Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_21074_v3 Cicer arietinum L. HOM05D005402 ORTHO05D007036 0.0e+00 1297.7 657 100.0
Medtr4g132340 Medicago truncatula HOM05D005402 ORTHO05D007036 0.0e+00 1108.6 656 84.8
TPR.G36999 Trifolium pratense HOM05D005402 ORTHO05D007036 0.0e+00 1085.5 657 83.4
Glyma.17G012200 Glycine max HOM05D005402 ORTHO05D007036 7.6e-310 1066.6 657 81.1
Psat4g006080 Pisum sativum HOM05D005402 ORTHO05D007036 7.1e-308 1060.1 663 81.4
Glyma.07G261900 Glycine max HOM05D005402 ORTHO05D007036 1.6e-304 1048.9 657 79.3
Phvul.003G080200 Phaseolus vulgaris HOM05D005402 ORTHO05D007036 9.9e-302 1039.6 656 77.4
VMungo1215G1509 Vigna mungo HOM05D005402 ORTHO05D007036 8.4e-301 1036.6 657 79.0
arahy.Tifrunner.gnm1.ann1.I0ZCH2 Arachis hypogaea HOM05D005402 ORTHO05D007036 9.6e-289 996.5 657 76.3
arahy.Tifrunner.gnm1.ann1.T40CTJ Arachis hypogaea HOM05D005402 ORTHO05D007036 3.7e-288 994.6 657 76.1
Lj4g0015196 Lotus japonicus HOM05D005402 ORTHO05D007036 3.9e-282 974.5 657 75.8
Lalb_Chr07g0177141 Lupinus albus HOM05D005402 ORTHO05D007036 1.7e-277 959.1 658 73.9
Haze_06819 Corylus avellana HOM05D005402 ORTHO05D007036 6.9e-263 910.6 660 68.6
Cfa000204 Carpinus fangiana HOM05D005402 ORTHO05D007036 1.2e-259 899.8 662 67.8
Dinv13911 Davidia involucrata HOM05D005402 ORTHO05D007036 1.2e-254 883.2 661 67.3
Ciclev10014465m.g Citrus clementina HOM05D005402 ORTHO05D007036 6.5e-253 877.5 658 65.2
Duzib235G0987 Durio zibethinus HOM05D005402 ORTHO05D007036 5.2e-250 867.8 657 65.3
Atru.chr10.2252 Acer truncatum HOM05D005402 ORTHO05D007036 3.3e-249 865.1 660 66.2
Prupe.4G224400 Prunus persica HOM05D005402 ORTHO05D007036 9.7e-249 863.6 654 65.0
Manes.16G005300 Manihot esculenta HOM05D005402 ORTHO05D007036 8.2e-248 860.5 657 64.7
CSS0005702 Camellia sinensis var. sinensis HOM05D005402 ORTHO05D007036 1.1e-247 860.1 661 66.6
GSVIVG01012705001 Vitis vinifera HOM05D005402 ORTHO05D007036 1.8e-247 859.4 661 65.4
Gohir.D05G174500 Gossypium hirsutum HOM05D005402 ORTHO05D007036 9.1e-247 857.1 658 63.8
Thecc.06G223300 Theobroma cacao HOM05D005402 ORTHO05D007036 2.0e-246 855.9 658 63.7
Gorai.009G179800 Gossypium raimondii HOM05D005402 ORTHO05D007036 1.3e-245 853.2 658 63.8
QL05p072729 Quercus lobata HOM05D005402 ORTHO05D007036 1.3e-245 853.2 661 64.8
Gohir.A05G171400 Gossypium hirsutum HOM05D005402 ORTHO05D007036 1.7e-245 852.8 658 63.8
Hma1.2p1_0412F.1_g147300 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 1.8e-242 842.8 649 64.4
ClCG01G021860 Citrullus lanatus HOM05D005402 ORTHO05D007036 5.2e-242 841.3 658 64.0
FAN08G3587 Fragaria x ananassa HOM05D005402 ORTHO05D007036 3.8e-237 825.1 663 62.3
CsaV3_6G048920 Cucumis sativus L. HOM05D005402 ORTHO05D007036 5.0e-237 824.7 658 63.1
vmacro15795 Vaccinium macrocarpon HOM05D005402 ORTHO05D007036 5.0e-237 824.7 661 61.4
MELO3C007401.2 Cucumis melo HOM05D005402 ORTHO05D007036 4.2e-236 821.6 658 62.8
FAN18G2172 Fragaria x ananassa HOM05D005402 ORTHO05D007036 1.2e-235 820.1 660 61.8
