Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_21575_v3 Cicer arietinum L. HOM05D003539 ORTHO05D004111 0.0e+00 1212.2 621 100.0
Glyma.16G112800 Glycine max HOM05D003539 ORTHO05D004111 4.3e-262 907.9 621 74.4
Glyma.09G196200 Glycine max HOM05D003539 ORTHO05D004111 9.8e-259 896.7 622 73.8
Medtr4g117680 Medicago truncatula HOM05D003539 ORTHO05D004111 7.0e-249 864.0 613 73.4
Phvul.010G020100 Phaseolus vulgaris HOM05D003539 ORTHO05D004111 6.2e-245 850.9 617 71.6
Psat7g042440 Pisum sativum HOM05D003539 ORTHO05D004111 8.1e-245 850.5 652 69.9
VMungo1309G1473 Vigna mungo HOM05D003539 ORTHO05D004111 6.8e-244 847.4 618 72.0
Psat3g044960 Pisum sativum HOM05D003539 ORTHO05D004111 1.9e-241 839.3 606 72.9
TPR.G29658 Trifolium pratense HOM05D003539 ORTHO05D004111 5.4e-241 837.8 627 69.9
Lalb_Chr09g0334501 Lupinus albus HOM05D003539 ORTHO05D004111 1.6e-240 836.3 623 71.1
Lalb_Chr05g0229501 Lupinus albus HOM05D003539 ORTHO05D004111 1.2e-235 820.1 603 71.3
Lj4g0013403 Lotus japonicus HOM05D003539 ORTHO05D004111 1.0e-231 807.0 621 70.2
arahy.Tifrunner.gnm1.ann1.4LH58N Arachis hypogaea HOM05D003539 ORTHO05D004111 3.5e-224 781.9 711 60.1
arahy.Tifrunner.gnm1.ann1.PPI4NM Arachis hypogaea HOM05D003539 ORTHO05D004111 4.6e-224 781.6 689 61.8
arahy.Tifrunner.gnm1.ann1.VZS2MK Arachis hypogaea HOM05D003539 ORTHO05D004111 2.5e-222 775.8 724 59.4
arahy.Tifrunner.gnm1.ann1.UQ0JCX Arachis hypogaea HOM05D003539 ORTHO05D004111 1.3e-221 773.5 718 59.7
arahy.Tifrunner.gnm1.ann1.JIK3X3 Arachis hypogaea HOM05D003539 ORTHO05D004111 2.5e-214 749.2 699 59.2
GSVIVG01026448001 Vitis vinifera HOM05D003539 ORTHO05D004111 2.9e-186 656.0 610 57.5
Dinv40214 Davidia involucrata HOM05D003539 ORTHO05D004111 7.2e-185 651.4 612 57.0
CSS0035723 Camellia sinensis var. sinensis HOM05D003539 ORTHO05D004111 2.3e-183 646.4 613 57.1
Atru.chr3.55 Acer truncatum HOM05D003539 ORTHO05D004111 3.9e-183 645.6 615 57.6
TWI79G1391 Tripterygium wilfordii HOM05D003539 ORTHO05D004111 1.5e-179 633.6 609 56.2
Dinv28297 Davidia involucrata HOM05D003539 ORTHO05D004111 5.0e-178 628.6 612 55.4
Manes.01G157300 Manihot esculenta HOM05D003539 ORTHO05D004111 6.5e-178 628.2 622 56.8
TAR381G1444 Trochodendron aralioides HOM05D003539 ORTHO05D004111 4.2e-177 625.5 612 54.6
Hma1.2p1_0085F.1_g044410 Hydrangea macrophylla HOM05D003539 ORTHO05D004111 2.1e-176 623.2 619 54.8
vmacro18474 Vaccinium macrocarpon HOM05D003539 ORTHO05D004111 3.6e-176 622.5 631 54.2
Eucgr.J02557 Eucalyptus grandis HOM05D003539 ORTHO05D004111 1.0e-175 620.9 617 54.0
Sed0003470 Sechium edule HOM05D003539 ORTHO05D004111 1.5e-174 617.1 616 54.7
PGR044G1248 Punica granatum HOM05D003539 ORTHO05D004111 2.0e-174 616.7 621 53.8
