Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_21528_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 5.0e-105 384.4 188 100.0
Medtr3g112090 Medicago truncatula HOM05D004362 ORTHO05D005650 3.1e-99 365.2 188 93.1
TPR.G3221 Trifolium pratense HOM05D004362 ORTHO05D005650 2.0e-98 362.5 188 91.5
Ca_15496_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 4.5e-98 361.3 188 92.0
Phvul.003G104500 Phaseolus vulgaris HOM05D004362 ORTHO05D005650 4.5e-98 361.3 188 92.0
VMungo1383G0988 Vigna mungo HOM05D004362 ORTHO05D005650 4.5e-98 361.3 188 92.0
Glyma.05G031500 Glycine max HOM05D004362 ORTHO05D005650 2.5e-96 355.5 188 90.4
Glyma.17G095400 Glycine max HOM05D004362 ORTHO05D005650 2.5e-96 355.5 188 90.4
Lj6g0015098 Lotus japonicus HOM05D004362 ORTHO05D005650 3.2e-96 355.1 188 89.9
Psat7g055160 Pisum sativum HOM05D004362 ORTHO05D005650 2.1e-95 352.4 188 90.4
TPR.G12330 Trifolium pratense HOM05D004362 ORTHO05D005650 3.6e-95 351.7 188 88.8
arahy.Tifrunner.gnm1.ann1.F4LE79 Arachis hypogaea HOM05D004362 ORTHO05D005650 1.8e-94 349.4 188 88.8
Lalb_Chr07g0177681 Lupinus albus HOM05D004362 ORTHO05D005650 5.1e-94 347.8 188 86.7
Cpa.g.sc16.164 Carica papaya HOM05D004362 ORTHO05D005650 2.2e-92 342.4 188 85.6
MD03G1177300 Malus domestica HOM05D004362 ORTHO05D005650 2.0e-90 335.9 188 84.0
CANSAT11G1206 Cannabis sativa HOM05D004362 ORTHO05D005650 2.6e-90 335.5 188 81.9
CANSAT56G3245 Cannabis sativa HOM05D004362 ORTHO05D005650 2.6e-90 335.5 188 81.9
FvH4_4g00380 Fragaria vesca HOM05D004362 ORTHO05D005650 4.5e-90 334.7 188 83.0
FAN22G1477 Fragaria x ananassa HOM05D004362 ORTHO05D005650 4.5e-90 334.7 188 83.0
Ciclev10005994m.g Citrus clementina HOM05D004362 ORTHO05D005650 7.7e-90 334.0 188 81.9
Prupe.3G093900 Prunus persica HOM05D004362 ORTHO05D005650 7.7e-90 334.0 188 83.5
CiPaw.01G149400 Carya illinoinensis HOM05D004362 ORTHO05D005650 1.0e-89 333.6 188 81.9
FvH4_6g25030 Fragaria vesca HOM05D004362 ORTHO05D005650 1.0e-89 333.6 188 82.4
FAN17G1564 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.0e-89 333.6 188 82.4
QL06p008685 Quercus lobata HOM05D004362 ORTHO05D005650 1.3e-89 333.2 187 82.9
MD17G1218500 Malus domestica HOM05D004362 ORTHO05D005650 1.7e-89 332.8 188 83.5
RcHm_v2.0_Chr7g0221961 Rosa chinensis HOM05D004362 ORTHO05D005650 1.7e-89 332.8 188 81.9
THA.LOC104820258 Tarenaya hassleriana HOM05D004362 ORTHO05D005650 2.2e-89 332.4 188 82.4
RcHm_v2.0_Chr1g0332291 Rosa chinensis HOM05D004362 ORTHO05D005650 5.0e-89 331.3 188 81.4
TWI53G0131 Tripterygium wilfordii HOM05D004362 ORTHO05D005650 8.5e-89 330.5 188 80.9
A03p49320 Brassica napus HOM05D004362 ORTHO05D005650 1.1e-88 330.1 188 81.9
BraA03t14033Z Brassica rapa HOM05D004362 ORTHO05D005650 1.1e-88 330.1 188 81.9
