Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_21404_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 1.1e-90 336.7 180 100.0
Ca_21419_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 1.1e-90 336.7 180 100.0
Glyma.17G037200 Glycine max HOM05D004222 ORTHO05D004982 4.8e-81 304.7 180 85.6
Glyma.07G236200 Glycine max HOM05D004222 ORTHO05D004982 8.1e-81 303.9 180 86.7
Lalb_Chr13g0298711 Lupinus albus HOM05D004222 ORTHO05D004982 1.8e-80 302.8 180 85.6
Lj4g0027352 Lotus japonicus HOM05D004222 ORTHO05D004982 2.0e-79 299.3 179 85.5
Phvul.003G118200 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 2.6e-79 298.9 180 84.4
Glyma.02G277500 Glycine max HOM05D004222 ORTHO05D004982 9.3e-77 290.4 181 80.1
arahy.Tifrunner.gnm1.ann1.J7IGQN Arachis hypogaea HOM05D004222 ORTHO05D004982 2.7e-76 288.9 179 80.4
arahy.Tifrunner.gnm1.ann1.M5IJ04 Arachis hypogaea HOM05D004222 ORTHO05D004982 2.7e-76 288.9 179 80.4
Medtr3g015130 Medicago truncatula HOM05D004222 ORTHO05D004982 5.1e-75 284.6 180 80.0
Medtr4g123000 Medicago truncatula HOM05D004222 ORTHO05D004982 5.7e-74 281.2 180 78.9
Psat0s1953g0320 Pisum sativum HOM05D004222 ORTHO05D004982 1.7e-70 269.6 184 77.7
TPR.G18581 Trifolium pratense HOM05D004222 ORTHO05D004982 3.8e-70 268.5 181 77.9
VMungo0647G2371 Vigna mungo HOM05D004222 ORTHO05D004982 6.5e-70 267.7 180 77.8
VMungo1215G2100 Vigna mungo HOM05D004222 ORTHO05D004982 4.2e-69 265.0 255 58.8
Potri.001G168300 Populus trichocarpa HOM05D004222 ORTHO05D004982 5.5e-69 264.6 169 78.7
Phvul.008G203400 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 9.3e-69 263.8 181 77.3
Rhsim08G0239600 Rhododendron simsii HOM05D004222 ORTHO05D004982 9.3e-69 263.8 174 75.3
Sabra01G0142300 Salix brachista HOM05D004222 ORTHO05D004982 9.3e-69 263.8 169 78.7
Rhsim01G0228800 Rhododendron simsii HOM05D004222 ORTHO05D004982 6.1e-68 261.2 174 75.3
Duzib235G1272 Durio zibethinus HOM05D004222 ORTHO05D004982 1.0e-67 260.4 178 74.2
Haze_16054 Corylus avellana HOM05D004222 ORTHO05D004982 1.8e-67 259.6 179 74.9
Manes.11G019600 Manihot esculenta HOM05D004222 ORTHO05D004982 1.8e-67 259.6 179 75.4
Manes.04G145400 Manihot esculenta HOM05D004222 ORTHO05D004982 2.3e-67 259.2 179 74.3
ClCG09G000990 Citrullus lanatus HOM05D004222 ORTHO05D004982 6.7e-67 257.7 174 76.4
Dinv37865 Davidia involucrata HOM05D004222 ORTHO05D004982 1.1e-66 256.9 164 76.2
MELO3C024352.2 Cucumis melo HOM05D004222 ORTHO05D004982 2.5e-66 255.8 180 75.6
FAN09G4904 Fragaria x ananassa HOM05D004222 ORTHO05D004982 2.5e-66 255.8 172 76.7
Actinidia21792 Actinidia chinensis HOM05D004222 ORTHO05D004982 3.3e-66 255.4 173 74.0
Dinv15742 Davidia involucrata HOM05D004222 ORTHO05D004982 3.3e-66 255.4 175 74.9
CsaV3_7G034430 Cucumis sativus L. HOM05D004222 ORTHO05D004982 4.3e-66 255.0 180 75.0
