Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_20138_v3 Cicer arietinum L. HOM05D004814 ORTHO05D005778 1.1e-105 386.7 202 100.0
Psat5g170120 Pisum sativum HOM05D004814 ORTHO05D005778 1.5e-78 296.6 202 80.7
Glyma.08G327500 Glycine max HOM05D004814 ORTHO05D005778 3.0e-76 288.9 212 77.8
arahy.Tifrunner.gnm1.ann1.0CA1AM Arachis hypogaea HOM05D004814 ORTHO05D005778 2.8e-74 282.3 208 75.0
Phvul.006G055300 Phaseolus vulgaris HOM05D004814 ORTHO05D005778 2.8e-74 282.3 210 75.2
TPR.G30737 Trifolium pratense HOM05D004814 ORTHO05D005778 8.3e-74 280.8 202 77.2
arahy.Tifrunner.gnm1.ann1.RG8M6K Arachis hypogaea HOM05D004814 ORTHO05D005778 1.1e-73 280.4 208 75.0
Glyma.18G079900 Glycine max HOM05D004814 ORTHO05D005778 1.1e-73 280.4 204 76.5
arahy.Tifrunner.gnm1.ann1.CWZH2K Arachis hypogaea HOM05D004814 ORTHO05D005778 1.8e-73 279.6 208 74.5
Phvul.001G030600 Phaseolus vulgaris HOM05D004814 ORTHO05D005778 5.4e-73 278.1 210 74.3
Medtr3g058430 Medicago truncatula HOM05D004814 ORTHO05D005778 1.2e-72 276.9 203 77.3
arahy.Tifrunner.gnm1.ann1.X98J9H Arachis hypogaea HOM05D004814 ORTHO05D005778 2.0e-72 276.2 207 74.4
QL08p004842 Quercus lobata HOM05D004814 ORTHO05D005778 1.7e-71 273.1 208 72.6
CiPaw.12G136400 Carya illinoinensis HOM05D004814 ORTHO05D005778 8.0e-69 264.2 208 70.7
Cfa020215 Carpinus fangiana HOM05D004814 ORTHO05D005778 5.2e-68 261.5 208 71.2
CANSAT11G0174 Cannabis sativa HOM05D004814 ORTHO05D005778 2.2e-66 256.1 202 71.3
Lalb_Chr05g0211691 Lupinus albus HOM05D004814 ORTHO05D005778 6.4e-66 254.6 215 69.8
Dinv10318 Davidia involucrata HOM05D004814 ORTHO05D005778 8.3e-66 254.2 203 70.9
TWI39G1010 Tripterygium wilfordii HOM05D004814 ORTHO05D005778 1.4e-65 253.4 206 67.5
MD03G1187000 Malus domestica HOM05D004814 ORTHO05D005778 3.2e-65 252.3 202 69.3
Potri.011G092800 Populus trichocarpa HOM05D004814 ORTHO05D005778 7.0e-65 251.1 209 68.4
Haze_09803 Corylus avellana HOM05D004814 ORTHO05D005778 3.5e-64 248.8 202 70.3
Manes.03G139872 Manihot esculenta HOM05D004814 ORTHO05D005778 3.5e-64 248.8 213 65.7
FAN21G1289 Fragaria x ananassa HOM05D004814 ORTHO05D005778 1.0e-63 247.3 204 69.6
TWI38G0785 Tripterygium wilfordii HOM05D004814 ORTHO05D005778 1.0e-63 247.3 207 66.7
MELO3C024899.2 Cucumis melo HOM05D004814 ORTHO05D005778 1.3e-63 246.9 208 68.3
CsaV3_7G018640 Cucumis sativus L. HOM05D004814 ORTHO05D005778 1.3e-63 246.9 208 67.3
Dinv40842 Davidia involucrata HOM05D004814 ORTHO05D005778 1.3e-63 246.9 203 68.0
FvH4_3g29500 Fragaria vesca HOM05D004814 ORTHO05D005778 1.3e-63 246.9 204 69.6
FAN11G3417 Fragaria x ananassa HOM05D004814 ORTHO05D005778 1.3e-63 246.9 204 69.6
