Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_20760_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 1.8e-130 469.5 288 100.0
Ca_31306_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 5.8e-129 464.5 286 99.7
TPR.G19495 Trifolium pratense HOM05D002828 ORTHO05D003457 8.7e-109 397.5 288 85.1
TPR.G27266 Trifolium pratense HOM05D003921 ORTHO05D004394 8.7e-101 370.9 288 81.6
Glyma.20G233800 Glycine max HOM05D003921 ORTHO05D004394 1.1e-100 370.5 289 81.0
Phvul.007G180200 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 9.6e-100 367.5 291 83.5
Phvul.007G264700 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 9.0e-98 360.9 291 82.5
Medtr5g028350 Medicago truncatula HOM05D003921 ORTHO05D004394 6.0e-94 348.2 290 80.3
VMungo0720G1998 Vigna mungo HOM05D003921 ORTHO05D004394 7.9e-94 347.8 291 79.4
Medtr8g075400 Medicago truncatula HOM05D003921 ORTHO05D004394 3.7e-91 339.0 286 80.4
Lalb_Chr10g0096111 Lupinus albus HOM05D003921 ORTHO05D004394 4.8e-91 338.6 294 67.0
Lj3g0006890 Lotus japonicus HOM05D003921 ORTHO05D004394 6.9e-90 334.7 288 71.5
arahy.Tifrunner.gnm1.ann1.HSUB65 Arachis hypogaea HOM05D003921 ORTHO05D004394 1.2e-89 334.0 275 73.8
Ca_25165_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 2.6e-89 332.8 290 80.0
Glyma.10G154500 Glycine max HOM05D003921 ORTHO05D004394 4.5e-89 332.0 289 70.2
Haze_17961 Corylus avellana HOM05D003921 ORTHO05D004394 2.5e-87 326.2 292 64.7
Psat2g139240 Pisum sativum HOM05D003921 ORTHO05D004394 4.2e-87 325.5 291 77.7
Cfa018157 Carpinus fangiana HOM05D003921 ORTHO05D004394 1.6e-86 323.6 292 64.4
Lalb_Chr06g0167921 Lupinus albus HOM05D003921 ORTHO05D004394 2.1e-86 323.2 286 65.4
TAR626G1747 Trochodendron aralioides HOM05D003921 ORTHO05D004394 6.7e-85 318.2 273 78.8
Cpa.g.sc3.273 Carica papaya HOM05D003921 ORTHO05D004394 4.8e-83 312.0 294 61.2
CiPaw.15G078700 Carya illinoinensis HOM05D003921 ORTHO05D004394 4.8e-83 312.0 286 77.3
Prupe.2G282000 Prunus persica HOM05D003921 ORTHO05D004394 9.0e-82 307.8 285 74.0
Potri.015G131200 Populus trichocarpa HOM05D003921 ORTHO05D004394 1.2e-81 307.4 296 60.8
COL.COLO4_14179 Corchorus olitorius HOM05D003921 ORTHO05D004394 2.6e-81 306.2 289 68.9
Hma1.2p1_0654F.1_g196410 Hydrangea macrophylla HOM05D003921 ORTHO05D004394 1.0e-80 304.3 296 58.8
MD01G1185600 Malus domestica HOM05D003921 ORTHO05D004394 2.2e-80 303.1 284 75.0
MBI05_g15474_MAGBIO Magnolia biondii HOM05D003921 ORTHO05D004394 7.2e-79 298.1 283 61.1
Gohir.A07G039500 Gossypium hirsutum HOM05D003921 ORTHO05D004394 4.6e-78 295.4 287 62.0
CSS0011813 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 1.0e-77 294.3 293 70.6
MD07G1257700 Malus domestica HOM05D003921 ORTHO05D004394 3.0e-77 292.7 280 73.9
CSS0049059 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 5.1e-77 292.0 276 61.2
Gohir.D07G043600 Gossypium hirsutum HOM05D003921 ORTHO05D004394 1.1e-76 290.8 296 60.1
PGR042G0045 Punica granatum HOM05D003921 ORTHO05D004394 1.1e-76 290.8 291 67.4
Gorai.001G046600 Gossypium raimondii HOM05D003921 ORTHO05D004394 2.5e-76 289.7 296 60.1