Gorai.011G059100 Gossypium raimondii HOM05D004222 ORTHO05D004982 4.3e-66 255.0 178 73.0
RcHm_v2.0_Chr2g0145741 Rosa chinensis HOM05D004222 ORTHO05D004982 4.3e-66 255.0 179 73.7
QL05p004213 Quercus lobata HOM05D004222 ORTHO05D004982 7.4e-66 254.2 178 72.5
CiPaw.01G218100 Carya illinoinensis HOM05D004222 ORTHO05D004982 9.7e-66 253.8 179 73.2
Cc02_g29210 Coffea canephora HOM05D004222 ORTHO05D004982 9.7e-66 253.8 180 73.9
FvH4_6g34870 Fragaria vesca HOM05D004222 ORTHO05D004982 9.7e-66 253.8 172 76.2
FAN14G1002 Fragaria x ananassa HOM05D004222 ORTHO05D004982 9.7e-66 253.8 172 76.2
Cc04_g01280 Coffea canephora HOM05D004222 ORTHO05D004982 1.6e-65 253.1 169 76.9
CSS0031925 Camellia sinensis var. sinensis HOM05D004222 ORTHO05D004982 2.2e-65 252.7 175 75.4
COL.COLO4_30749 Corchorus olitorius HOM05D004222 ORTHO05D004982 2.2e-65 252.7 178 73.0
FAN02G1508 Fragaria x ananassa HOM05D004222 ORTHO05D004982 2.2e-65 252.7 172 76.2
Gohir.A10G053600 Gossypium hirsutum HOM05D004222 ORTHO05D004982 2.2e-65 252.7 178 72.5
Gohir.D10G055400 Gossypium hirsutum HOM05D004222 ORTHO05D004982 3.7e-65 251.9 178 72.5
PGR031G1684 Punica granatum HOM05D004222 ORTHO05D004982 3.7e-65 251.9 178 71.9
vmacro16353 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 4.8e-65 251.5 174 73.0
TWI31G0208 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 6.3e-65 251.1 182 70.9
DCAR_023344 Daucus carota HOM05D004222 ORTHO05D004982 8.2e-65 250.8 173 72.8
TAR383G0284 Trochodendron aralioides HOM05D004222 ORTHO05D004982 8.2e-65 250.8 176 73.3
vmacro15039 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 8.2e-65 250.8 174 73.6
DCAR_002631 Daucus carota HOM05D004222 ORTHO05D004982 1.8e-64 249.6 169 73.4
Thecc.06G121100 Theobroma cacao HOM05D004222 ORTHO05D004982 1.8e-64 249.6 178 73.6
Eucgr.G03389 Eucalyptus grandis HOM05D004222 ORTHO05D004982 2.4e-64 249.2 178 70.8
GSVIVG01016750001 Vitis vinifera HOM05D004222 ORTHO05D004982 2.4e-64 249.2 173 74.0
Lj9A532G68 Lonicera japonica HOM05D004222 ORTHO05D004982 6.9e-64 247.7 174 73.0
Lj9C524T6 Lonicera japonica HOM05D004222 ORTHO05D004982 6.9e-64 247.7 174 73.0
Sed0002362 Sechium edule HOM05D004222 ORTHO05D004982 9.1e-64 247.3 177 72.9
Eucgr.H02488 Eucalyptus grandis HOM05D004222 ORTHO05D004982 1.2e-63 246.9 178 70.8
Cfa003517 Carpinus fangiana HOM05D004222 ORTHO05D004982 1.5e-63 246.5 156 78.8
Hma1.2p1_0074F.1_g038830 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 2.0e-63 246.1 164 73.2
Hma1.2p1_3000F.1_g331525 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 2.0e-63 246.1 164 73.2
CiPaw.02G135300 Carya illinoinensis HOM05D004222 ORTHO05D004982 2.6e-63 245.7 178 71.9
Sp1g40590 Schrenkiella parvula HOM05D004222 ORTHO05D004982 4.5e-63 245.0 179 72.6
Atru.chr1.3997 Acer truncatum HOM05D004222 ORTHO05D004982 7.7e-63 244.2 178 69.1
Lsat_1_v5_gn_4_74980 Lactuca sativa HOM05D004222 ORTHO05D004982 1.3e-62 243.4 180 72.2