TAR629G0778 Trochodendron aralioides HOM05D005402 ORTHO05D007036 1.8e-234 816.2 662 63.0
RcHm_v2.0_Chr7g0223851 Rosa chinensis HOM05D005402 ORTHO05D007036 5.2e-234 814.7 660 61.4
PGR004G0080 Punica granatum HOM05D005402 ORTHO05D007036 2.6e-233 812.4 653 62.2
Eucgr.D01347 Eucalyptus grandis HOM05D005402 ORTHO05D007036 5.7e-233 811.2 658 62.2
Sed0000438 Sechium edule HOM05D005402 ORTHO05D007036 9.8e-233 810.4 658 62.2
FAN04G1555 Fragaria x ananassa HOM05D005402 ORTHO05D007036 1.3e-232 810.1 660 61.4
COL.COLO4_31795 Corchorus olitorius HOM05D005402 ORTHO05D007036 1.7e-232 809.7 658 60.2
Nn1g07183 Nelumbo nucifera HOM05D005402 ORTHO05D007036 6.3e-232 807.7 663 62.3
Sopen02g011290 Solanum pennellii HOM05D005402 ORTHO05D007036 1.1e-231 807.0 660 61.4
PGSC0003DMG400022060 Solanum tuberosum HOM05D005402 ORTHO05D007036 1.4e-231 806.6 660 61.4
Solyc02g032920.3 Solanum lycopersicum HOM05D005402 ORTHO05D007036 7.8e-230 800.8 660 60.9
FAN13G2175 Fragaria x ananassa HOM05D005402 ORTHO05D007036 1.0e-229 800.4 660 60.8
Potri.007G040000 Populus trichocarpa HOM05D005402 ORTHO05D007036 8.6e-229 797.3 660 62.1
FvH4_5g29980 Fragaria vesca HOM05D005402 ORTHO05D007036 1.9e-228 796.2 660 61.1
Dinv20063 Davidia involucrata HOM05D005402 ORTHO05D007036 1.2e-227 793.5 661 62.5
Sabra07G0036200 Salix brachista HOM05D005402 ORTHO05D007036 4.0e-226 788.5 670 61.8
CANSAT56G4097 Cannabis sativa HOM05D005402 ORTHO05D007036 6.8e-226 787.7 658 60.3
Cc09_g01510 Coffea canephora HOM05D005402 ORTHO05D007036 6.8e-226 787.7 648 61.0
Nitab4.5_0000005g0240 Nicotiana tabacum HOM05D005402 ORTHO05D007036 8.9e-226 787.3 644 62.3
MSTRG.7199 Avicennia marina HOM05D005402 ORTHO05D007036 2.0e-225 786.2 660 61.5
Nitab4.5_0004712g0050 Nicotiana tabacum HOM05D005402 ORTHO05D007036 2.0e-225 786.2 630 62.2
Oeu040335.1 Olea europaea HOM05D005402 ORTHO05D007036 1.7e-224 783.1 660 61.1
CAN.G128.67 Capsicum annuum HOM05D005402 ORTHO05D007036 2.2e-224 782.7 654 59.8
Migut.M01334 Erythranthe guttata HOM05D005402 ORTHO05D007036 9.2e-223 777.3 646 61.1
Aa31LG6G3970 Aethionema arabicum HOM05D005402 ORTHO05D007036 2.0e-222 776.2 651 60.2
THA.LOC104806309 Tarenaya hassleriana HOM05D005402 ORTHO05D007036 1.5e-220 770.0 657 58.6
DCAR_028193 Daucus carota HOM05D000001 ORTHO05D007036 2.5e-220 769.2 681 58.0
AL7G24400 Arabidopsis lyrata HOM05D005402 ORTHO05D007036 4.7e-219 765.0 656 58.8
Sp7g26160 Schrenkiella parvula HOM05D005402 ORTHO05D007036 4.7e-219 765.0 658 59.1
Carub.0007s1256 Capsella rubella HOM05D005402 ORTHO05D007036 8.0e-219 764.2 659 58.0
SalBow8G4792 Salvia bowleyana HOM05D005402 ORTHO05D007036 1.4e-218 763.5 653 59.3
HanXRQChr15g0470411 Helianthus annuus HOM05D005402 ORTHO05D007036 1.8e-218 763.1 666 58.7
PSO541G1465 Papaver somniferum HOM05D005402 ORTHO05D007036 1.8e-218 763.1 662 58.6
PSO675G3880 Papaver somniferum HOM05D005402 ORTHO05D007036 2.0e-217 759.6 663 58.4
