Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_19938_v3 Cicer arietinum L. HOM05D004324 ORTHO05D004840 6.2e-191 670.6 339 100.0
TPR.G7599 Trifolium pratense HOM05D004324 ORTHO05D004840 3.9e-185 651.4 339 97.1
Lj3g0015076 Lotus japonicus HOM05D004324 ORTHO05D004840 1.1e-182 643.3 339 95.0
Glyma.01G140200 Glycine max HOM05D004324 ORTHO05D004840 1.1e-179 633.3 339 94.4
Glyma.17G131300 Glycine max HOM05D004324 ORTHO05D004840 1.6e-178 629.4 339 94.4
Phvul.010G081600 Phaseolus vulgaris HOM05D004324 ORTHO05D004840 1.6e-178 629.4 339 93.8
Psat0s3070g0160 Pisum sativum HOM05D004324 ORTHO05D004840 4.6e-178 627.9 339 92.9
Cpa.g.sc145.18 Carica papaya HOM05D004324 ORTHO05D004840 2.6e-173 612.1 339 89.4
Lalb_Chr12g0208141 Lupinus albus HOM05D004324 ORTHO05D004840 2.2e-172 609.0 339 89.4
RcHm_v2.0_Chr1g0349771 Rosa chinensis HOM05D004324 ORTHO05D004840 5.0e-172 607.8 339 90.0
CiPaw.01G263900 Carya illinoinensis HOM05D004324 ORTHO05D004840 6.5e-172 607.4 339 88.8
Thecc.08G173500 Theobroma cacao HOM05D004324 ORTHO05D004840 1.1e-171 606.7 340 89.1
FAN03G2758 Fragaria x ananassa HOM05D004324 ORTHO05D004840 5.5e-171 604.4 339 89.4
FAN06G1729 Fragaria x ananassa HOM05D004324 ORTHO05D004840 5.5e-171 604.4 339 89.4
FAN06G4220 Fragaria x ananassa HOM05D004324 ORTHO05D004840 5.5e-171 604.4 339 89.4
Manes.05G047100 Manihot esculenta HOM05D004324 ORTHO05D004840 5.5e-171 604.4 339 88.8
Prupe.2G142300 Prunus persica HOM05D004324 ORTHO05D004840 5.5e-171 604.4 339 87.3
MD07G1119200 Malus domestica HOM05D004324 ORTHO05D004840 7.2e-171 604.0 339 88.8
Nn1g01122 Nelumbo nucifera HOM05D004324 ORTHO05D004840 1.2e-170 603.2 339 88.2
FAN01G0081 Fragaria x ananassa HOM05D004324 ORTHO05D004840 2.7e-170 602.1 339 89.1
PGR042G0702 Punica granatum HOM05D004324 ORTHO05D004840 2.7e-170 602.1 339 87.6
Ciclev10021006m.g Citrus clementina HOM05D004324 ORTHO05D004840 6.1e-170 600.9 336 89.0
Eucgr.E01445 Eucalyptus grandis HOM05D004324 ORTHO05D004840 6.1e-170 600.9 339 87.9
Gorai.009G265900 Gossypium raimondii HOM05D004324 ORTHO05D004840 1.0e-169 600.1 338 87.6
Manes.01G267300 Manihot esculenta HOM05D004324 ORTHO05D004840 1.0e-169 600.1 339 87.6
Gohir.D05G254400 Gossypium hirsutum HOM05D004324 ORTHO05D004840 2.3e-169 599.0 338 87.3
Duzib268G1605 Durio zibethinus HOM05D004324 ORTHO05D004840 3.0e-169 598.6 336 88.4
Duzib177G0253 Durio zibethinus HOM05D004324 ORTHO05D004840 5.1e-169 597.8 338 87.3
Sc26g0001240 Simmondsia chinensis HOM05D004324 ORTHO05D004840 5.1e-169 597.8 339 87.3
THA.LOC104826515 Tarenaya hassleriana HOM05D004324 ORTHO05D004840 6.7e-169 597.4 339 87.9
QL08p052832 Quercus lobata HOM05D004324 ORTHO05D004840 1.5e-168 596.3 338 87.9
EL10Ac1g00868 Beta vulgaris HOM05D004324 ORTHO05D004840 2.0e-168 595.9 339 86.7
Dinv32365 Davidia involucrata HOM05D004324 ORTHO05D004840 2.6e-168 595.5 339 86.7
GSVIVG01027662001 Vitis vinifera HOM05D004324 ORTHO05D004840 2.6e-168 595.5 338 86.7
COL.COLO4_24610 Corchorus olitorius HOM05D004324 ORTHO05D004840 7.4e-168 594.0 336 87.2
SalBow5G2819 Salvia bowleyana HOM05D004324 ORTHO05D004840 7.4e-168 594.0 339 86.1
Aa31LG9G14610 Aethionema arabicum HOM05D004324 ORTHO05D004840 2.2e-167 592.4 341 86.8
