max HOM05D005966 ORTHO05D007584 4.8e-304 1047.3 658 82.4
Lj4g0014642 Lotus japonicus HOM05D005966 ORTHO05D007584 1.1e-303 1046.2 656 82.3
Phvul.003G161800 Phaseolus vulgaris HOM05D005966 ORTHO05D007584 3.1e-303 1044.6 660 82.3
Glyma.17G117600 Glycine max HOM05D005966 ORTHO05D007584 3.8e-301 1037.7 659 82.1
Lalb_Chr07g0178861 Lupinus albus HOM05D005966 ORTHO05D007584 4.9e-301 1037.3 658 80.9
arahy.Tifrunner.gnm1.ann1.QB31BF Arachis hypogaea HOM05D005966 ORTHO05D007584 1.6e-283 979.2 666 76.4
arahy.Tifrunner.gnm1.ann1.Z0FLIL Arachis hypogaea HOM05D005966 ORTHO05D007584 2.0e-278 962.2 675 74.7
CiPaw.04G170200 Carya illinoinensis HOM05D005966 ORTHO05D007584 4.9e-240 834.7 647 66.3
Cfa003353 Carpinus fangiana HOM05D005966 ORTHO05D007584 3.3e-236 822.0 658 64.6
Haze_25609 Corylus avellana HOM05D005966 ORTHO05D007584 5.6e-236 821.2 668 63.8
Atru.chr7.1212 Acer truncatum HOM05D005966 ORTHO05D007584 1.6e-235 819.7 662 65.4
Potri.015G057100 Populus trichocarpa HOM05D005966 ORTHO05D007584 4.1e-231 805.1 665 63.0
Prupe.7G240500 Prunus persica HOM05D005966 ORTHO05D007584 3.5e-230 802.0 658 63.7
Dinv36541 Davidia involucrata HOM05D005966 ORTHO05D007584 6.0e-230 801.2 659 63.6
Duzib187G1826 Durio zibethinus HOM05D005966 ORTHO05D007584 3.9e-229 798.5 660 64.2
RcHm_v2.0_Chr7g0212931 Rosa chinensis HOM05D005966 ORTHO05D007584 3.9e-229 798.5 659 64.0
GSVIVG01015509001 Vitis vinifera HOM05D005966 ORTHO05D007584 5.0e-229 798.1 658 62.6
CANSAT11G2564 Cannabis sativa HOM05D005966 ORTHO05D007584 9.5e-228 793.9 655 63.2
FvH4_5g23630 Fragaria vesca HOM05D005966 ORTHO05D007584 1.2e-227 793.5 656 63.9
FAN18G1628 Fragaria x ananassa HOM05D005966 ORTHO05D007584 1.2e-227 793.5 656 64.0
FAN13G2896 Fragaria x ananassa HOM05D005966 ORTHO05D007584 1.6e-227 793.1 656 63.9
MD15G1175600 Malus domestica HOM05D005966 ORTHO05D007584 4.0e-226 788.5 658 62.2
Gorai.001G041100 Gossypium raimondii HOM05D005966 ORTHO05D007584 1.7e-224 783.1 656 62.3
Thecc.09G123800 Theobroma cacao HOM05D005966 ORTHO05D007584 2.9e-224 782.3 662 63.6
CsaV3_5G040100 Cucumis sativus L. HOM05D005966 ORTHO05D007584 3.7e-224 781.9 657 62.7
ClCG08G000940 Citrullus lanatus HOM05D005966 ORTHO05D007584 1.4e-223 780.0 657 62.7
Ciclev10007689m.g Citrus clementina HOM05D005966 ORTHO05D007584 2.4e-223 779.2 660 60.9
Gohir.A07G035000 Gossypium hirsutum HOM05D005966 ORTHO05D007584 5.4e-223 778.1 659 62.5
MELO3C022187.2 Cucumis melo HOM05D005966 ORTHO05D007584 7.0e-223 777.7 657 62.4
Eucgr.C04186 Eucalyptus grandis HOM05D005966 ORTHO05D007584 1.2e-222 776.9 655 63.2
Sabra15G0082400 Salix brachista HOM05D005966 ORTHO05D007584 4.6e-222 775.0 665 61.4