CsaV3_3G014560 Cucumis sativus L. HOM05D004362 ORTHO05D005650 1.1e-88 330.1 188 81.9
Thecc.04G283400 Theobroma cacao HOM05D004362 ORTHO05D005650 1.9e-88 329.3 185 81.1
BcaC06g32960 Brassica carinata HOM05D004362 ORTHO05D005650 3.2e-88 328.6 188 81.4
C07p47390 Brassica napus HOM05D004362 ORTHO05D005650 3.2e-88 328.6 188 81.4
BolC7t45266H Brassica oleracea HOM05D004362 ORTHO05D005650 3.2e-88 328.6 188 81.4
BcaC06g32963 Brassica carinata HOM05D004362 ORTHO05D005650 4.2e-88 328.2 188 81.4
Sed0020990 Sechium edule HOM05D004362 ORTHO05D005650 5.5e-88 327.8 188 80.9
Duzib052G0564 Durio zibethinus HOM05D004362 ORTHO05D005650 7.2e-88 327.4 185 80.0
MELO3C006657.2 Cucumis melo HOM05D004362 ORTHO05D005650 9.4e-88 327.0 188 81.4
Atru.chr4.2815 Acer truncatum HOM05D004362 ORTHO05D005650 1.2e-87 326.6 188 80.3
Thhalv10026330m.g Eutrema salsugineum HOM05D004362 ORTHO05D005650 2.1e-87 325.9 188 81.4
CARHR290260 Cardamine hirsuta HOM05D004362 ORTHO05D005650 2.7e-87 325.5 188 80.9
Manes.03G194200 Manihot esculenta HOM05D004362 ORTHO05D005650 2.7e-87 325.5 188 80.9
TAR633G1411 Trochodendron aralioides HOM05D004362 ORTHO05D005650 2.7e-87 325.5 188 80.3
A01p21760 Brassica napus HOM05D004362 ORTHO05D005650 3.6e-87 325.1 188 80.9
BraA01t02085Z Brassica rapa HOM05D004362 ORTHO05D005650 3.6e-87 325.1 188 80.9
Duzib212G1021 Durio zibethinus HOM05D004362 ORTHO05D005650 3.6e-87 325.1 185 79.5
Sp7g14130 Schrenkiella parvula HOM05D004362 ORTHO05D005650 3.6e-87 325.1 188 80.9
Aa31LG10G6340 Aethionema arabicum HOM05D004362 ORTHO05D005650 4.7e-87 324.7 188 80.3
BcaC07g37931 Brassica carinata HOM05D004362 ORTHO05D005650 6.1e-87 324.3 188 80.3
A08p11960 Brassica napus HOM05D004362 ORTHO05D005650 6.1e-87 324.3 188 80.3
BraA08t33187Z Brassica rapa HOM05D004362 ORTHO05D005650 6.1e-87 324.3 188 80.3
Rhsim04G0220600 Rhododendron simsii HOM05D004362 ORTHO05D005650 6.1e-87 324.3 188 81.9
Sed0024198 Sechium edule HOM05D004362 ORTHO05D005650 6.1e-87 324.3 188 80.9
TAR362G1261 Trochodendron aralioides HOM05D004362 ORTHO05D005650 6.1e-87 324.3 188 79.3
BolC8t48316H Brassica oleracea HOM05D004362 ORTHO05D005650 7.9e-87 323.9 188 79.8
Cfa015376 Carpinus fangiana HOM05D004362 ORTHO05D005650 7.9e-87 323.9 188 80.9
Haze_01219 Corylus avellana HOM05D004362 ORTHO05D005650 7.9e-87 323.9 188 80.9
AL7G39540 Arabidopsis lyrata HOM05D004362 ORTHO05D005650 1.0e-86 323.6 188 80.9
AT4G15770 Arabidopsis thaliana HOM05D004362 ORTHO05D005650 1.0e-86 323.6 188 80.9
vmacro08137 Vaccinium macrocarpon HOM05D004362 ORTHO05D005650 1.0e-86 323.6 188 81.9
BolC1t02658H Brassica oleracea HOM05D004362 ORTHO05D005650 1.4e-86 323.2 188 80.3
Nn8g40841 Nelumbo nucifera HOM05D004362 ORTHO05D005650 1.4e-86 323.2 188 80.9