Thecc.01G002200 Theobroma cacao HOM05D003539 ORTHO05D004111 3.3e-174 615.9 623 56.0
Nn5g28137 Nelumbo nucifera HOM05D003539 ORTHO05D004111 4.4e-174 615.5 615 54.1
Gorai.003G064600 Gossypium raimondii HOM05D003539 ORTHO05D004111 1.7e-173 613.6 621 55.7
Gohir.D03G066500 Gossypium hirsutum HOM05D003539 ORTHO05D004111 3.7e-173 612.5 621 55.6
QL06p053198 Quercus lobata HOM05D003539 ORTHO05D004111 1.2e-171 607.4 616 54.5
ClCG02G000270 Citrullus lanatus HOM05D003539 ORTHO05D004111 7.7e-171 604.7 644 53.4
Sc06g0005250 Simmondsia chinensis HOM05D003539 ORTHO05D004111 4.2e-169 599.0 619 50.7
Haze_03640 Corylus avellana HOM05D003539 ORTHO05D004111 2.7e-168 596.3 623 54.1
TAR376G1176 Trochodendron aralioides HOM05D003539 ORTHO05D004111 1.4e-167 594.0 584 56.0
Oeu010807.1 Olea europaea HOM05D003539 ORTHO05D004111 8.8e-167 591.3 616 52.1
Lsat_1_v5_gn_5_30740 Lactuca sativa HOM05D003539 ORTHO05D004111 3.3e-166 589.3 608 53.3
Oeu063413.2 Olea europaea HOM05D003539 ORTHO05D004111 4.4e-166 589.0 617 52.2
Cfa007110 Carpinus fangiana HOM05D003539 ORTHO05D004111 5.7e-166 588.6 623 53.8
Rhsim08G0026200 Rhododendron simsii HOM05D003539 ORTHO05D004111 9.1e-164 581.3 635 52.0
CiPaw.15G173100 Carya illinoinensis HOM05D003539 ORTHO05D004111 1.2e-163 580.9 609 53.4
CANSAT35G0647 Cannabis sativa HOM05D003539 ORTHO05D004111 4.5e-163 578.9 609 51.9
Potri.005G098500 Populus trichocarpa HOM05D003539 ORTHO05D004111 4.5e-163 578.9 625 51.8
CsaV3_3G008890 Cucumis sativus L. HOM05D003539 ORTHO05D004111 7.7e-163 578.2 551 56.6
Prupe.7G186400 Prunus persica HOM05D003539 ORTHO05D004111 1.3e-162 577.4 605 53.4
Manes.11G091200 Manihot esculenta HOM05D003539 ORTHO05D004111 1.1e-161 574.3 624 51.8
Sed0013779 Sechium edule HOM05D003539 ORTHO05D004111 5.5e-161 572.0 525 56.2
MSTRG.20424 Avicennia marina HOM05D003539 ORTHO05D004111 2.1e-160 570.1 620 51.0
Lj2C504G7 Lonicera japonica HOM05D003539 ORTHO05D004111 3.0e-159 566.2 519 57.6
ClCG05G001500 Citrullus lanatus HOM05D003539 ORTHO05D004111 6.8e-159 565.1 643 51.3
MD02G1108900 Malus domestica HOM05D003539 ORTHO05D004111 6.8e-159 565.1 624 51.3
COL.COLO4_16224 Corchorus olitorius HOM05D003539 ORTHO05D004111 2.0e-158 563.5 615 52.5
ECA233G1070 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.4e-158 562.4 606 50.7
Cc07_g12170 Coffea canephora HOM05D003539 ORTHO05D004111 9.8e-158 561.2 620 51.5
Sabra05G0080900 Salix brachista HOM05D003539 ORTHO05D004111 1.7e-157 560.5 592 52.0
HanXRQChr16g0510861 Helianthus annuus HOM05D003539 ORTHO05D004111 2.2e-157 560.1 604 51.2
THA.LOC104814350 Tarenaya hassleriana HOM05D003539 ORTHO05D004111 3.7e-157 559.3 606 52.0