C08p10670 Brassica napus HOM05D005402 ORTHO05D007036 3.4e-217 758.8 652 59.0
MBI02_g15380_MAGBIO Magnolia biondii HOM05D005402 ORTHO05D007036 9.8e-217 757.3 663 57.6
BcaC07g38316 Brassica carinata HOM05D005402 ORTHO05D007036 2.9e-216 755.7 652 59.0
BolC8t48740H Brassica oleracea HOM05D005402 ORTHO05D007036 2.9e-216 755.7 652 59.0
Peaxi162Scf00307g01422 Petunia axillaris HOM05D005402 ORTHO05D007036 1.1e-215 753.8 665 58.5
A08p20200 Brassica napus HOM05D005402 ORTHO05D007036 2.0e-214 749.6 654 58.6
BraA08t33979Z Brassica rapa HOM05D005402 ORTHO05D007036 2.0e-214 749.6 654 58.6
Hund23456 Selenicereus undatus HOM05D005402 ORTHO05D007036 2.7e-214 749.2 660 57.3
Lsat_1_v5_gn_7_16460 Lactuca sativa HOM05D005402 ORTHO05D007036 7.8e-214 747.7 653 58.7
TWI63G0339 Tripterygium wilfordii HOM05D005402 ORTHO05D007036 2.5e-212 742.7 652 58.1
CARHR235910 Cardamine hirsuta HOM05D005402 ORTHO05D007036 3.6e-211 738.8 652 56.6
Peaxi162Scf00394g00020 Petunia axillaris HOM05D005402 ORTHO05D007036 3.6e-211 738.8 657 58.6
Aqoxy1G03121 Aquilegia oxysepala HOM05D005402 ORTHO05D007036 6.8e-210 734.6 662 55.9
BcaB03g12558 Brassica carinata HOM05D005402 ORTHO05D007036 2.1e-206 723.0 653 57.3
ECA236G3723 Erigeron canadensis HOM05D005402 ORTHO05D000490 1.5e-204 716.8 649 58.1
AUR62015290 Chenopodium quinoa HOM05D005402 ORTHO05D007036 3.3e-204 715.7 660 55.2
MD15G1066800 Malus domestica HOM05D005402 ORTHO05D007036 7.3e-204 714.5 665 54.9
AT4G28200 Arabidopsis thaliana HOM05D005402 ORTHO05D007036 4.0e-202 708.8 654 55.8
Thhalv10024642m.g Eutrema salsugineum HOM05D005402 ORTHO05D007036 7.6e-201 704.5 654 55.7
CiPaw.09G093500 Carya illinoinensis HOM05D005402 ORTHO05D007036 1.7e-197 693.3 514 66.9
Lj2C266G9 Lonicera japonica HOM05D005402 ORTHO05D007036 3.0e-197 692.6 652 56.4
Ah.10g032740 Amaranthus hybridus HOM05D005402 ORTHO05D007036 4.3e-196 688.7 650 53.1
MD08G1079900 Malus domestica HOM05D005402 ORTHO05D007036 2.8e-195 686.0 651 53.9
AUR62032734 Chenopodium quinoa HOM05D005402 ORTHO05D007036 9.0e-194 681.0 671 53.1
Actinidia11859 Actinidia chinensis HOM05D005402 ORTHO05D007036 1.7e-192 676.8 657 55.6
Os02g0103900 Oryza sativa ssp. japonica HOM05D005402 ORTHO05D007036 7.6e-185 651.4 684 49.4
CDE05G1008 Ceratophyllum demersum HOM05D005402 ORTHO05D007036 6.4e-184 648.3 663 52.0
unitig_748.g7549 Utricularia gibba HOM05D005402 ORTHO05D007036 1.4e-183 647.1 650 54.0
ATR0743G102 Amborella trichopoda HOM05D005402 ORTHO05D007036 1.5e-180 637.1 665 51.6
Hma1.2p1_0412F.1_g147310 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 6.4e-176 621.7 492 62.4
HPP92_012414 Vanilla planifolia HOM05D005402 ORTHO05D007036 5.8e-169 598.6 661 47.8
BcaB03g12559 Brassica carinata HOM05D005402 ORTHO05D007036 2.7e-142 510.0 420 62.1
Zm00001eb118290 Zea mays HOM05D005402 ORTHO05D007036 2.2e-136 490.3 524 49.4
SGA_v2.0_scaffold4G01907 Striga asiatica HOM05D005402 ORTHO05D007036 2.1e-134 483.8 623 45.7
Sc05g0009280 Simmondsia chinensis HOM05D005402 ORTHO05D007036 1.5e-127 461.1 356 65.2