QL02p008779 Quercus lobata HOM05D003921 ORTHO05D004394 2.5e-76 289.7 281 65.1
Thecc.03G161300 Theobroma cacao HOM05D003921 ORTHO05D004394 4.3e-76 288.9 280 61.4
Lalb_Chr17g0338581 Lupinus albus HOM05D003921 ORTHO05D004394 5.7e-76 288.5 291 59.8
Rhsim11G0028600 Rhododendron simsii HOM05D003921 ORTHO05D004394 5.7e-76 288.5 299 57.2
vmacro18851 Vaccinium macrocarpon HOM05D003921 ORTHO05D004394 7.4e-76 288.1 292 58.9
Atru.chr1.637 Acer truncatum HOM05D003921 ORTHO05D004394 2.2e-75 286.6 287 66.2
ClCG01G005120 Citrullus lanatus HOM05D003921 ORTHO05D004394 2.2e-75 286.6 259 70.3
FvH4_7g28160 Fragaria vesca HOM05D003921 ORTHO05D004394 2.2e-75 286.6 259 70.7
Aa31LG5G22190 Aethionema arabicum HOM05D003921 ORTHO05D004394 6.3e-75 285.0 291 59.1
Dinv22928 Davidia involucrata HOM05D003921 ORTHO05D004394 6.3e-75 285.0 289 58.8
Cc02_g03920 Coffea canephora HOM05D003921 ORTHO05D004394 1.1e-74 284.3 291 66.3
Sed0011284 Sechium edule HOM05D003921 ORTHO05D004394 1.1e-74 284.3 294 65.3
PSO478G1412 Papaver somniferum HOM05D003921 ORTHO05D004394 1.4e-74 283.9 278 68.3
PSO782G4293 Papaver somniferum HOM05D003921 ORTHO05D004394 1.4e-74 283.9 289 66.4
Aqoxy1G01610 Aquilegia oxysepala HOM05D003921 ORTHO05D004394 1.8e-74 283.5 293 63.1
RcHm_v2.0_Chr1g0375101 Rosa chinensis HOM05D003921 ORTHO05D004394 2.4e-74 283.1 257 65.8
FAN06G4038 Fragaria x ananassa HOM05D003921 ORTHO05D004394 3.1e-74 282.7 259 69.1
Sed0026547 Sechium edule HOM05D003921 ORTHO05D004394 3.1e-74 282.7 297 65.7
Migut.J00413 Erythranthe guttata HOM05D003921 ORTHO05D004394 9.0e-74 281.2 287 57.8
BraA01t03380Z Brassica rapa HOM05D003921 ORTHO05D004394 1.2e-73 280.8 290 60.7
Manes.06G137800 Manihot esculenta HOM05D003921 ORTHO05D004394 1.2e-73 280.8 297 58.6
A01p32500 Brassica napus HOM05D003921 ORTHO05D004394 2.0e-73 280.0 290 60.3
TAR636G2246 Trochodendron aralioides HOM05D003921 ORTHO05D004394 2.0e-73 280.0 297 57.2
SGA_v2.0_scaffold126G33894 Striga asiatica HOM05D003921 ORTHO05D004394 3.4e-73 279.3 258 69.0
BraA03t13433Z Brassica rapa HOM05D003921 ORTHO05D004394 1.3e-72 277.3 293 61.8
FAN03G1144 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.7e-72 276.9 249 70.3
TWI14G0513 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 2.9e-72 276.2 295 62.4
BcaB06g26378 Brassica carinata HOM05D003921 ORTHO05D004394 5.0e-72 275.4 289 60.6
Aa31LG5G22200 Aethionema arabicum HOM05D003921 ORTHO05D004394 6.5e-72 275.0 289 56.7
CDE07G0272 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 6.5e-72 275.0 287 58.2
unitig_744.g24672 Utricularia gibba HOM05D003921 ORTHO05D004394 1.1e-71 274.2 275 65.8
BcaC05g28029 Brassica carinata HOM05D003921 ORTHO05D004394 1.4e-71 273.9 289 69.6
BcaC09g49188 Brassica carinata HOM05D003921 ORTHO05D004394 1.4e-71 273.9 292 61.0
C01p41660 Brassica napus HOM05D003921 ORTHO05D004394 1.4e-71 273.9 292 61.0
BolC1t04121H Brassica oleracea HOM05D003921 ORTHO05D004394 1.4e-71 273.9 292 61.0
BraA05t21488Z Brassica rapa HOM05D003921 ORTHO05D004394 1.4e-71 273.9 291 60.5
A03p42870 Brassica napus HOM05D003921 ORTHO05D004394 2.5e-71 273.1 293 60.8