Aa31LG6G11830 Aethionema arabicum HOM05D003539 ORTHO05D004111 1.2e-155 554.3 607 49.8
MELO3C006107.2 Cucumis melo HOM05D003539 ORTHO05D004111 4.5e-155 552.4 536 56.7
Nitab4.5_0000588g0180 Nicotiana tabacum HOM05D003539 ORTHO05D004111 2.3e-154 550.1 610 50.7
Nitab4.5_0000855g0080 Nicotiana tabacum HOM05D003539 ORTHO05D004111 3.8e-154 549.3 610 50.3
AL4G30740 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 3.6e-152 542.7 630 50.0
MBI04_g31205_MAGBIO Magnolia biondii HOM05D003539 ORTHO05D004111 8.9e-151 538.1 623 49.8
EL10Ac4g09711 Beta vulgaris HOM05D003539 ORTHO05D004111 3.4e-150 536.2 625 49.0
Nitab4.5_0003096g0020 Nicotiana tabacum HOM05D003539 ORTHO05D004111 9.8e-150 534.6 591 50.8
Hund21770 Selenicereus undatus HOM05D003539 ORTHO05D004111 1.3e-149 534.3 637 49.6
SGA_v2.0_scaffold36G14401 Striga asiatica HOM05D003539 ORTHO05D004111 2.2e-149 533.5 617 48.5
SGA_v2.0_scaffold172G38971 Striga asiatica HOM05D003539 ORTHO05D004111 6.3e-149 531.9 676 46.2
Migut.A00468 Erythranthe guttata HOM05D003539 ORTHO05D004111 7.0e-148 528.5 630 47.1
HanXRQChr09g0270331 Helianthus annuus HOM05D003539 ORTHO05D004111 2.7e-147 526.6 529 52.9
AT2G34750 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 3.5e-147 526.2 629 48.6
Thhalv10007103m.g Eutrema salsugineum HOM05D003539 ORTHO05D004111 4.5e-147 525.8 614 48.9
Solyc02g082340.3 Solanum lycopersicum HOM05D003539 ORTHO05D004111 4.5e-147 525.8 612 48.2
CARHR128910 Cardamine hirsuta HOM05D003539 ORTHO05D004111 7.8e-147 525.0 608 48.7
Sp4g17040 Schrenkiella parvula HOM05D003539 ORTHO05D004111 7.8e-147 525.0 627 48.3
Aa31LG10G6570 Aethionema arabicum HOM05D003539 ORTHO05D004111 2.9e-146 523.1 621 48.0
AL1G44630 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 5.0e-146 522.3 630 47.3
Aqoxy6G01535 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 1.5e-145 520.8 618 48.5
Sopen02g027000 Solanum pennellii HOM05D003539 ORTHO05D004111 1.2e-144 517.7 610 48.0
CAN.G1428.5 Capsicum annuum HOM05D003539 ORTHO05D004111 3.6e-144 516.2 613 47.8
Thhalv10016395m.g Eutrema salsugineum HOM05D003539 ORTHO05D004111 1.0e-143 514.6 610 48.2
Haze_00123 Corylus avellana HOM05D003539 ORTHO05D004111 3.1e-143 513.1 512 55.5
Carub.0004s1644 Capsella rubella HOM05D003539 ORTHO05D004111 8.9e-143 511.5 608 48.4
BcaB06g28796 Brassica carinata HOM05D003539 ORTHO05D004111 2.6e-142 510.0 623 47.2
Actinidia28753 Actinidia chinensis HOM05D003539 ORTHO05D004111 1.1e-140 504.6 617 49.3
PSO017G0405 Papaver somniferum HOM05D003539 ORTHO05D004111 1.1e-140 504.6 614 47.9
Ah.06g188300 Amaranthus hybridus HOM05D003539 ORTHO05D004111 1.4e-140 504.2 620 47.9
PSO170G6051 Papaver somniferum HOM05D003539 ORTHO05D004111 1.2e-139 501.1 606 47.7