Hma1.2p1_0442F.1_g153860 Hydrangea macrophylla HOM05D004324 ORTHO05D004840 2.2e-167 592.4 337 86.4
Atru.chr5.282 Acer truncatum HOM05D004324 ORTHO05D004840 2.8e-167 592.0 338 86.4
vmacro13417 Vaccinium macrocarpon HOM05D004324 ORTHO05D004840 3.7e-167 591.7 339 85.5
ClCG06G000480 Citrullus lanatus HOM05D004324 ORTHO05D004840 6.3e-167 590.9 339 85.3
Migut.B01616 Erythranthe guttata HOM05D004324 ORTHO05D004840 6.3e-167 590.9 339 85.5
MSTRG.17174 Avicennia marina HOM05D004324 ORTHO05D004840 8.2e-167 590.5 339 85.5
CANSAT56G0022 Cannabis sativa HOM05D004324 ORTHO05D004840 1.4e-166 589.7 339 86.7
Potri.002G146200 Populus trichocarpa HOM05D004324 ORTHO05D004840 1.8e-166 589.3 339 86.7
Sp6g08900 Schrenkiella parvula HOM05D004324 ORTHO05D004840 1.8e-166 589.3 339 86.7
Nitab4.5_0000457g0100 Nicotiana tabacum HOM05D004324 ORTHO05D004840 3.1e-166 588.6 339 85.0
TAR375G0703 Trochodendron aralioides HOM05D004324 ORTHO05D004840 3.1e-166 588.6 339 85.8
Actinidia12245 Actinidia chinensis HOM05D004324 ORTHO05D004840 6.9e-166 587.4 339 85.5
Cc02_g24110 Coffea canephora HOM05D004324 ORTHO05D004840 6.9e-166 587.4 339 85.8
ECA234G2725 Erigeron canadensis HOM05D004324 ORTHO05D004840 6.9e-166 587.4 339 85.8
TWI59G0845 Tripterygium wilfordii HOM05D004324 ORTHO05D004840 6.9e-166 587.4 339 86.1
Nitab4.5_0010616g0050 Nicotiana tabacum HOM05D004324 ORTHO05D004840 9.1e-166 587.0 339 84.7
CsaV3_6G006290 Cucumis sativus L. HOM05D004324 ORTHO05D004840 1.2e-165 586.6 339 85.0
Hund27368 Selenicereus undatus HOM05D004324 ORTHO05D004840 1.5e-165 586.3 328 87.5
Thecc.08G173700 Theobroma cacao HOM05D004324 ORTHO05D004840 2.0e-165 585.9 340 84.4
HanXRQChr16g0519961 Helianthus annuus HOM05D004324 ORTHO05D004840 2.6e-165 585.5 334 87.1
Peaxi162Scf00013g03018 Petunia axillaris HOM05D004324 ORTHO05D004840 3.4e-165 585.1 339 84.4
BcaB01g02843 Brassica carinata HOM05D004324 ORTHO05D004840 7.7e-165 583.9 342 86.5
Sopen01g036910 Solanum pennellii HOM05D004324 ORTHO05D004840 7.7e-165 583.9 339 84.4
CDE04G0300 Ceratophyllum demersum HOM05D004324 ORTHO05D004840 1.0e-164 583.6 327 87.5
Potri.014G067700 Populus trichocarpa HOM05D004324 ORTHO05D004840 1.0e-164 583.6 333 87.1
Solyc01g091160.4 Solanum lycopersicum HOM05D004324 ORTHO05D004840 1.0e-164 583.6 339 84.4
unitig_899.g15094 Utricularia gibba HOM05D004324 ORTHO05D004840 1.3e-164 583.2 328 86.9
AT4G08900 Arabidopsis thaliana HOM05D004324 ORTHO05D004840 1.7e-164 582.8 339 86.1
AL6G41660 Arabidopsis lyrata HOM05D004324 ORTHO05D004840 3.8e-164 581.6 339 85.8
BcaC01g04748 Brassica carinata HOM05D004324 ORTHO05D004840 3.8e-164 581.6 342 85.7
PSO782G5694 Papaver somniferum HOM05D004324 ORTHO05D004840 3.8e-164 581.6 339 85.3
CARHR259850 Cardamine hirsuta HOM05D004324 ORTHO05D004840 5.0e-164 581.3 339 85.8
Lsat_1_v5_gn_4_43080 Lactuca sativa HOM05D004324 ORTHO05D004840 8.5e-164 580.5 339 85.0
Oeu055504.4 Olea europaea HOM05D004324 ORTHO05D004840 8.5e-164 580.5 376 79.0
A03p28290 Brassica napus HOM05D004324 ORTHO05D004840 1.1e-163 580.1 339 86.1
Aqoxy7G00682 Aquilegia oxysepala HOM05D004324 ORTHO05D004840 1.4e-163 579.7 337 85.5
BraA03t12035Z Brassica rapa HOM05D004324 ORTHO05D004840 1.9e-163 579.3 339 86.1
C03p34220 Brassica napus HOM05D004324 ORTHO05D004840 2.5e-163 578.9 342 85.4