Sed0017349 Sechium edule HOM05D004814 ORTHO05D005778 2.3e-63 246.1 208 68.8
ClCG09G021040 Citrullus lanatus HOM05D004814 ORTHO05D005778 3.9e-63 245.4 208 67.8
Hma1.2p1_0889F.1_g232870 Hydrangea macrophylla HOM05D004814 ORTHO05D005778 1.1e-62 243.8 214 66.8
Manes.15G061900 Manihot esculenta HOM05D004814 ORTHO05D005778 3.3e-62 242.3 216 63.9
GSVIVG01014640001 Vitis vinifera HOM05D004814 ORTHO05D005778 5.6e-62 241.5 202 65.8
FAN16G2593 Fragaria x ananassa HOM05D004814 ORTHO05D005778 7.3e-62 241.1 204 68.6
RcHm_v2.0_Chr5g0054381 Rosa chinensis HOM05D004814 ORTHO05D005778 7.3e-62 241.1 205 69.8
Sabra11G0087000 Salix brachista HOM05D004814 ORTHO05D005778 1.6e-61 240.0 209 66.0
FAN25G3790 Fragaria x ananassa HOM05D004814 ORTHO05D005778 2.8e-61 239.2 204 68.6
Actinidia30418 Actinidia chinensis HOM05D004814 ORTHO05D005778 4.7e-61 238.4 203 68.0
Gorai.007G310400 Gossypium raimondii HOM05D004814 ORTHO05D005778 1.1e-60 237.3 206 67.5
Gohir.D11G287000 Gossypium hirsutum HOM05D004814 ORTHO05D005778 1.8e-60 236.5 206 67.5
Gohir.A01G090000 Gossypium hirsutum HOM05D004814 ORTHO05D005778 2.3e-60 236.1 205 67.8
TAR626G1431 Trochodendron aralioides HOM05D004814 ORTHO05D005778 2.3e-60 236.1 208 67.3
Gohir.D01G075300 Gossypium hirsutum HOM05D004814 ORTHO05D005778 3.1e-60 235.7 205 67.3
Gorai.002G098500 Gossypium raimondii HOM05D004814 ORTHO05D005778 3.1e-60 235.7 205 67.3
Gohir.A11G276900 Gossypium hirsutum HOM05D004814 ORTHO05D005778 5.2e-60 235.0 206 68.0
CSS0025876 Camellia sinensis var. sinensis HOM05D004814 ORTHO05D005778 6.8e-60 234.6 204 67.2
Potri.001G365600 Populus trichocarpa HOM05D004814 ORTHO05D005778 6.8e-60 234.6 208 63.5
PSO541G0969 Papaver somniferum HOM05D004814 ORTHO05D005778 8.9e-60 234.2 208 66.8
PSO675G8482 Papaver somniferum HOM05D004814 ORTHO05D005778 1.2e-59 233.8 208 66.8
TAR629G3287 Trochodendron aralioides HOM05D004814 ORTHO05D005778 1.2e-59 233.8 208 65.9
Actinidia05019 Actinidia chinensis HOM05D004814 ORTHO05D005778 2.6e-59 232.6 204 67.2
Hund01909 Selenicereus undatus HOM05D004814 ORTHO05D005778 2.6e-59 232.6 204 67.2
MD11G1202000 Malus domestica HOM05D004814 ORTHO05D005778 3.4e-59 232.3 202 64.9
Sabra16G0239200 Salix brachista HOM05D004814 ORTHO05D005778 3.4e-59 232.3 213 64.8
Thecc.07G016800 Theobroma cacao HOM05D004814 ORTHO05D005778 3.4e-59 232.3 206 66.5
AUR62036421 Chenopodium quinoa HOM05D004814 ORTHO05D005778 5.8e-59 231.5 205 66.3
AUR62036427 Chenopodium quinoa HOM05D004814 ORTHO05D005778 5.8e-59 231.5 205 66.3
AUR62040646 Chenopodium quinoa HOM05D004814 ORTHO05D005778 5.8e-59 231.5 205 66.3