Carub.0007s2590 Capsella rubella HOM05D004362 ORTHO05D005650 1.8e-86 322.8 188 80.3
Gohir.D01G023472 Gossypium hirsutum HOM05D004362 ORTHO05D005650 3.9e-86 321.6 185 78.9
Gorai.002G028000 Gossypium raimondii HOM05D004362 ORTHO05D005650 3.9e-86 321.6 185 78.9
PSO541G6165 Papaver somniferum HOM05D004362 ORTHO05D005650 3.9e-86 321.6 188 80.3
Aqoxy2G03013 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 5.2e-86 321.2 188 80.3
PSO063G3233 Papaver somniferum HOM05D004362 ORTHO05D005650 5.2e-86 321.2 188 79.8
PSO170G0314 Papaver somniferum HOM05D004362 ORTHO05D005650 5.2e-86 321.2 188 79.8
PSO675G6259 Papaver somniferum HOM05D004362 ORTHO05D005650 5.2e-86 321.2 188 79.8
CSS0031921 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 6.7e-86 320.9 188 80.9
CSS0044915 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 6.7e-86 320.9 188 80.9
Hma1.2p1_0698F.1_g205210 Hydrangea macrophylla HOM05D004362 ORTHO05D005650 6.7e-86 320.9 188 79.8
Actinidia01468 Actinidia chinensis HOM05D004362 ORTHO05D005650 8.8e-86 320.5 188 80.3
BcaC09g50269 Brassica carinata HOM05D004362 ORTHO05D005650 1.1e-85 320.1 190 80.0
C01p27110 Brassica napus HOM05D004362 ORTHO05D005650 1.1e-85 320.1 190 80.0
arahy.Tifrunner.gnm1.ann1.U4RKM8 Arachis hypogaea HOM05D004362 ORTHO05D005650 3.3e-85 318.5 169 89.3
Gohir.A01G031201 Gossypium hirsutum HOM05D004362 ORTHO05D005650 3.3e-85 318.5 185 78.4
FAN12G1395 Fragaria x ananassa HOM05D002675 ORTHO05D003322 5.7e-85 317.8 179 82.1
Manes.15G013200 Manihot esculenta HOM05D004362 ORTHO05D005650 9.7e-85 317.0 188 79.3
Cc00_g10540 Coffea canephora HOM05D004362 ORTHO05D005650 2.8e-84 315.5 188 79.8
Nn4g25890 Nelumbo nucifera HOM05D004362 ORTHO05D005650 2.8e-84 315.5 188 79.8
Aqoxy5G03978 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 1.1e-83 313.5 188 78.7
ATR0706G220 Amborella trichopoda HOM05D004362 ORTHO05D005650 1.4e-83 313.2 188 77.7
Lj6P674T13 Lonicera japonica HOM05D004362 ORTHO05D005650 1.8e-83 312.8 188 77.7
Dinv29769 Davidia involucrata HOM05D004362 ORTHO05D005650 5.3e-83 311.2 180 80.6
CAN.G134.195 Capsicum annuum HOM05D004362 ORTHO05D005650 1.2e-82 310.1 188 78.7
DCAR_003777 Daucus carota HOM05D004362 ORTHO05D005650 3.5e-82 308.5 188 76.6
Peaxi162Scf00399g00066 Petunia axillaris HOM05D004362 ORTHO05D005650 3.5e-82 308.5 188 79.3
Lsat_1_v5_gn_7_66041 Lactuca sativa HOM05D004362 ORTHO05D005650 7.7e-82 307.4 188 76.6
HanXRQChr15g0467261 Helianthus annuus HOM05D004362 ORTHO05D005650 1.0e-81 307.0 188 76.6
Eucgr.L03020 Eucalyptus grandis HOM05D004362 ORTHO05D005650 1.7e-81 306.2 188 75.5
HanXRQChr05g0151141 Helianthus annuus HOM05D004362 ORTHO05D005650 1.7e-81 306.2 188 76.6
Nitab4.5_0000250g0130 Nicotiana tabacum HOM05D004362 ORTHO05D005650 1.7e-81 306.2 188 77.7
