Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_21044_v3 Cicer arietinum L. HOM05D005537 ORTHO05D006776 1.9e-287 991.9 519 100.0
TPR.G37121 Trifolium pratense HOM05D005537 ORTHO05D006776 4.9e-219 764.6 551 76.2
Medtr4g133100 Medicago truncatula HOM05D005537 ORTHO05D006776 4.1e-210 734.9 550 72.5
Psat4g004960 Pisum sativum HOM05D005537 ORTHO05D006776 6.4e-203 711.1 540 72.2
Glyma.13G103200 Glycine max HOM05D005537 ORTHO05D006776 6.2e-174 614.8 544 63.6
Lj2g0020928 Lotus japonicus HOM05D005537 ORTHO05D006776 4.9e-171 605.1 556 62.6
VMungo1215G0900 Vigna mungo HOM05D005537 ORTHO05D006776 7.1e-170 601.3 547 62.0
arahy.Tifrunner.gnm1.ann1.W452X0 Arachis hypogaea HOM05D005537 ORTHO05D006776 3.0e-168 595.9 548 62.0
arahy.Tifrunner.gnm1.ann1.HQKU7C Arachis hypogaea HOM05D005537 ORTHO05D006776 4.3e-167 592.0 548 61.5
Lalb_Chr13g0299751 Lupinus albus HOM05D005537 ORTHO05D006776 4.9e-163 578.6 543 61.1
TPR.G1254 Trifolium pratense HOM05D005537 ORTHO05D006776 7.2e-154 548.1 535 62.6
Haze_22074 Corylus avellana HOM05D005537 ORTHO05D006776 8.7e-152 541.2 564 57.3
Cfa013489 Carpinus fangiana HOM05D005537 ORTHO05D006776 2.4e-149 533.1 565 56.8
CiPaw.07G200800 Carya illinoinensis HOM05D005537 ORTHO05D006776 3.4e-148 529.3 565 56.5
Manes.02G080100 Manihot esculenta HOM05D005537 ORTHO05D006776 3.3e-143 512.7 556 56.1
Prupe.1G069700 Prunus persica HOM05D005537 ORTHO05D006776 1.3e-142 510.8 539 56.2
Dinv25489 Davidia involucrata HOM05D005537 ORTHO05D006776 2.8e-142 509.6 572 53.3
Psat2g005880 Pisum sativum HOM05D005537 ORTHO05D006776 1.1e-141 507.7 534 57.9
QL11p009893 Quercus lobata HOM05D005537 ORTHO05D006776 2.5e-138 496.5 568 55.1
CSS0045027 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 9.4e-138 494.6 565 52.6
TAR624G0592 Trochodendron aralioides HOM05D005537 ORTHO05D006776 1.6e-137 493.8 570 52.8
CSS0042006 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 4.7e-137 492.3 565 52.4
COL.COLO4_28459 Corchorus olitorius HOM05D005537 ORTHO05D006776 3.0e-136 489.6 552 51.4
MD16G1242600 Malus domestica HOM05D005537 ORTHO05D006776 5.1e-136 488.8 539 54.9
Thecc.08G084500 Theobroma cacao HOM05D005537 ORTHO05D006776 6.7e-136 488.4 554 51.1
MD13G1237200 Malus domestica HOM05D005537 ORTHO05D006776 3.3e-135 486.1 538 54.6
Ciclev10010385m.g Citrus clementina HOM05D005537 ORTHO05D006776 4.4e-135 485.7 569 51.1
Potri.012G036500 Populus trichocarpa HOM05D005537 ORTHO05D006776 7.4e-135 485.0 562 53.0
Rhsim08G0162000 Rhododendron simsii HOM05D005537 ORTHO05D006776 2.2e-134 483.4 552 51.3
RhsimUnG0132200 Rhododendron simsii HOM05D005537 ORTHO05D006776 6.3e-134 481.9 552 51.1
Gohir.D06G023000 Gossypium hirsutum HOM05D005537 ORTHO05D006776 2.4e-133 479.9 554 50.5
ClCG11G011540 Citrullus lanatus HOM05D005537 ORTHO05D006776 7.0e-133 478.4 563 51.2
Gohir.A06G025900 Gossypium hirsutum HOM05D005537 ORTHO05D006776 7.0e-133 478.4 554 50.7
Gorai.002G136300 Gossypium raimondii HOM05D005537 ORTHO05D006776 7.0e-133 478.4 555 51.7
CANSAT01G2612 Cannabis sativa HOM05D005537 ORTHO05D006776 9.1e-133 478.0 559 52.1
Gorai.010G027600 Gossypium raimondii HOM05D005537 ORTHO05D006776 9.1e-133 478.0 554 50.5