MD09G1181700 Malus domestica HOM05D004222 ORTHO05D004982 1.7e-62 243.0 178 70.8
BolC3t21520H Brassica oleracea HOM05D004222 ORTHO05D004982 2.2e-62 242.7 171 72.5
A08p01190 Brassica napus HOM05D004222 ORTHO05D004982 2.9e-62 242.3 171 72.5
BraA08t32170Z Brassica rapa HOM05D004222 ORTHO05D004982 2.9e-62 242.3 171 72.5
ECA232G1089 Erigeron canadensis HOM05D004222 ORTHO05D004982 2.9e-62 242.3 178 71.3
BcaC01g01437 Brassica carinata HOM05D004222 ORTHO05D004982 6.5e-62 241.1 171 71.9
C03p92020 Brassica napus HOM05D004222 ORTHO05D004982 6.5e-62 241.1 171 71.9
Sc16g0009040 Simmondsia chinensis HOM05D004222 ORTHO05D004982 6.5e-62 241.1 174 70.7
TWI75G1350 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 1.1e-61 240.4 169 71.0
Nitab4.5_0006737g0050 Nicotiana tabacum HOM05D004222 ORTHO05D004982 1.9e-61 239.6 169 71.6
Prupe.3G039800 Prunus persica HOM05D004222 ORTHO05D004982 1.9e-61 239.6 178 70.2
Ciclev10032895m.g Citrus clementina HOM05D004222 ORTHO05D004982 2.5e-61 239.2 178 69.7
Thhalv10012402m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 2.5e-61 239.2 178 73.0
BcaB04g17022 Brassica carinata HOM05D004222 ORTHO05D004982 3.2e-61 238.8 171 71.9
Actinidia32191 Actinidia chinensis HOM05D004222 ORTHO05D004982 5.5e-61 238.0 174 69.5
AUR62006751 Chenopodium quinoa HOM05D004222 ORTHO05D004982 7.2e-61 237.7 179 69.8
AL1G62860 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 1.2e-60 236.9 183 70.5
Ciclev10026608m.g Citrus clementina HOM05D004222 ORTHO05D004982 1.2e-60 236.9 179 69.3
Nn2g10347 Nelumbo nucifera HOM05D004222 ORTHO05D004982 1.6e-60 236.5 156 76.9
Nitab4.5_0003780g0070 Nicotiana tabacum HOM05D004222 ORTHO05D004982 1.6e-60 236.5 169 71.0
SGA_v2.0_scaffold4G02066 Striga asiatica HOM05D004222 ORTHO05D004982 1.6e-60 236.5 178 68.5
Solyc04g010090.3 Solanum lycopersicum HOM05D004222 ORTHO05D004982 2.1e-60 236.1 169 71.0
Sopen04g005230 Solanum pennellii HOM05D004222 ORTHO05D004982 2.1e-60 236.1 169 71.0
AUR62000395 Chenopodium quinoa HOM05D004222 ORTHO05D004982 3.6e-60 235.3 179 68.7
PGSC0003DMG400011493 Solanum tuberosum HOM05D004222 ORTHO05D004982 7.9e-60 234.2 169 70.4
PSO135G0791 Papaver somniferum HOM05D004222 ORTHO05D004982 1.4e-59 233.4 177 68.9
TAR626G0656 Trochodendron aralioides HOM05D004222 ORTHO05D004982 1.4e-59 233.4 175 69.7
CAN.G786.39 Capsicum annuum HOM05D004222 ORTHO05D004982 1.8e-59 233.0 170 71.8
PSO724G0032 Papaver somniferum HOM05D004222 ORTHO05D004982 1.8e-59 233.0 178 68.0
Migut.I01080 Erythranthe guttata HOM05D004222 ORTHO05D004982 3.9e-59 231.9 177 66.7
ECA232G2519 Erigeron canadensis HOM05D004222 ORTHO05D004982 5.1e-59 231.5 180 69.4
Oeu026248.1 Olea europaea HOM05D004222 ORTHO05D004982 5.1e-59 231.5 174 69.0
AL1G63010 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 8.8e-59 230.7 184 69.0