Hma1.2p1_0018F.1_g012590 Hydrangea macrophylla HOM05D005966 ORTHO05D007584 2.5e-220 769.2 663 60.9
FAN18G2691 Fragaria x ananassa HOM05D005966 ORTHO05D007584 2.1e-219 766.1 633 64.1
Gorai.009G019100 Gossypium raimondii HOM05D005966 ORTHO05D007584 2.1e-219 766.1 666 62.2
Sed0002176 Sechium edule HOM05D005966 ORTHO05D007584 9.9e-217 757.3 655 61.7
Gohir.A05G017800 Gossypium hirsutum HOM05D005966 ORTHO05D007584 8.3e-216 754.2 666 61.4
PGR102G3358 Punica granatum HOM05D005966 ORTHO05D007584 2.4e-215 752.7 653 61.4
Nn2g12002 Nelumbo nucifera HOM05D005966 ORTHO05D007584 6.0e-214 748.0 661 60.1
TAR636G0633 Trochodendron aralioides HOM05D005966 ORTHO05D007584 1.2e-209 733.8 632 62.0
Actinidia07431 Actinidia chinensis HOM05D005966 ORTHO05D007584 2.6e-209 732.6 659 59.3
vmacro06121 Vaccinium macrocarpon HOM05D005966 ORTHO05D007584 2.2e-208 729.6 675 57.3
vmacro06181 Vaccinium macrocarpon HOM05D005966 ORTHO05D007584 2.2e-208 729.6 675 57.3
Cc06_g08730 Coffea canephora HOM05D005966 ORTHO05D007584 2.1e-206 723.0 665 58.0
QL02p087915 Quercus lobata HOM05D005966 ORTHO05D007584 3.5e-206 722.2 913 46.8
Nitab4.5_0010819g0010 Nicotiana tabacum HOM05D005966 ORTHO05D007584 5.1e-205 718.4 674 58.6
PGSC0003DMG400020667 Solanum tuberosum HOM05D005966 ORTHO05D007584 5.1e-205 718.4 666 58.7
Nitab4.5_0007523g0010 Nicotiana tabacum HOM05D005966 ORTHO05D007584 1.1e-204 717.2 671 58.7
Sopen12g002600 Solanum pennellii HOM05D005966 ORTHO05D007584 1.5e-204 716.8 666 58.4
CSS0033485 Camellia sinensis var. sinensis HOM05D005966 ORTHO05D007584 1.9e-204 716.5 668 58.8
Lj7C631G5 Lonicera japonica HOM05D005966 ORTHO05D007584 2.5e-204 716.1 760 53.7
Solyc12g006650.2 Solanum lycopersicum HOM05D005966 ORTHO05D007584 3.3e-204 715.7 665 58.5
CAN.G377.10 Capsicum annuum HOM05D005966 ORTHO05D007584 1.1e-202 710.7 666 58.3
Actinidia26399 Actinidia chinensis HOM05D005966 ORTHO05D007584 3.1e-202 709.1 682 57.5
Gohir.D07G039000 Gossypium hirsutum HOM05D005966 ORTHO05D007584 6.9e-202 708.0 659 58.4
Manes.06G049700 Manihot esculenta HOM05D005966 ORTHO05D007584 7.6e-201 704.5 660 58.5
DCAR_014873 Daucus carota HOM05D005966 ORTHO05D007584 2.1e-198 696.4 666 57.2
SGA_v2.0_scaffold163G38051 Striga asiatica HOM05D005966 ORTHO05D007584 2.1e-198 696.4 664 56.0
Aqoxy5G00491 Aquilegia oxysepala HOM05D005966 ORTHO05D007584 1.0e-197 694.1 662 56.6
MSTRG.14036 Avicennia marina HOM05D005966 ORTHO05D007584 3.9e-197 692.2 660 55.9
PSO455G0207 Papaver somniferum HOM05D005966 ORTHO05D007584 8.7e-197 691.0 653 56.4
PSO170G3915 Papaver somniferum HOM05D005966 ORTHO05D007584 2.5e-196 689.5 653 56.4
Oeu018459.1 Olea europaea HOM05D005966 ORTHO05D007584 5.6e-196 688.3 642 56.9
Peaxi162Scf00984g00027 Petunia axillaris HOM05D005966 ORTHO05D007584 1.3e-195 687.2 637 58.2