FAN06G2146 Fragaria x ananassa HOM05D003921 ORTHO05D004394 3.2e-71 272.7 255 68.6
A05p26040 Brassica napus HOM05D003921 ORTHO05D004394 4.2e-71 272.3 282 61.3
BolC5t32786H Brassica oleracea HOM05D003921 ORTHO05D004394 5.5e-71 271.9 289 69.2
FAN10G0634 Fragaria x ananassa HOM05D003921 ORTHO05D004394 5.5e-71 271.9 255 68.6
FAN01G0440 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.2e-70 270.8 255 68.2
FAN03G3435 Fragaria x ananassa HOM05D003921 ORTHO05D004394 2.1e-70 270.0 255 68.2
TWI23G0331 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 2.7e-70 269.6 296 61.5
BcaB04g20506 Brassica carinata HOM05D003921 ORTHO05D004394 4.6e-70 268.9 292 59.2
Duzib084G0641 Durio zibethinus HOM05D003921 ORTHO05D004394 6.1e-70 268.5 293 58.0
HanXRQChr05g0141401 Helianthus annuus HOM05D003921 ORTHO05D004394 6.1e-70 268.5 264 64.4
CSS0023430 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 1.4e-69 267.3 276 58.3
MELO3C005417.2 Cucumis melo HOM05D003921 ORTHO05D004394 1.4e-69 267.3 299 59.2
Rhsim07G0193400 Rhododendron simsii HOM05D003921 ORTHO05D004394 1.4e-69 267.3 278 56.5
CARHR098540 Cardamine hirsuta HOM05D003921 ORTHO05D004394 6.7e-69 265.0 291 67.4
CsaV3_5G005400 Cucumis sativus L. HOM05D003921 ORTHO05D004394 6.7e-69 265.0 267 62.2
DCAR_020219 Daucus carota HOM05D003921 ORTHO05D004394 6.7e-69 265.0 264 65.2
Eucgr.E01709 Eucalyptus grandis HOM05D003921 ORTHO05D004394 8.8e-69 264.6 266 57.9
HanXRQChr08g0224051 Helianthus annuus HOM05D003921 ORTHO05D004394 8.8e-69 264.6 264 62.5
Thhalv10021245m.g Eutrema salsugineum HOM05D003921 ORTHO05D004394 2.0e-68 263.5 291 58.4
BcaC01g03432 Brassica carinata HOM05D003921 ORTHO05D004394 2.6e-68 263.1 297 58.2
AT3G22660 Arabidopsis thaliana HOM05D003921 ORTHO05D004394 3.3e-68 262.7 256 58.6
BolC3t17533H Brassica oleracea HOM05D003921 ORTHO05D004394 5.7e-68 261.9 299 59.2
Ciclev10005521m.g Citrus clementina HOM05D003921 ORTHO05D004394 9.7e-68 261.2 262 59.5
BcaB04g19210 Brassica carinata HOM05D003921 ORTHO05D004394 1.3e-67 260.8 256 63.3
C03p52650 Brassica napus HOM05D003921 ORTHO05D004394 1.3e-67 260.8 299 57.5
Ca_27419_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 1.7e-67 260.4 180 98.9
Carub.0003s2281 Capsella rubella HOM05D003921 ORTHO05D004394 2.2e-67 260.0 289 54.3
Solyc01g006090.3 Solanum lycopersicum HOM05D003921 ORTHO05D004394 4.8e-67 258.8 288 54.9
Lsat_1_v5_gn_6_96180 Lactuca sativa HOM05D003921 ORTHO05D004394 8.2e-67 258.1 264 56.8
AL3G36960 Arabidopsis lyrata HOM05D003921 ORTHO05D004394 1.8e-66 256.9 288 54.2
Solyc01g006170.4 Solanum lycopersicum HOM05D003921 ORTHO05D004394 4.1e-66 255.8 293 52.9
Sc03g0002240 Simmondsia chinensis HOM05D003921 ORTHO05D004394 5.3e-66 255.4 289 55.0
Nitab4.5_0001620g0040 Nicotiana tabacum HOM05D003921 ORTHO05D004394 6.9e-66 255.0 267 61.8
Sopen01g002180 Solanum pennellii HOM05D003921 ORTHO05D004394 1.5e-65 253.8 293 52.6
Nitab4.5_0005477g0070 Nicotiana tabacum HOM05D003921 ORTHO05D004394 3.4e-65 252.7 299 57.5
ATR0626G386 Amborella trichopoda HOM05D003921 ORTHO05D004394 5.9e-65 251.9 281 56.9