AT1G54140 Arabidopsis thaliana HOM05D004222 ORTHO05D004982 8.8e-59 230.7 175 74.9
EL10Ac4g09456 Beta vulgaris HOM05D004222 ORTHO05D004982 1.1e-58 230.3 179 66.5
BcaC08g44165 Brassica carinata HOM05D004222 ORTHO05D004982 3.3e-58 228.8 170 72.9
Oeu043649.1 Olea europaea HOM05D004222 ORTHO05D004982 4.4e-58 228.4 136 80.1
PGR042G1688 Punica granatum HOM05D004222 ORTHO05D004982 5.7e-58 228.0 153 71.9
SalBow6G6030 Salvia bowleyana HOM05D004222 ORTHO05D004982 7.4e-58 227.6 171 69.0
THA.LOC104810368 Tarenaya hassleriana HOM05D004222 ORTHO05D004982 1.3e-57 226.9 171 70.2
SGA_v2.0_scaffold68G22854 Striga asiatica HOM05D004222 ORTHO05D004982 2.2e-57 226.1 178 69.1
unitig_699.g19654 Utricularia gibba HOM05D004222 ORTHO05D004982 2.2e-57 226.1 183 65.6
Carub.0001s4338 Capsella rubella HOM05D004222 ORTHO05D004982 2.8e-57 225.7 123 89.4
CARHR044490 Cardamine hirsuta HOM05D004222 ORTHO05D004982 3.7e-57 225.3 172 70.3
Aqoxy5G01362 Aquilegia oxysepala HOM05D004222 ORTHO05D004982 1.4e-56 223.4 176 70.5
BolC6t36754H Brassica oleracea HOM05D004222 ORTHO05D004982 1.8e-56 223.0 170 71.8
Ah.04g158670 Amaranthus hybridus HOM05D004222 ORTHO05D004982 3.1e-56 222.2 178 64.0
Peaxi162Scf00528g00226 Petunia axillaris HOM05D004222 ORTHO05D004982 9.1e-56 220.7 128 80.5
ATR0598G103 Amborella trichopoda HOM05D004222 ORTHO05D004982 1.2e-55 220.3 173 64.7
MSTRG.9521 Avicennia marina HOM05D004222 ORTHO05D004982 1.2e-55 220.3 145 75.9
C06p15670 Brassica napus HOM05D004222 ORTHO05D004982 1.5e-55 219.9 144 75.7
CANSAT64G2454 Cannabis sativa HOM05D004222 ORTHO05D004982 2.6e-55 219.2 141 78.0
CDE08G1040 Ceratophyllum demersum HOM05D004222 ORTHO05D004982 3.4e-55 218.8 173 65.3
BcaB02g10859 Brassica carinata HOM05D004222 ORTHO05D004982 1.3e-54 216.9 172 67.4
SEGI_03819 Sequoiadendron giganteum HOM05D004222 ORTHO05D004982 6.5e-54 214.5 175 62.9
SHI11210 Sapria himalayana HOM05D004222 ORTHO05D004982 8.5e-54 214.2 178 62.9
Aa31LG10G1270 Aethionema arabicum HOM05D004222 ORTHO05D004982 5.5e-53 211.5 135 77.0
SalBow6G2027 Salvia bowleyana HOM05D004222 ORTHO05D004982 5.5e-53 211.5 136 73.5
SalBow6G3336 Salvia bowleyana HOM05D004222 ORTHO05D004982 1.6e-52 209.9 136 72.8
Ah.06g195960 Amaranthus hybridus HOM05D004222 ORTHO05D004982 7.9e-52 207.6 173 61.8
HPP92_016607 Vanilla planifolia HOM05D004222 ORTHO05D004982 5.2e-51 204.9 188 61.7
MBI05_g15473_MAGBIO Magnolia biondii HOM05D004222 ORTHO05D004982 1.1e-50 203.8 142 70.4
HanXRQChr09g0262591 Helianthus annuus HOM05D004222 ORTHO05D004982 1.5e-50 203.4 157 70.7
Dinv10670 Davidia involucrata HOM05D004222 ORTHO05D004982 7.4e-50 201.1 133 75.9
Atru.chr1.2991 Acer truncatum HOM05D004222 ORTHO05D004982 2.6e-47 192.6 123 76.4
Os03g0408500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 5.9e-47 191.4 174 59.8