Duzib147G0916 Durio zibethinus HOM05D003539 ORTHO05D004111 7.8e-139 498.4 616 48.9
A03p19290 Brassica napus HOM05D003539 ORTHO05D004111 1.0e-138 498.0 632 47.0
Sc09g0001980 Simmondsia chinensis HOM05D003539 ORTHO05D004111 1.3e-138 497.7 510 53.3
BolC3t14644H Brassica oleracea HOM05D003539 ORTHO05D004111 2.3e-138 496.9 628 46.8
BraA03t11183Z Brassica rapa HOM05D003539 ORTHO05D004111 3.9e-138 496.1 632 46.8
Carub.0001s2885 Capsella rubella HOM05D003539 ORTHO05D004111 5.0e-138 495.7 609 47.0
C03p22480 Brassica napus HOM05D003539 ORTHO05D004111 1.9e-137 493.8 628 46.3
RcHm_v2.0_Chr2g0096801 Rosa chinensis HOM05D003539 ORTHO05D004111 1.9e-137 493.8 611 47.6
Aqoxy3G00897 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 5.6e-137 492.3 569 49.4
AT1G30590 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 2.1e-136 490.3 621 46.4
A04p26550 Brassica napus HOM05D003539 ORTHO05D004111 2.1e-136 490.3 631 45.6
FAN26G1725 Fragaria x ananassa HOM05D003539 ORTHO05D004111 2.8e-136 490.0 628 46.8
Aqoxy3G00418 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 3.6e-136 489.6 616 45.6
Cfa016374 Carpinus fangiana HOM05D003539 ORTHO05D004111 4.7e-136 489.2 578 49.7
Peaxi162Scf00677g00114 Petunia axillaris HOM05D003539 ORTHO05D004111 1.1e-135 488.0 613 46.8
BraA04t18159Z Brassica rapa HOM05D003539 ORTHO05D004111 3.1e-135 486.5 649 44.2
THA.LOC104798595 Tarenaya hassleriana HOM05D003539 ORTHO05D004111 8.9e-135 485.0 551 50.5
FAN28G2151 Fragaria x ananassa HOM05D003539 ORTHO05D004111 1.5e-134 484.2 628 46.3
FvH4_1g10010 Fragaria vesca HOM05D003539 ORTHO05D004111 3.4e-134 483.0 628 46.0
Hund28202 Selenicereus undatus HOM05D003539 ORTHO05D004111 2.2e-133 480.3 570 49.6
Hund28214 Selenicereus undatus HOM05D003539 ORTHO05D004111 2.2e-133 480.3 570 49.6
FAN19G1026 Fragaria x ananassa HOM05D003539 ORTHO05D004111 1.2e-131 474.6 639 45.2
AUR62006940 Chenopodium quinoa HOM05D003539 ORTHO05D004111 2.1e-131 473.8 621 45.2
FAN23G2523 Fragaria x ananassa HOM05D003539 ORTHO05D004111 1.0e-130 471.5 647 44.8
Os06g0688100 Oryza sativa ssp. japonica HOM05D003539 ORTHO05D004111 3.9e-130 469.5 618 44.5
CDE07G0217 Ceratophyllum demersum HOM05D003539 ORTHO05D004111 6.2e-128 462.2 541 47.9
Peaxi162Scf00344g01722 Petunia axillaris HOM05D003539 ORTHO05D004111 1.2e-126 458.0 641 43.4
Gohir.A02G120000 Gossypium hirsutum HOM05D003539 ORTHO05D004111 5.8e-126 455.7 436 58.3
unitig_699.g19839 Utricularia gibba HOM05D003539 ORTHO05D004111 5.4e-124 449.1 590 44.2
AUR62000583 Chenopodium quinoa HOM05D003539 ORTHO05D004111 3.5e-123 446.4 620 43.7
BolC4t22991H Brassica oleracea HOM05D003539 ORTHO05D004111 8.6e-122 441.8 613 44.2