PGSC0003DMG400032192 Solanum tuberosum HOM05D003921 ORTHO05D004394 5.9e-65 251.9 275 54.2
PGSC0003DMG400032141 Solanum tuberosum HOM05D003921 ORTHO05D004394 2.2e-64 250.0 296 52.4
THA.LOC104808294 Tarenaya hassleriana HOM05D003921 ORTHO05D004394 2.2e-64 250.0 286 54.5
Lj1P984T37 Lonicera japonica HOM05D003921 ORTHO05D004394 3.8e-64 249.2 266 56.4
Ah.06g188120 Amaranthus hybridus HOM05D003921 ORTHO05D004394 3.2e-63 246.1 269 62.8
ECA234G0656 Erigeron canadensis HOM05D003921 ORTHO05D004394 2.7e-62 243.0 287 55.1
Zm00001eb235000 Zea mays HOM05D003921 ORTHO05D004394 2.7e-62 243.0 282 59.9
Sp3g20420 Schrenkiella parvula HOM05D003921 ORTHO05D004394 3.6e-62 242.7 289 51.9
Ah.06g188100 Amaranthus hybridus HOM05D003921 ORTHO05D004394 6.1e-62 241.9 295 58.6
EL10Ac4g09457 Beta vulgaris HOM05D003921 ORTHO05D004394 2.6e-60 236.5 292 50.7
CANSAT11G2317 Cannabis sativa HOM05D003921 ORTHO05D004394 2.6e-60 236.5 247 55.9
AUR62000393 Chenopodium quinoa HOM05D003921 ORTHO05D004394 2.6e-60 236.5 297 50.8
Zm00001eb104900 Zea mays HOM05D003921 ORTHO05D004394 1.1e-58 231.1 249 62.7
Ah.06g188150 Amaranthus hybridus HOM05D003921 ORTHO05D004394 1.4e-58 230.7 272 59.2
Dinv22984 Davidia involucrata HOM05D003921 ORTHO05D004394 2.4e-58 229.9 287 51.9
Ciclev10006627m.g Citrus clementina HOM05D003921 ORTHO05D004394 1.6e-57 227.3 275 61.5
Rhsim11G0028700 Rhododendron simsii HOM05D003921 ORTHO05D004394 1.3e-56 224.2 289 50.5
Peaxi162Scf00441g00013 Petunia axillaris HOM05D003921 ORTHO05D004394 5.0e-56 222.2 264 54.2
ECA233G5254 Erigeron canadensis HOM05D003921 ORTHO05D004394 1.2e-54 217.6 240 57.9
FAN10G0556 Fragaria x ananassa HOM05D003921 ORTHO05D004394 6.1e-54 215.3 193 69.9
CAN.G140.50 Capsicum annuum HOM05D003921 ORTHO05D004394 1.4e-53 214.2 286 55.9
AUR62006749 Chenopodium quinoa HOM05D003921 ORTHO05D004394 2.0e-52 210.3 294 54.4
Os07g0475800 Oryza sativa ssp. japonica HOM05D003921 ORTHO05D004394 2.6e-52 209.9 289 54.7
Oeu019922.1 Olea europaea HOM05D003921 ORTHO05D004394 7.0e-50 201.8 247 59.9
Nitab4.5_0000249g0460 Nicotiana tabacum HOM05D003921 ORTHO05D004394 7.7e-49 198.4 266 50.4
CDE04G0151 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 2.3e-45 186.8 204 60.8
SHI13875 Sapria himalayana HOM05D003921 ORTHO05D004394 3.4e-44 183.0 248 49.6
Sopen01g002090 Solanum pennellii HOM05D003921 ORTHO05D004394 2.2e-43 180.3 203 54.2
Pp3c6_25210 Physcomitrium patens HOM05D003921 ORTHO05D004394 4.5e-41 172.6 274 40.5
MSTRG.14093 Avicennia marina HOM05D003921 ORTHO05D004394 1.3e-40 171.0 148 77.7
Nn1g08099 Nelumbo nucifera HOM05D003921 ORTHO05D004394 1.3e-40 171.0 124 70.2
SMO174G0035 Selaginella moellendorffii HOM05D003921 ORTHO05D004394 2.9e-40 169.9 259 44.4
Ah.06g188070 Amaranthus hybridus HOM05D003921 ORTHO05D004394 9.5e-39 164.9 159 67.9
BcaC09g49189 Brassica carinata HOM05D003921 ORTHO05D004394 9.5e-39 164.9 187 68.4
Nitab4.5_0004389g0020 Nicotiana tabacum HOM05D003921 ORTHO05D004394 9.5e-39 164.9 293 41.3
Oeu019920.1 Olea europaea HOM05D003921 ORTHO05D004394 1.6e-38 164.1 313 50.5
DCAR_018123 Daucus carota HOM05D003921 ORTHO05D004394 2.8e-38 163.3 274 50.7