EL10Ac4g07605 Beta vulgaris HOM05D004814 ORTHO05D005778 7.5e-59 231.1 206 65.5
AUR62017069 Chenopodium quinoa HOM05D004814 ORTHO05D005778 7.5e-59 231.1 205 65.9
DCAR_013223 Daucus carota HOM05D004814 ORTHO05D005778 7.5e-59 231.1 201 65.2
Ah.04g166490 Amaranthus hybridus HOM05D004814 ORTHO05D005778 2.9e-58 229.2 202 64.9
Duzib213G0234 Durio zibethinus HOM05D004814 ORTHO05D005778 2.9e-58 229.2 206 66.5
Aa31LG8G330 Aethionema arabicum HOM05D004814 ORTHO05D005778 6.4e-58 228.0 204 66.2
COL.COLO4_09806 Corchorus olitorius HOM05D004814 ORTHO05D005778 1.4e-57 226.9 202 64.9
Thhalv10021566m.g Eutrema salsugineum HOM05D004814 ORTHO05D005778 1.4e-57 226.9 205 64.9
PGR031G1774 Punica granatum HOM05D004814 ORTHO05D005778 1.4e-57 226.9 203 65.0
AL3G24860 Arabidopsis lyrata HOM05D004814 ORTHO05D005778 1.9e-57 226.5 207 65.2
Prupe.4G239600 Prunus persica HOM05D004814 ORTHO05D005778 1.9e-57 226.5 202 63.9
BraA03t12957Z Brassica rapa HOM05D004814 ORTHO05D005778 4.1e-57 225.3 207 65.2
Carub.0003s1246 Capsella rubella HOM05D004814 ORTHO05D005778 4.1e-57 225.3 208 66.3
Oeu057089.1 Olea europaea HOM05D004814 ORTHO05D005778 4.1e-57 225.3 203 64.5
vmacro22713 Vaccinium macrocarpon HOM05D004814 ORTHO05D005778 5.4e-57 224.9 204 64.2
Ah.06g181280 Amaranthus hybridus HOM05D004814 ORTHO05D005778 7.1e-57 224.6 202 64.9
Aqoxy4G02247 Aquilegia oxysepala HOM05D004814 ORTHO05D005778 7.1e-57 224.6 205 65.4
Nn1g03216 Nelumbo nucifera HOM05D004814 ORTHO05D005778 7.1e-57 224.6 210 63.3
AT3G13120 Arabidopsis thaliana HOM05D004814 ORTHO05D005778 9.2e-57 224.2 207 64.7
Ciclev10009615m.g Citrus clementina HOM05D004814 ORTHO05D005778 1.2e-56 223.8 207 64.3
Atru.chr2.3664 Acer truncatum HOM05D004814 ORTHO05D005778 1.6e-56 223.4 205 64.9
BcaNung05270 Brassica carinata HOM05D004814 ORTHO05D005778 1.6e-56 223.4 208 65.9
THA.LOC104815700 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 1.6e-56 223.4 211 63.0
CARHR087710 Cardamine hirsuta HOM05D004814 ORTHO05D005778 2.1e-56 223.0 202 65.3
Sc16g0007970 Simmondsia chinensis HOM05D004814 ORTHO05D005778 2.1e-56 223.0 202 63.9
Sopen10g001990 Solanum pennellii HOM05D004814 ORTHO05D005778 2.1e-56 223.0 200 64.5
PGSC0003DMG400014378 Solanum tuberosum HOM05D004814 ORTHO05D005778 2.7e-56 222.6 200 64.5
C03p46130 Brassica napus HOM05D004814 ORTHO05D005778 3.5e-56 222.2 206 64.6
BcaC01g04010 Brassica carinata HOM05D004814 ORTHO05D005778 4.6e-56 221.9 206 64.1
BolC3t16886H Brassica oleracea HOM05D004814 ORTHO05D005778 4.6e-56 221.9 206 64.1
CAN.G492.31 Capsicum annuum HOM05D004814 ORTHO05D005778 4.6e-56 221.9 206 63.6