Psat2g005840 Pisum sativum HOM05D005537 ORTHO05D006776 1.2e-132 477.6 510 57.3
Duzib041G0776 Durio zibethinus HOM05D005537 ORTHO05D006776 2.0e-132 476.9 553 49.9
Atru.chr2.2727 Acer truncatum HOM05D005537 ORTHO05D006776 3.5e-132 476.1 549 53.4
Sabra15G0023400 Salix brachista HOM05D005537 ORTHO05D006776 3.5e-132 476.1 572 51.4
MELO3C003946.2 Cucumis melo HOM05D005537 ORTHO05D006776 1.7e-131 473.8 565 51.0
Sabra12G0025000 Salix brachista HOM05D005537 ORTHO05D006776 3.8e-131 472.6 559 51.2
Duzib093G2104 Durio zibethinus HOM05D005537 ORTHO05D006776 1.5e-130 470.7 553 50.6
CARHR192210 Cardamine hirsuta HOM05D005537 ORTHO05D006776 5.5e-130 468.8 519 50.5
Lju50A4T51 Lonicera japonica HOM05D005537 ORTHO05D006776 5.5e-130 468.8 552 52.0
FAN07G2345 Fragaria x ananassa HOM05D005537 ORTHO05D006776 2.1e-129 466.8 542 51.1
FAN22G0220 Fragaria x ananassa HOM05D005537 ORTHO05D006776 4.7e-129 465.7 539 51.6
FAN12G0761 Fragaria x ananassa HOM05D005537 ORTHO05D006776 8.0e-129 464.9 538 51.3
TWI63G1753 Tripterygium wilfordii HOM05D005537 ORTHO05D006776 1.4e-128 464.2 611 48.6
FvH4_4g06690 Fragaria vesca HOM05D005537 ORTHO05D006776 1.8e-128 463.8 538 51.1
FAN17G0445 Fragaria x ananassa HOM05D005537 ORTHO05D006776 2.3e-128 463.4 535 52.1
Gohir.A01G123800 Gossypium hirsutum HOM05D005537 ORTHO05D006776 3.0e-128 463.0 555 51.0
BcaB08g36512 Brassica carinata HOM05D005537 ORTHO05D006776 8.8e-128 461.5 520 51.2
PGR044G0610 Punica granatum HOM05D005537 ORTHO05D006776 1.7e-126 457.2 534 52.1
Sed0009431 Sechium edule HOM05D005537 ORTHO05D006776 1.7e-126 457.2 556 49.6
vmacro19325 Vaccinium macrocarpon HOM05D005537 ORTHO05D006776 4.1e-125 452.6 531 50.8
THA.LOC104799619 Tarenaya hassleriana HOM05D005537 ORTHO05D006776 7.0e-125 451.8 541 50.1
Sp6g23880 Schrenkiella parvula HOM05D005537 ORTHO05D006776 9.1e-125 451.4 519 50.3
Thhalv10013208m.g Eutrema salsugineum HOM05D005537 ORTHO05D006776 7.7e-124 448.4 517 49.3
Sed0014380 Sechium edule HOM05D005537 ORTHO05D006776 2.9e-123 446.4 563 49.7
Cc06_g13120 Coffea canephora HOM05D005537 ORTHO05D006776 8.5e-123 444.9 587 47.9
AT5G20600 Arabidopsis thaliana HOM05D005537 ORTHO05D006776 1.5e-122 444.1 516 50.6
AL6G32140 Arabidopsis lyrata HOM05D005537 ORTHO05D006776 1.9e-122 443.7 524 50.0
PGSC0003DMG400004098 Solanum tuberosum HOM05D005537 ORTHO05D006776 5.5e-122 442.2 583 47.5
Sopen07g006800 Solanum pennellii HOM05D005537 ORTHO05D006776 7.2e-122 441.8 579 46.8
BcaC04g19447 Brassica carinata HOM05D005537 ORTHO05D006776 1.2e-121 441.0 518 49.8
Carub.0006s1893 Capsella rubella HOM05D005537 ORTHO05D006776 1.2e-121 441.0 516 49.4
BraA10t44018Z Brassica rapa HOM05D005537 ORTHO05D006776 2.1e-121 440.3 508 50.2
BolC9t58429H Brassica oleracea HOM05D005537 ORTHO05D006776 2.7e-121 439.9 517 49.7
C09p55630 Brassica napus HOM05D005537 ORTHO05D006776 6.1e-121 438.7 518 49.6
Sc18g0003000 Simmondsia chinensis HOM05D005537 ORTHO05D006776 1.0e-120 438.0 562 48.0
Solyc07g017940.1 Solanum lycopersicum HOM05D005537 ORTHO05D006776 1.0e-120 438.0 576 46.7
A10p19410 Brassica napus HOM05D005537 ORTHO05D006776 2.3e-120 436.8 508 50.0