HPP92_008700 Vanilla planifolia HOM05D003921 ORTHO05D004394 3.4e-36 156.4 132 56.8
Eucgr.K01460 Eucalyptus grandis HOM05D003921 ORTHO05D004394 4.9e-35 152.5 136 61.0
Nn1g01220 Nelumbo nucifera HOM05D003921 ORTHO05D004394 6.3e-35 152.1 127 63.8
Oeu021724.1 Olea europaea HOM05D003921 ORTHO05D004394 1.8e-34 150.6 267 42.7
Ca_29708_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 1.3e-32 144.4 80 95.0
Oeu023230.1 Olea europaea HOM05D003921 ORTHO05D004394 1.3e-32 144.4 273 39.2
GSVIVG01018514001 Vitis vinifera HOM05D003921 ORTHO05D004394 5.6e-31 139.0 289 39.4
Mapoly0140s0011 Marchantia polymorpha HOM05D003921 ORTHO05D004394 3.6e-30 136.3 263 36.9
MSTRG.5717 Avicennia marina HOM05D003921 ORTHO05D004394 2.3e-29 133.7 191 60.7
RcHm_v2.0_Chr5g0027461 Rosa chinensis HOM05D003921 ORTHO05D017011 1.5e-28 131.0 118 56.8
Hund09280 Selenicereus undatus HOM05D003921 ORTHO05D004394 1.7e-27 127.5 117 64.1
Hund09282 Selenicereus undatus HOM05D003921 ORTHO05D004394 1.7e-27 127.5 117 64.1
AagrBONN_evm.TU.Sc2ySwM_228.1082 Anthoceros agrestis HOM05D003921 ORTHO05D004394 8.3e-27 125.2 291 33.0
MSTRG.14095 Avicennia marina HOM05D003921 ORTHO05D004394 1.1e-26 124.8 117 62.4
PRCOL_00003036 Prasinoderma coloniale HOM05D003921 ORTHO05D004394 5.0e-24 115.9 247 32.0
Nn4g26407 Nelumbo nucifera HOM05D003921 ORTHO05D004394 1.1e-23 114.8 101 61.4
Actinidia39598 Actinidia chinensis HOM05D003921 ORTHO05D004394 1.6e-22 110.9 102 61.8
ATR0564G120 Amborella trichopoda HOM05D003921 ORTHO05D004394 6.2e-22 109.0 195 40.0
CBR_g18581 Chara braunii HOM05D001161 ORTHO05D000497 6.8e-21 105.5 253 34.8
Cre07.g351750 Chlamydomonas reinhardtii HOM05D003921 ORTHO05D004394 2.0e-20 104.0 239 35.6
Actinidia25037 Actinidia chinensis HOM05D003921 ORTHO05D004394 2.6e-20 103.6 87 62.1
Prupe.2G115300 Prunus persica HOM05D003921 ORTHO05D004394 1.9e-18 97.4 217 37.3
Actinidia31394 Actinidia chinensis HOM05D003921 ORTHO05D004394 3.2e-18 96.7 169 43.8
MCO16G303 Micromonas commoda HOM05D003921 ORTHO05D004394 9.2e-18 95.1 203 34.0
Nn4g26401 Nelumbo nucifera HOM05D003921 ORTHO05D004394 6.6e-16 89.0 68 66.2
Ah.06g188140 Amaranthus hybridus HOM05D003921 ORTHO05D004394 2.5e-15 87.0 117 52.1
Actinidia13554 Actinidia chinensis HOM05D003921 ORTHO05D004394 4.3e-15 86.3 57 73.7
Ah.06g188080 Amaranthus hybridus HOM05D003921 ORTHO05D004394 1.4e-13 81.3 91 58.2
Gohir.D12G264333 Gossypium hirsutum HOM05D003921 ORTHO05D004394 6.8e-13 79.0 273 29.3
Gorai.008G283700 Gossypium raimondii HOM05D003921 ORTHO05D004394 6.8e-13 79.0 265 30.9
Oeu039213.1 Olea europaea HOM05D003921 ORTHO05D004394 6.4e-11 72.4 75 57.3
FvH4_1g22470 Fragaria vesca HOM05D003475 ORTHO05D035452 1.6e-09 67.8 54 64.8
Dinv10307 Davidia involucrata HOM05D003921 ORTHO05D004394 4.3e-07 59.7 36 77.8
Prupe.2G115400 Prunus persica HOM05D003921 ORTHO05D004394 2.8e-06 57.0 61 63.9
DCAR_013591 Daucus carota HOM05D003921 ORTHO05D004394 8.1e-06 55.5 103 37.9
DCAR_018080 Daucus carota HOM05D002169 ORTHO05D018172 8.1e-06 55.5 99 40.4


User provided reference genes

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