Sopen01g041670 Solanum pennellii HOM05D004362 ORTHO05D005650 2.2e-81 305.8 188 77.7
Solyc01g098100.2 Solanum lycopersicum HOM05D004362 ORTHO05D005650 2.9e-81 305.4 188 77.7
Sopen00g012890 Solanum pennellii HOM05D004362 ORTHO05D005650 2.9e-81 305.4 188 77.7
PGSC0003DMG400022496 Solanum tuberosum HOM05D004362 ORTHO05D005650 3.8e-81 305.1 188 77.1
Potri.010G024400 Populus trichocarpa HOM05D004362 ORTHO05D005650 5.0e-81 304.7 188 76.6
Potri.008G209600 Populus trichocarpa HOM05D004362 ORTHO05D005650 8.5e-81 303.9 188 77.7
Nitab4.5_0002393g0040 Nicotiana tabacum HOM05D004362 ORTHO05D005650 1.5e-80 303.1 188 76.1
CDE05G0863 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 1.9e-80 302.8 188 75.0
Sabra10G0014700 Salix brachista HOM05D004362 ORTHO05D005650 1.9e-80 302.8 188 75.5
CDE05G1737 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 3.2e-80 302.0 188 75.0
ECA246G2248 Erigeron canadensis HOM05D004362 ORTHO05D005650 4.2e-80 301.6 188 75.0
PGR031G1479 Punica granatum HOM05D004362 ORTHO05D005650 4.2e-80 301.6 188 73.9
BcaB04g18325 Brassica carinata HOM05D004362 ORTHO05D005650 6.1e-79 297.7 188 76.1
FAN02G1421 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.0e-78 297.0 174 79.9
Lalb_Chr13g0303661 Lupinus albus HOM05D004362 ORTHO05D005650 1.8e-78 296.2 188 77.1
Oeu027731.1 Olea europaea HOM05D004362 ORTHO05D005650 1.8e-78 296.2 189 75.7
SEGI_37753 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 1.8e-78 296.2 188 72.3
CDE05G2612 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 1.5e-77 293.1 180 75.0
SHI00272 Sapria himalayana HOM05D004362 ORTHO05D005650 4.4e-77 291.6 188 72.3
SGA_v2.0_scaffold166G38354 Striga asiatica HOM05D004362 ORTHO05D005650 5.7e-77 291.2 189 75.1
Ah.05g167830 Amaranthus hybridus HOM05D004362 ORTHO05D005650 7.5e-77 290.8 188 72.3
MSTRG.3927 Avicennia marina HOM05D004362 ORTHO05D005650 1.7e-76 289.7 189 74.6
unitig_88.g27714 Utricularia gibba HOM05D004362 ORTHO05D005650 1.1e-75 287.0 189 74.1
HPP92_025218 Vanilla planifolia HOM05D004362 ORTHO05D005650 1.1e-75 287.0 188 71.8
AUR62010283 Chenopodium quinoa HOM05D004362 ORTHO05D005650 1.4e-75 286.6 190 71.6
Sc19g0005120 Simmondsia chinensis HOM05D004362 ORTHO05D005650 1.8e-75 286.2 188 72.3
SGA_v2.0_scaffold67G22647 Striga asiatica HOM05D004362 ORTHO05D005650 1.8e-75 286.2 188 73.4
Migut.G00171 Erythranthe guttata HOM05D004362 ORTHO05D005650 3.1e-75 285.4 189 74.1
SalBow2G1272 Salvia bowleyana HOM05D004362 ORTHO05D005650 7.0e-75 284.3 189 73.5
EL10Ac1g01907 Beta vulgaris HOM05D004362 ORTHO05D005650 4.5e-74 281.6 190 70.0
Psat0s12239g0040 Pisum sativum HOM05D004362 ORTHO05D005650 2.2e-73 279.3 182 76.9