Sp3g11290 Schrenkiella parvula HOM05D004814 ORTHO05D005778 4.6e-56 221.9 208 63.9
A01p40420 Brassica napus HOM05D004814 ORTHO05D005778 7.8e-56 221.1 211 63.5
A03p38040 Brassica napus HOM05D004814 ORTHO05D005778 7.8e-56 221.1 207 64.3
BraA01t04077Z Brassica rapa HOM05D004814 ORTHO05D005778 7.8e-56 221.1 211 63.5
Cc05_g14790 Coffea canephora HOM05D004814 ORTHO05D005778 1.0e-55 220.7 206 62.1
BraA05t22442Z Brassica rapa HOM05D004814 ORTHO05D005778 1.3e-55 220.3 206 64.6
Solyc10g006030.3 Solanum lycopersicum HOM05D004814 ORTHO05D005778 1.3e-55 220.3 199 65.8
BcaC05g29209 Brassica carinata HOM05D004814 ORTHO05D005778 1.7e-55 219.9 209 64.1
C05p54820 Brassica napus HOM05D004814 ORTHO05D005778 1.7e-55 219.9 209 64.1
BolC5t34154H Brassica oleracea HOM05D004814 ORTHO05D005778 1.7e-55 219.9 209 64.1
Oeu049351.1 Olea europaea HOM05D004814 ORTHO05D005778 1.7e-55 219.9 204 64.2
BcaB06g25486 Brassica carinata HOM05D004814 ORTHO05D005778 2.3e-55 219.5 202 64.9
THA.LOC104822735 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 2.3e-55 219.5 209 63.6
A05p36420 Brassica napus HOM05D004814 ORTHO05D005778 3.0e-55 219.2 206 64.6
Rhsim06G0227300 Rhododendron simsii HOM05D004814 ORTHO05D005778 3.0e-55 219.2 204 62.3
THA.LOC104810287 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 8.6e-55 217.6 208 65.9
Nitab4.5_0006756g0010 Nicotiana tabacum HOM05D004814 ORTHO05D005778 1.1e-54 217.2 202 62.4
Lsat_1_v5_gn_9_90400 Lactuca sativa HOM05D004814 ORTHO05D005778 1.5e-54 216.9 199 60.8
A01p40680 Brassica napus HOM05D004814 ORTHO05D005778 7.3e-54 214.5 202 63.9
Nitab4.5_0003491g0010 Nicotiana tabacum HOM05D004814 ORTHO05D005778 9.5e-54 214.2 202 62.4
Peaxi162Scf00900g00010 Petunia axillaris HOM05D004814 ORTHO05D005778 1.2e-53 213.8 152 74.3
Eucgr.F03697 Eucalyptus grandis HOM05D004814 ORTHO05D005778 1.6e-53 213.4 206 61.7
MSTRG.14478 Avicennia marina HOM05D004814 ORTHO05D005778 2.8e-53 212.6 204 63.7
HanXRQChr03g0061321 Helianthus annuus HOM05D004814 ORTHO05D005778 2.8e-53 212.6 205 61.0
CSS0019029 Camellia sinensis var. sinensis HOM05D004814 ORTHO05D005778 1.1e-52 210.7 124 84.7
SGA_v2.0_scaffold8G04398 Striga asiatica HOM05D004814 ORTHO05D005778 2.3e-52 209.5 202 62.4
Aa31LG10G250 Aethionema arabicum HOM05D004814 ORTHO05D005778 3.1e-52 209.1 206 62.6
ECA240G4731 Erigeron canadensis HOM05D001580 ORTHO05D001517 4.0e-52 208.8 148 70.9
unitig_62.g23297 Utricularia gibba HOM05D004814 ORTHO05D005778 8.9e-52 207.6 202 60.4
Actinidia05024 Actinidia chinensis HOM05D004814 ORTHO05D005778 1.5e-51 206.8 202 61.4