Peaxi162Scf00231g10125 Petunia axillaris HOM05D005537 ORTHO05D006776 2.3e-120 436.8 580 47.9
Nitab4.5_0000055g0260 Nicotiana tabacum HOM05D005537 ORTHO05D006776 5.7e-119 432.2 594 47.5
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 8.3e-118 428.3 503 48.5
Migut.K00238 Erythranthe guttata HOM05D005537 ORTHO05D006776 1.1e-117 427.9 565 47.6
Lsat_1_v5_gn_6_25660 Lactuca sativa HOM05D005537 ORTHO05D006776 1.2e-116 424.5 541 48.4
HanXRQChr13g0401171 Helianthus annuus HOM05D005537 ORTHO05D006776 4.5e-116 422.5 553 49.0
Aa31LG1G14080 Aethionema arabicum HOM05D005537 ORTHO05D006776 5.9e-116 422.2 503 48.7
Nitab4.5_0004772g0040 Nicotiana tabacum HOM05D005537 ORTHO05D006776 1.7e-115 420.6 596 45.6
CDE05G3054 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 5.5e-114 415.6 581 45.4
PSO063G7542 Papaver somniferum HOM05D005537 ORTHO05D006776 1.4e-112 411.0 563 46.0
ECA233G0023 Erigeron canadensis HOM05D005537 ORTHO05D006776 3.0e-112 409.8 548 46.5
Eucgr.C02216 Eucalyptus grandis HOM05D005537 ORTHO05D006776 5.2e-112 409.1 563 48.1
CDE05G2659 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 1.2e-111 407.9 560 45.4
SGA_v2.0_scaffold12G06075 Striga asiatica HOM05D005537 ORTHO05D006776 1.2e-111 407.9 568 46.7
MBI14_g19455_MAGBIO Magnolia biondii HOM05D005537 ORTHO05D006776 1.5e-111 407.5 519 50.1
SGA_v2.0_scaffold17G07935 Striga asiatica HOM05D005537 ORTHO05D006776 1.5e-111 407.5 571 45.4
Ah.09g230210 Amaranthus hybridus HOM05D005537 ORTHO05D006776 4.4e-111 406.0 564 46.1
DCAR_017989 Daucus carota HOM05D005537 ORTHO05D006776 1.7e-110 404.1 596 43.8
SHI03078 Sapria himalayana HOM05D005537 ORTHO05D006776 1.8e-109 400.6 560 45.7
CAN.G1186.23 Capsicum annuum HOM05D005537 ORTHO05D006776 9.2e-109 398.3 594 43.9
AUR62021325 Chenopodium quinoa HOM05D005537 ORTHO05D006776 1.2e-108 397.9 532 47.4
CiPaw.08G029800 Carya illinoinensis HOM05D005537 ORTHO05D006776 2.7e-108 396.7 484 52.5
Aqoxy5G04373 Aquilegia oxysepala HOM05D005537 ORTHO05D006776 1.0e-107 394.8 587 43.4
Cpa.g.sc115.49 Carica papaya HOM05D005537 ORTHO05D006776 1.3e-107 394.4 489 48.9
PSO170G0047 Papaver somniferum HOM05D005537 ORTHO05D006776 1.3e-107 394.4 572 44.4
MSTRG.26216 Avicennia marina HOM05D005537 ORTHO05D006776 1.2e-105 387.9 577 43.5
Nn8g40421 Nelumbo nucifera HOM05D005537 ORTHO05D006776 2.6e-103 380.2 580 42.9
Gohir.D01G111500 Gossypium hirsutum HOM05D005537 ORTHO05D006776 4.1e-101 372.9 441 49.2
unitig_899.g15473 Utricularia gibba HOM05D005537 ORTHO05D006776 6.6e-99 365.5 572 42.0
Actinidia01575 Actinidia chinensis HOM05D005537 ORTHO05D006776 3.1e-96 356.7 577 41.8
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 9.8e-95 351.7 495 44.2
HPP92_018575 Vanilla planifolia HOM05D005537 ORTHO05D006776 3.2e-93 346.7 597 39.9
RcHm_v2.0_Chr4g0398601 Rosa chinensis HOM05D005537 ORTHO05D006776 4.6e-92 342.8 309 58.3
Lju432C4G13 Lonicera japonica HOM05D005537 ORTHO05D006776 3.9e-91 339.7 434 46.3
CsaV3_2G008990 Cucumis sativus L. HOM05D005537 ORTHO05D006776 1.1e-90 338.2 306 57.2
Os04g0658600 Oryza sativa ssp. japonica HOM05D005537 ORTHO05D006776 2.5e-90 337.0 552 39.7