Gohir.D05G018700 Gossypium hirsutum HOM05D005966 ORTHO05D007584 1.4e-194 683.7 666 56.9
Carub.0006s1857 Capsella rubella HOM05D005966 ORTHO05D007584 9.0e-194 681.0 655 56.6
CARHR192650 Cardamine hirsuta HOM05D005966 ORTHO05D007584 2.0e-193 679.9 657 56.2
Sp6g24230 Schrenkiella parvula HOM05D005966 ORTHO05D007584 2.0e-193 679.9 656 57.2
Oeu021589.1 Olea europaea HOM05D005966 ORTHO05D007584 9.9e-193 677.6 631 56.4
THA.LOC104799647 Tarenaya hassleriana HOM05D005966 ORTHO05D007584 1.1e-191 674.1 656 55.8
ECA236G0249 Erigeron canadensis HOM05D005966 ORTHO05D007584 3.2e-191 672.5 663 55.4
AL6G31730 Arabidopsis lyrata HOM05D005966 ORTHO05D007584 4.2e-191 672.2 654 56.0
Thhalv10012923m.g Eutrema salsugineum HOM05D005966 ORTHO05D007584 7.1e-191 671.4 656 56.7
Lsat_1_v5_gn_8_59020 Lactuca sativa HOM05D005966 ORTHO05D007584 4.6e-190 668.7 667 55.2
AT5G20170 Arabidopsis thaliana HOM05D005966 ORTHO05D007584 6.0e-190 668.3 655 55.7
Aa31LG1G14440 Aethionema arabicum HOM05D005966 ORTHO05D007584 7.9e-190 667.9 660 54.5
C03p11480 Brassica napus HOM05D005966 ORTHO05D007584 7.9e-190 667.9 660 56.4
Rhsim03G0247300 Rhododendron simsii HOM05D005966 ORTHO05D007584 7.9e-190 667.9 585 61.2
Migut.E01544 Erythranthe guttata HOM05D005966 ORTHO05D007584 1.0e-189 667.5 656 55.6
A03p09900 Brassica napus HOM05D005966 ORTHO05D007584 1.8e-189 666.8 657 56.0
SalBow1G1471 Salvia bowleyana HOM05D005966 ORTHO05D007584 5.1e-189 665.2 735 50.2
BolC3t13620H Brassica oleracea HOM05D005966 ORTHO05D007584 1.1e-188 664.1 656 55.8
HanXRQChr04g0104201 Helianthus annuus HOM05D005966 ORTHO05D007584 2.1e-187 659.8 665 53.8
BraA03t10303Z Brassica rapa HOM05D005966 ORTHO05D007584 7.6e-185 651.4 660 55.5
Sabra15G0082900 Salix brachista HOM05D005966 ORTHO05D007584 2.7e-182 642.9 676 53.1
AUR62033484 Chenopodium quinoa HOM05D005966 ORTHO05D007584 1.1e-180 637.5 655 52.2
AUR62011094 Chenopodium quinoa HOM05D005966 ORTHO05D007584 1.6e-179 633.6 656 52.0
Hund26492 Selenicereus undatus HOM05D005966 ORTHO05D007584 3.4e-177 625.9 656 52.0
EL10Ac8g18623 Beta vulgaris HOM05D005966 ORTHO05D007584 5.5e-175 618.6 657 51.0
ATR1156G034 Amborella trichopoda HOM05D005966 ORTHO05D007584 1.8e-170 603.6 672 48.8
Ah.14g080180 Amaranthus hybridus HOM05D005966 ORTHO05D007584 1.4e-167 594.0 626 50.8
HPP92_009844 Vanilla planifolia HOM05D005966 ORTHO05D007584 5.7e-164 582.0 659 49.0
MD02G1034800 Malus domestica HOM05D005966 ORTHO05D007584 4.5e-161 572.4 678 50.7
Os12g0638600 Oryza sativa ssp. japonica HOM05D005966 ORTHO05D007584 5.1e-157 558.9 666 47.6
Cpa.g.sc75.51 Carica papaya HOM05D005966 ORTHO05D007584 4.8e-147 525.8 491 56.8