HanXRQChr13g0408121 Helianthus annuus HOM05D004814 ORTHO05D005778 4.4e-51 205.3 203 58.1
CDE10G1086 Ceratophyllum demersum HOM05D004814 ORTHO05D005778 5.8e-51 204.9 109 89.9
Lj1P888T30 Lonicera japonica HOM05D004814 ORTHO05D005778 1.7e-50 203.4 104 94.2
HPP92_020399 Vanilla planifolia HOM05D004814 ORTHO05D005778 2.9e-50 202.6 201 60.2
VMungo0248G0001 Vigna mungo HOM05D004814 ORTHO05D005778 2.9e-50 202.6 104 93.3
Cpa.g.sc12.175 Carica papaya HOM05D004814 ORTHO05D005778 6.4e-50 201.4 104 93.3
ATR0624G087 Amborella trichopoda HOM05D004814 ORTHO05D005778 1.4e-49 200.3 104 92.3
BraA01t04102Z Brassica rapa HOM05D004814 ORTHO05D005778 6.0e-48 194.9 104 90.4
QL05p065674 Quercus lobata HOM05D004814 ORTHO05D005778 1.0e-47 194.1 110 89.1
Zm00001eb401060 Zea mays HOM05D004814 ORTHO05D005778 1.0e-47 194.1 112 81.2
Zm00001eb008100 Zea mays HOM05D004814 ORTHO05D005778 8.6e-47 191.0 206 56.3
Os03g0196800 Oryza sativa ssp. japonica HOM05D004814 ORTHO05D005778 3.3e-46 189.1 202 55.4
C01p51960 Brassica napus HOM05D004814 ORTHO05D005778 1.6e-45 186.8 154 63.0
QL05p065593 Quercus lobata HOM05D004814 ORTHO05D005778 1.1e-44 184.1 103 89.3
MBI19_g45743_MAGBIO Magnolia biondii HOM05D004814 ORTHO05D005778 6.8e-44 181.4 100 85.0
PSO832G2117 Papaver somniferum HOM05D004814 ORTHO05D005778 3.8e-42 175.6 208 53.8
Pp3c24_19230 Physcomitrium patens HOM05D004814 ORTHO05D005778 1.9e-41 173.3 122 68.0
Pp3c20_8830 Physcomitrium patens HOM05D004814 ORTHO05D005778 5.4e-41 171.8 142 62.7
Pp3c8_18990 Physcomitrium patens HOM05D004814 ORTHO05D005778 7.1e-41 171.4 122 68.0
AagrBONN_evm.TU.Sc2ySwM_117.1321 Anthoceros agrestis HOM05D004814 ORTHO05D005778 3.5e-40 169.1 124 68.5
Mapoly0009s0107 Marchantia polymorpha HOM05D004814 ORTHO05D005778 7.3e-38 161.4 202 48.5
SEGI_32296 Sequoiadendron giganteum HOM05D004814 ORTHO05D005778 5.3e-36 155.2 101 73.3
CBR_g19640 Chara braunii HOM05D004814 ORTHO05D005778 7.1e-33 144.8 211 45.5
MSTRG.13015 Avicennia marina HOM05D004814 ORTHO05D005778 4.6e-32 142.1 157 56.7
SMO228G0012 Selaginella moellendorffii HOM05D004814 ORTHO05D005778 3.0e-31 139.4 102 61.8
MCO07G521 Micromonas commoda HOM05D004814 ORTHO05D005778 1.6e-29 133.7 118 55.1
PRCOL_00000430 Prasinoderma coloniale HOM05D004814 ORTHO05D005778 5.1e-23 112.1 100 54.0
Cre03.g195650 Chlamydomonas reinhardtii HOM05D004814 ORTHO05D005778 4.0e-20 102.4 133 41.4
VMungo0540G0735 Vigna mungo HOM05D004814 ORTHO05D005778 6.2e-13 78.6 105 56.2
vmacro17432 Vaccinium macrocarpon HOM05D004814 ORTHO05D005778 6.1e-08 62.0 204 31.9


User provided reference genes

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