GSVIVG01029258001 Vitis vinifera HOM05D008207 ORTHO05D010373 3.3e-90 336.7 519 42.8
A03p10160 Brassica napus HOM05D005537 ORTHO05D006776 1.1e-88 331.6 449 43.9
Zm00001eb067650 Zea mays HOM05D005537 ORTHO05D006776 1.9e-85 320.9 546 38.6
ATR0580G047 Amborella trichopoda HOM05D005537 ORTHO05D006776 3.5e-84 316.6 723 35.5
SEGI_41129 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 6.0e-76 289.3 665 32.8
AUR62033242 Chenopodium quinoa HOM05D008207 ORTHO05D010373 6.6e-75 285.8 415 44.8
BcaB01g04778 Brassica carinata HOM05D005537 ORTHO05D006776 4.4e-71 273.1 507 36.3
SEGI_27163 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 3.9e-67 260.0 524 35.5
unitig_746.g26559 Utricularia gibba HOM05D005537 ORTHO05D006776 1.6e-65 254.6 273 51.6
Mapoly0006s0254 Marchantia polymorpha HOM05D005537 ORTHO05D006776 3.1e-64 250.4 606 32.7
Pp3c12_970 Physcomitrium patens HOM05D005537 ORTHO05D006776 5.6e-58 229.6 651 28.4
EL10Ac8g18309 Beta vulgaris HOM05D005537 ORTHO05D006776 6.2e-57 226.1 379 41.7
BraA03t10326Z Brassica rapa HOM05D005537 ORTHO05D006776 1.1e-56 225.3 209 52.2
Zm00001eb432550 Zea mays HOM05D005537 ORTHO05D006776 3.4e-55 220.3 479 34.4
Pp3c17_1280 Physcomitrium patens HOM05D005537 ORTHO05D006776 9.9e-55 218.8 294 40.8
AagrBONN_evm.TU.Sc2ySwM_228.2028 Anthoceros agrestis HOM05D005537 ORTHO05D006776 5.5e-53 213.0 692 29.3
SMO012G0033 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 1.1e-50 205.3 498 32.1
Glyma.17G055832 Glycine max HOM05D005537 ORTHO05D006776 1.1e-45 188.7 161 67.7
MELO3C020712.2 Cucumis melo HOM05D005537 ORTHO05D006776 3.1e-40 170.6 170 52.9
SMO172G0175 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 1.4e-37 161.8 440 27.5
Cc00_g32040 Coffea canephora HOM05D005537 ORTHO05D006776 9.3e-37 159.1 142 56.3
CBR_g32208 Chara braunii HOM05D005537 ORTHO05D006776 8.7e-35 152.5 290 33.1
Oeu009853.2 Olea europaea HOM05D005537 ORTHO05D006776 1.3e-33 148.7 171 56.1
Cre01.g019200 Chlamydomonas reinhardtii HOM05D005537 ORTHO05D006776 1.4e-27 128.6 271 32.8
FvH4_5g34681 Fragaria vesca HOM05D005537 ORTHO05D006776 6.7e-27 126.3 135 53.3
PRCOL_00002161 Prasinoderma coloniale HOM05D005537 ORTHO05D006776 3.4e-23 114.0 285 29.1
SEGI_03037 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 3.3e-18 97.4 181 40.3
FvH4_2g25020 Fragaria vesca HOM05D005537 ORTHO05D006776 9.7e-18 95.9 78 60.3
FAN24G0683 Fragaria x ananassa HOM05D005537 ORTHO05D006776 9.7e-18 95.9 78 60.3
MCO12G389 Micromonas commoda HOM05D005537 ORTHO05D006776 1.1e-16 92.4 166 34.9
unitig_746.g26560 Utricularia gibba HOM05D005537 ORTHO05D006776 2.2e-14 84.7 117 44.4
MSTRG.6231 Avicennia marina HOM05D005537 ORTHO05D006776 1.1e-08 65.9 87 42.5
Cfa026542 Carpinus fangiana HOM05D005537 ORTHO05D124841 4.5e-07 60.5 129 34.9
SGA_v2.0_scaffold522G52710 Striga asiatica HOM05D003781 ORTHO05D004299 1.3e-06 58.9 123 31.7
Ca_11816_v3 Cicer arietinum L. HOM05D000263 ORTHO05D000213 1.7e-06 58.5 44 70.5
Ca_30653_v3 Cicer arietinum L. HOM05D000263 ORTHO05D000213 1.7e-06 58.5 44 70.5


User provided reference genes

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