Zm00001eb207940 Zea mays HOM05D005966 ORTHO05D007584 8.2e-147 525.0 657 45.1
SEGI_37567 Sequoiadendron giganteum HOM05D005966 ORTHO05D007584 1.7e-139 500.7 706 40.4
CDE01G0041 Ceratophyllum demersum HOM05D005966 ORTHO05D007584 2.4e-138 496.9 555 50.5
unitig_578.g16582 Utricularia gibba HOM05D005966 ORTHO05D007584 5.2e-133 479.2 651 43.0
Glyma.14G007400 Glycine max HOM05D005966 ORTHO05D007584 5.0e-128 462.6 296 81.4
Sc08g0006730 Simmondsia chinensis HOM05D005966 ORTHO05D007584 2.9e-120 436.8 523 46.3
Zm00001eb334260 Zea mays HOM05D005966 ORTHO05D007584 1.3e-112 411.4 535 45.0
Mapoly0010s0026 Marchantia polymorpha HOM05D005966 ORTHO05D007584 7.3e-87 325.9 718 31.8
SHI18656 Sapria himalayana HOM05D005966 ORTHO05D007584 2.1e-81 307.8 534 38.2
Pp3c3_25450 Physcomitrium patens HOM05D005966 ORTHO05D007584 1.0e-80 305.4 652 33.0
COL.COLO4_05778 Corchorus olitorius HOM05D005966 ORTHO05D007584 5.3e-77 293.1 373 47.2
SMO200G0046 Selaginella moellendorffii HOM05D005966 ORTHO05D007584 1.1e-74 285.4 663 29.7
FAN08G0676 Fragaria x ananassa HOM05D005966 ORTHO05D007584 2.0e-60 238.0 162 76.5
AagrBONN_evm.TU.Sc2ySwM_117.630 Anthoceros agrestis HOM05D005966 ORTHO05D007584 4.3e-47 193.7 470 30.2
Sc08g0006740 Simmondsia chinensis HOM05D005966 ORTHO05D007584 5.5e-42 176.8 146 63.0
TAR625G1387 Trochodendron aralioides HOM05D005966 ORTHO05D007584 1.1e-39 169.1 397 35.3
SHI18657 Sapria himalayana HOM05D005966 ORTHO05D007584 2.8e-38 164.5 137 63.5
Dinv41526 Davidia involucrata HOM05D006513 ORTHO05D008150 4.1e-37 160.6 165 52.1
Cpa.g.sc75.52 Carica papaya HOM05D005966 ORTHO05D007584 3.5e-28 131.0 96 71.9
Aqoxy7G02129 Aquilegia oxysepala HOM05D005966 ORTHO05D007584 1.1e-26 125.9 159 50.3
CBR_g48370 Chara braunii HOM05D005966 ORTHO05D000048 2.1e-25 121.7 252 35.7
Hma1.2p1_0090F.1_g045710 Hydrangea macrophylla HOM05D005966 ORTHO05D007584 8.5e-19 99.8 136 43.4
COL.COLO4_05779 Corchorus olitorius HOM05D005966 ORTHO05D007584 2.3e-16 91.7 57 70.2
GSVIVG01027692001 Vitis vinifera HOM05D005966 ORTHO05D007584 1.3e-14 85.9 54 70.4
CAN.G925.3 Capsicum annuum HOM05D005966 ORTHO05D007584 8.3e-14 83.2 86 47.7
Lsat_1_v5_gn_8_82580 Lactuca sativa HOM05D005966 ORTHO05D007584 3.8e-11 74.3 50 70.0
CDE11G0857 Ceratophyllum demersum HOM05D005966 ORTHO05D007584 3.3e-10 71.2 66 56.1
CAN.G1289.8 Capsicum annuum HOM05D005966 ORTHO05D007584 8.0e-09 66.6 56 51.8
TAR626G0958 Trochodendron aralioides HOM05D005966 ORTHO05D007584 1.5e-07 62.4 37 83.8
TAR362G1246 Trochodendron aralioides HOM05D005966 ORTHO05D007584 7.5e-07 60.1 37 81.1
AUR62041250 Chenopodium quinoa HOM05D005966 ORTHO05D007584 2.2e-06 58.5 51 56.9


User provided reference genes

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