SGA_v2.0_scaffold7G03813 Striga asiatica HOM05D005402 ORTHO05D007036 3.2e-127 459.9 482 50.6
Mapoly0165s0012 Marchantia polymorpha HOM05D005402 ORTHO05D007036 5.7e-124 449.1 664 38.9
EL10Ac3g06734 Beta vulgaris HOM05D005402 ORTHO05D007036 6.3e-123 445.7 370 60.3
SMO203G0067 Selaginella moellendorffii HOM05D005402 ORTHO05D007036 2.5e-111 407.1 652 37.3
Pp3c5_4450 Physcomitrium patens HOM05D005402 ORTHO05D007036 3.0e-104 383.6 657 35.8
AagrBONN_evm.TU.Sc2ySwM_228.882 Anthoceros agrestis HOM05D005402 ORTHO05D007036 3.1e-93 347.1 512 40.4
SEGI_35740 Sequoiadendron giganteum HOM05D005402 ORTHO05D007036 2.1e-89 334.3 364 48.9
Sc05g0009290 Simmondsia chinensis HOM05D005402 ORTHO05D007036 2.1e-89 334.3 285 56.8
Cpa.g.sc1199.5 Carica papaya HOM05D005402 ORTHO05D007036 4.3e-87 326.6 269 55.8
CBR_g31384 Chara braunii HOM05D005402 ORTHO05D007036 5.2e-77 293.1 760 29.3
Cre10.g442000 Chlamydomonas reinhardtii HOM05D005402 ORTHO05D007036 1.2e-65 255.4 715 27.7
RcHm_v2.0_Chr7g0223961 Rosa chinensis HOM05D005402 ORTHO05D007036 1.0e-64 252.3 270 47.4
EL10Ac3g06733 Beta vulgaris HOM05D005402 ORTHO05D007036 3.4e-60 237.3 349 38.4
CAN.G23.24 Capsicum annuum HOM05D005402 ORTHO05D007036 1.3e-59 235.3 273 46.5
RcHm_v2.0_Chr6g0291751 Rosa chinensis HOM05D005402 ORTHO05D007036 1.5e-47 195.3 223 47.5
RcHm_v2.0_Chr7g0223941 Rosa chinensis HOM05D005402 ORTHO05D007036 1.7e-30 138.7 81 75.3
RcHm_v2.0_Chr7g0223951 Rosa chinensis HOM05D005402 ORTHO05D007036 3.5e-28 131.0 131 52.7
SHI32968 Sapria himalayana HOM05D005402 ORTHO05D007036 1.7e-27 128.6 222 31.5
AagrBONN_evm.TU.Sc2ySwM_228.888 Anthoceros agrestis HOM05D005402 ORTHO05D007036 1.4e-24 119.0 101 52.5
MCO01G148 Micromonas commoda HOM05D005402 ORTHO05D007036 8.2e-22 109.8 209 31.1
SalBow7G0548 Salvia bowleyana HOM05D005402 ORTHO05D037500 8.2e-22 109.8 99 53.5
AagrBONN_evm.TU.Sc2ySwM_228.894 Anthoceros agrestis HOM05D005402 ORTHO05D007036 3.1e-21 107.8 86 52.3
SalBow5G5666 Salvia bowleyana HOM05D005402 ORTHO05D037500 4.5e-20 104.0 76 61.8
Zm00001eb129750 Zea mays HOM05D005402 ORTHO05D007036 7.7e-20 103.2 206 34.5
SalBow1G2367 Salvia bowleyana HOM05D005402 ORTHO05D037500 2.2e-19 101.7 76 60.5
Cfa022130 Carpinus fangiana HOM05D005402 ORTHO05D007036 3.2e-18 97.8 265 30.6
CARHR228840 Cardamine hirsuta HOM05D005402 ORTHO05D007036 4.2e-18 97.4 65 75.4
AagrBONN_evm.TU.Sc2ySwM_228.885 Anthoceros agrestis HOM05D005402 ORTHO05D007036 7.2e-18 96.7 172 36.6
A01p19620 Brassica napus HOM05D005402 ORTHO05D007036 7.0e-13 80.1 101 40.6
Hma1.2p1_0660F.1_g197590 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 1.2e-12 79.3 65 56.9
Zm00001eb238100 Zea mays HOM05D005402 ORTHO05D007036 1.6e-12 79.0 95 43.2
RcHm_v2.0_Chr6g0291761 Rosa chinensis HOM05D005402 ORTHO05D007036 2.1e-09 68.6 61 59.0
VMungo1215G1513 Vigna mungo HOM05D005402 ORTHO05D433923 2.8e-06 58.2 41 78.0


User provided reference genes

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