AL4G35010 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 1.9e-121 440.7 608 44.1
BraA05t20035Z Brassica rapa HOM05D003539 ORTHO05D004111 1.9e-121 440.7 626 43.3
C04p14010 Brassica napus HOM05D003539 ORTHO05D004111 6.2e-120 435.6 603 44.4
SEGI_33601 Sequoiadendron giganteum HOM05D003539 ORTHO05D004111 2.4e-119 433.7 661 40.2
ATR0605G358 Amborella trichopoda HOM05D003539 ORTHO05D004111 3.1e-119 433.3 529 45.2
Carub.0004s2129 Capsella rubella HOM05D003539 ORTHO05D004111 5.4e-116 422.5 625 41.9
AT2G39240 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 1.3e-114 417.9 622 42.6
Zm00001eb226160 Zea mays HOM05D003539 ORTHO05D004111 7.3e-113 412.1 603 42.6
BcaC06g35972 Brassica carinata HOM05D003539 ORTHO05D004111 4.8e-112 409.5 604 42.5
C07p01640 Brassica napus HOM05D003539 ORTHO05D004111 2.4e-111 407.1 579 44.2
Peaxi162Scf00015g00939 Petunia axillaris HOM05D003539 ORTHO05D004111 6.6e-106 389.0 625 41.6
Mapoly0144s0013 Marchantia polymorpha HOM05D003539 ORTHO05D004111 6.2e-104 382.5 580 40.5
BcaC02g11551 Brassica carinata HOM05D003539 ORTHO05D004111 2.0e-102 377.5 628 40.6
Pp3c18_6750 Physcomitrium patens HOM05D003539 ORTHO05D004111 6.7e-98 362.5 629 36.6
Pp3c18_6751 Physcomitrium patens HOM05D003539 ORTHO05D004111 6.7e-98 362.5 629 36.6
Pp3c21_14490 Physcomitrium patens HOM05D003539 ORTHO05D004111 3.3e-97 360.1 604 38.6
SMO356G0429 Selaginella moellendorffii HOM05D003539 ORTHO05D004111 1.2e-91 341.7 632 36.4
C04p63970 Brassica napus HOM05D003539 ORTHO05D004111 4.8e-88 329.7 451 44.1
AL4G36550 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 7.6e-86 322.4 564 40.2
BcaC01g05764 Brassica carinata HOM05D003539 ORTHO05D004111 3.8e-85 320.1 418 43.8
C07p01430 Brassica napus HOM05D003539 ORTHO05D004111 1.1e-84 318.5 435 45.7
SalBow7G2073 Salvia bowleyana HOM05D003539 ORTHO05D004111 1.6e-83 314.7 357 49.9
Actinidia02872 Actinidia chinensis HOM05D003539 ORTHO05D004111 7.7e-78 295.8 309 52.8
Actinidia20762 Actinidia chinensis HOM05D003539 ORTHO05D004111 2.5e-76 290.8 291 54.6
AagrBONN_evm.TU.Sc2ySwM_368.2744 Anthoceros agrestis HOM05D003539 ORTHO05D004111 7.9e-75 285.8 553 35.1
HPP92_018392 Vanilla planifolia HOM05D003539 ORTHO05D004111 7.4e-73 279.3 378 43.4
FAN23G0637 Fragaria x ananassa HOM05D003539 ORTHO05D004111 1.7e-72 278.1 370 45.7
Actinidia20763 Actinidia chinensis HOM05D003539 ORTHO05D004111 1.5e-70 271.6 325 47.7
SalBow7G0297 Salvia bowleyana HOM05D003539 ORTHO05D004111 1.1e-63 248.8 300 46.3
DCAR_007550 Daucus carota HOM05D003539 ORTHO05D004111 8.5e-61 239.2 257 50.6
BolC4t27866H Brassica oleracea HOM05D003539 ORTHO05D004111 5.5e-60 236.5 273 50.2