AagrBONN_evm.TU.Sc2ySwM_228.5155 Anthoceros agrestis HOM05D004362 ORTHO05D005650 1.0e-70 270.4 188 66.0
Pp3c15_15310 Physcomitrium patens HOM05D004362 ORTHO05D005650 2.3e-70 269.2 188 68.1
SMO361G0267 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 8.8e-70 267.3 188 68.1
SMO361G0579 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 8.8e-70 267.3 188 68.1
Dinv44388 Davidia involucrata HOM05D004362 ORTHO05D005650 1.2e-69 266.9 188 70.7
Mapoly0063s0083 Marchantia polymorpha HOM05D004362 ORTHO05D005650 1.5e-69 266.5 188 66.5
Zm00001eb257450 Zea mays HOM05D004362 ORTHO05D005650 2.0e-69 266.2 187 66.8
AUR62039106 Chenopodium quinoa HOM05D004362 ORTHO05D005650 2.6e-69 265.8 179 69.8
CBR_g101 Chara braunii HOM05D004362 ORTHO05D005650 3.4e-69 265.4 189 66.1
GSVIVG01038238001 Vitis vinifera HOM05D004362 ORTHO05D005650 1.3e-68 263.5 188 69.7
Os07g0670600 Oryza sativa ssp. japonica HOM05D004362 ORTHO05D005650 1.7e-68 263.1 187 66.8
EL10Ac1g01881 Beta vulgaris HOM05D004362 ORTHO05D005650 4.8e-68 261.5 179 68.7
BcaC06g33449 Brassica carinata HOM05D004362 ORTHO05D005650 1.1e-67 260.4 177 71.2
MCO05G615 Micromonas commoda HOM05D004362 ORTHO05D005650 5.4e-67 258.1 187 65.8
GSVIVG01017749001 Vitis vinifera HOM05D004362 ORTHO05D005650 7.0e-67 257.7 188 68.6
Cre12.g528900 Chlamydomonas reinhardtii HOM05D004362 ORTHO05D005650 3.6e-63 245.4 188 60.1
PRCOL_00000387 Prasinoderma coloniale HOM05D004362 ORTHO05D005650 4.1e-59 231.9 177 62.1
Prupe.7G009000 Prunus persica HOM05D004362 ORTHO05D005650 1.0e-57 227.3 165 69.7
Psat5g016440 Pisum sativum HOM05D004362 ORTHO05D005650 1.5e-53 213.4 121 85.1
SEGI_14868 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 1.3e-52 210.3 188 57.4
Psat7g055200 Pisum sativum HOM05D004362 ORTHO05D005650 5.9e-50 201.4 109 89.0
Haze_26515 Corylus avellana HOM05D004362 ORTHO05D005650 3.6e-47 192.2 187 49.7
Oeu027660.1 Olea europaea HOM05D004362 ORTHO05D005650 2.7e-42 176.0 115 74.8
FAN05G2426 Fragaria x ananassa HOM05D004362 ORTHO05D005650 6.6e-41 171.4 173 53.8
FAN14G4293 Fragaria x ananassa HOM05D004362 ORTHO05D005650 6.6e-41 171.4 188 50.0
Eucgr.C01884 Eucalyptus grandis HOM05D004362 ORTHO05D191638 2.6e-37 159.5 123 65.9
Actinidia40262 Actinidia chinensis HOM05D004362 ORTHO05D005650 7.5e-37 157.9 85 88.2
SEGI_29823 Sequoiadendron giganteum HOM05D004362 ORTHO05D000001 9.2e-35 151.0 127 55.9
TPR.G35112 Trifolium pratense HOM05D004362 ORTHO05D005650 3.0e-33 146.0 78 87.2
Psat4g036040 Pisum sativum HOM05D004362 ORTHO05D327968 9.2e-27 124.4 64 90.6
BcaC02g09747 Brassica carinata HOM05D004362 ORTHO05D094801 1.9e-24 116.7 92 65.2
Prupe.7G008800 Prunus persica HOM05D004362 ORTHO05D334194 3.5e-10 69.3 35 88.6


User provided reference genes

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