SMO340G0157 Selaginella moellendorffii HOM05D004222 ORTHO05D004982 7.2e-45 184.5 141 62.4
CBR_g52315 Chara braunii HOM05D004222 ORTHO05D004982 1.2e-44 183.7 145 64.8
Pp3c19_19770 Physcomitrium patens HOM05D004222 ORTHO05D004982 1.0e-43 180.6 143 62.2
Mapoly0152s0015 Marchantia polymorpha HOM05D004222 ORTHO05D004982 2.3e-43 179.5 122 69.7
Zm00001eb392970 Zea mays HOM05D004222 ORTHO05D004982 3.0e-43 179.1 147 64.6
Zm00001eb019630 Zea mays HOM05D004222 ORTHO05D004982 1.3e-41 173.7 179 55.9
AagrBONN_evm.TU.Sc2ySwM_117.372 Anthoceros agrestis HOM05D004222 ORTHO05D004982 1.2e-39 167.2 142 58.5
TPR.G12685 Trifolium pratense HOM05D004222 ORTHO05D004982 2.3e-35 152.9 95 80.0
Eucgr.J01267 Eucalyptus grandis HOM05D004222 ORTHO05D004982 5.2e-35 151.8 176 46.6
AUR62029931 Chenopodium quinoa HOM05D004222 ORTHO05D004982 2.2e-33 146.4 91 78.0
Cc02_g29240 Coffea canephora HOM05D004222 ORTHO05D004982 8.3e-33 144.4 116 66.4
HanXRQChr14g0440851 Helianthus annuus HOM05D004222 ORTHO05D004982 1.2e-31 140.6 177 46.9
AUR62043147 Chenopodium quinoa HOM05D004222 ORTHO05D004982 2.7e-31 139.4 88 76.1
AUR62033567 Chenopodium quinoa HOM05D004222 ORTHO05D004982 4.5e-31 138.7 88 77.3
TPR.G10895 Trifolium pratense HOM05D004222 ORTHO05D004982 4.5e-31 138.7 92 76.1
C06p09920 Brassica napus HOM05D004222 ORTHO05D004982 6.5e-30 134.8 130 61.5
Thhalv10029376m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 8.6e-30 134.4 102 69.6
Ah.06g188160 Amaranthus hybridus HOM05D000059 ORTHO05D004982 1.9e-29 133.3 123 56.9
Duzib160G0511 Durio zibethinus HOM05D004222 ORTHO05D004982 1.0e-27 127.5 114 62.3
BcaC08g43594 Brassica carinata HOM05D004222 ORTHO05D004982 5.9e-23 111.7 92 70.7
BolC6t36064H Brassica oleracea HOM05D004222 ORTHO05D004982 5.9e-23 111.7 92 70.7
Cre07.g353350 Chlamydomonas reinhardtii HOM05D004222 ORTHO05D004982 1.0e-22 110.9 121 43.8
PRCOL_00004328 Prasinoderma coloniale HOM05D004222 ORTHO05D004982 6.6e-22 108.2 122 49.2
Haze_26828 Corylus avellana HOM05D000371 ORTHO05D004982 3.6e-20 102.4 112 42.0
Os07g0612500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 2.6e-18 96.3 144 39.6
FAN05G5041 Fragaria x ananassa HOM05D004222 ORTHO05D004982 1.3e-17 94.0 68 69.1
Medtr6g027990 Medicago truncatula HOM05D004222 ORTHO05D004982 2.1e-12 76.6 65 60.0
MCO04G196 Micromonas commoda HOM05D004222 ORTHO05D004982 3.1e-11 72.8 106 35.8
unitig_52.g17107 Utricularia gibba HOM05D004222 ORTHO05D004982 3.1e-11 72.8 65 60.0
AUR62034601 Chenopodium quinoa HOM05D004222 ORTHO05D004982 5.2e-11 72.0 48 72.9
ECA238G1237 Erigeron canadensis HOM05D004222 ORTHO05D004982 2.2e-09 66.6 169 37.3
CARHR038570 Cardamine hirsuta HOM05D004222 ORTHO05D004982 1.4e-08 63.9 70 54.3
Nitab4.5_0018373g0020 Nicotiana tabacum HOM05D000428 ORTHO05D000582 2.3e-06 56.6 81 43.2


User provided reference genes

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