BcaC06g35980 Brassica carinata HOM05D003539 ORTHO05D004111 1.4e-58 231.9 262 51.5
SHI13961 Sapria himalayana HOM05D003539 ORTHO05D004111 4.1e-55 220.3 347 39.8
Oeu000297.1 Olea europaea HOM05D003539 ORTHO05D004111 6.1e-51 206.5 240 48.3
Cre03.g207950 Chlamydomonas reinhardtii HOM05D003539 ORTHO05D004111 1.2e-49 202.2 616 28.4
arahy.Tifrunner.gnm1.ann1.PJLZ8M Arachis hypogaea HOM05D003539 ORTHO05D004111 1.1e-47 195.7 163 63.8
Ciclev10010838m.g Citrus clementina HOM05D003539 ORTHO05D004111 1.1e-44 185.7 176 54.0
BcaB05g23816 Brassica carinata HOM05D003539 ORTHO05D004111 3.0e-42 177.6 319 35.7
DCAR_007549 Daucus carota HOM05D003539 ORTHO05D004111 2.2e-40 171.4 180 50.0
GSVIVG01026439001 Vitis vinifera HOM05D003539 ORTHO05D004111 3.1e-39 167.5 148 58.8
PSO782G3432 Papaver somniferum HOM05D003539 ORTHO05D004111 1.7e-37 161.8 324 34.0
Gohir.A02G119802 Gossypium hirsutum HOM05D003539 ORTHO05D004111 2.1e-35 154.8 165 49.7
RcHm_v2.0_Chr2g0096841 Rosa chinensis HOM05D003539 ORTHO05D004111 9.8e-33 146.0 199 46.2
PRCOL_00004831 Prasinoderma coloniale HOM05D003539 ORTHO05D004111 6.4e-32 143.3 577 25.6
CBR_g23267 Chara braunii HOM05D000019 ORTHO05D000048 1.5e-28 132.1 188 42.0
CBR_g23271 Chara braunii HOM05D003539 ORTHO05D004111 4.0e-26 124.0 329 27.7
BcaC06g35981 Brassica carinata HOM05D003539 ORTHO05D004111 2.0e-25 121.7 193 38.3
Medtr8g085920 Medicago truncatula HOM05D003539 ORTHO05D004111 6.4e-24 116.7 73 78.1
Cfa022324 Carpinus fangiana HOM05D003539 ORTHO05D004111 3.5e-22 110.9 510 25.3
Medtr4g117730 Medicago truncatula HOM05D003539 ORTHO05D004111 5.0e-21 107.1 66 72.7
EL10Ac6g14558 Beta vulgaris HOM05D003539 ORTHO05D004111 3.3e-20 104.4 100 52.0
Cfa022001 Carpinus fangiana HOM05D003539 ORTHO05D004111 4.3e-20 104.0 117 52.1
HanXRQChr05g0145981 Helianthus annuus HOM05D003539 ORTHO05D004111 1.2e-19 102.4 138 42.8
Psat0s4462g0080 Pisum sativum HOM05D003539 ORTHO05D004111 1.6e-19 102.1 75 69.3
Cpa.g.sc7.213 Carica papaya HOM05D003539 ORTHO05D004111 2.8e-19 101.3 78 56.4
MCO15G598 Micromonas commoda HOM05D003539 ORTHO05D004111 2.3e-18 98.2 626 22.0
Cpa.g.sc7.212 Carica papaya HOM05D003539 ORTHO05D004111 4.4e-17 94.0 172 37.2
C03p59690 Brassica napus HOM05D003539 ORTHO05D004111 1.7e-16 92.0 71 63.4
BolC3t18231H Brassica oleracea HOM05D003539 ORTHO05D004111 1.7e-16 92.0 71 63.4
Potri.007G065101 Populus trichocarpa HOM05D003539 ORTHO05D004111 1.5e-09 68.9 160 36.2
RcHm_v2.0_Chr2g0096831 Rosa chinensis HOM05D003539 ORTHO05D004111 1.6e-06 58.9 103 35.0
GSVIVG01026438001 Vitis vinifera HOM05D003539 ORTHO05D004111 2.7e-06 58.2 51 56.9


User provided reference genes

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