Rhsim07G0029000 Rhododendron simsii HOM05D004324 ORTHO05D004840 2.5e-163 578.9 362 80.7
BolC3t15731H Brassica oleracea HOM05D004324 ORTHO05D004840 5.5e-163 577.8 342 85.1
AUR62013655 Chenopodium quinoa HOM05D004324 ORTHO05D004840 5.5e-163 577.8 339 82.0
Os04g0106300 Oryza sativa ssp. japonica HOM05D004324 ORTHO05D004840 5.5e-163 577.8 333 86.2
SGA_v2.0_scaffold153G36989 Striga asiatica HOM05D004324 ORTHO05D004840 9.4e-163 577.0 339 83.8
HPP92_007375 Vanilla planifolia HOM05D004324 ORTHO05D004840 9.4e-163 577.0 333 83.8
Sed0016777 Sechium edule HOM05D004324 ORTHO05D004840 1.2e-162 576.6 339 83.8
Carub.0006s2738 Capsella rubella HOM05D004324 ORTHO05D004840 1.6e-162 576.2 339 85.5
PSO478G0881 Papaver somniferum HOM05D004324 ORTHO05D004840 1.6e-162 576.2 339 84.7
CAN.G388.33 Capsicum annuum HOM05D004324 ORTHO05D004840 2.7e-162 575.5 338 83.1
Thhalv10028793m.g Eutrema salsugineum HOM05D004324 ORTHO05D004840 2.7e-162 575.5 339 85.5
DCAR_008551 Daucus carota HOM05D004324 ORTHO05D004840 3.6e-162 575.1 328 85.7
RcHm_v2.0_Chr1g0349751 Rosa chinensis HOM05D004324 ORTHO05D004840 3.6e-162 575.1 338 85.5
SHI13535 Sapria himalayana HOM05D004324 ORTHO05D004840 8.0e-162 573.9 332 84.9
arahy.Tifrunner.gnm1.ann1.2VF8XD Arachis hypogaea HOM05D004324 ORTHO05D004840 1.8e-161 572.8 367 80.1
Sc26g0001250 Simmondsia chinensis HOM05D004324 ORTHO05D004840 3.0e-161 572.0 339 83.8
ATR0665G432 Amborella trichopoda HOM05D004324 ORTHO05D004840 3.9e-161 571.6 333 85.3
AUR62004190 Chenopodium quinoa HOM05D004324 ORTHO05D004840 1.1e-160 570.1 339 80.8
CSS0015452 Camellia sinensis var. sinensis HOM05D004324 ORTHO05D004840 2.8e-159 565.5 339 82.0
CSS0042374 Camellia sinensis var. sinensis HOM05D004324 ORTHO05D004840 2.8e-159 565.5 339 82.0
CiPaw.02G169300 Carya illinoinensis HOM05D004324 ORTHO05D004840 1.1e-158 563.5 328 85.1
arahy.Tifrunner.gnm1.ann1.J6F3FE Arachis hypogaea HOM05D004324 ORTHO05D004840 1.4e-158 563.1 394 75.4
Sopen01g036920 Solanum pennellii HOM05D004324 ORTHO05D004840 1.4e-158 563.1 339 81.1
Solyc01g091170.3 Solanum lycopersicum HOM05D004324 ORTHO05D004840 3.1e-158 562.0 339 80.8
Lj3g0002034 Lotus japonicus HOM05D004324 ORTHO05D004840 1.2e-157 560.1 339 80.8
CSS0002473 Camellia sinensis var. sinensis HOM05D004324 ORTHO05D004840 7.7e-157 557.4 315 87.0
Lj3g0008609 Lotus japonicus HOM05D004324 ORTHO05D004840 1.2e-154 550.1 339 79.9
AT4G08870 Arabidopsis thaliana HOM05D004324 ORTHO05D004840 8.0e-154 547.4 345 78.8
Haze_16793 Corylus avellana HOM05D004324 ORTHO05D004840 1.0e-153 547.0 351 80.1
Medtr4g024960 Medicago truncatula HOM05D004324 ORTHO05D004840 3.3e-152 542.0 339 79.4
Mapoly0082s0038 Marchantia polymorpha HOM05D004324 ORTHO05D004840 7.5e-152 540.8 322 80.4
Carub.0006s2736 Capsella rubella HOM05D004324 ORTHO05D004840 1.3e-151 540.0 345 77.1
SEGI_09298 Sequoiadendron giganteum HOM05D004324 ORTHO05D004840 1.3e-151 540.0 339 78.5
TPR.G7597 Trifolium pratense HOM05D004324 ORTHO05D004840 5.9e-149 531.2 343 78.1
Glyma.03G028000 Glycine max HOM05D004324 ORTHO05D004840 3.8e-148 528.5 339 75.8
Lj3g0012371 Lotus japonicus HOM05D004324 ORTHO05D004840 4.2e-147 525.0 338 75.4
Ah.05g174550 Amaranthus hybridus HOM05D004324 ORTHO05D004840 2.7e-146 522.3 339 74.6
Lj7A531T56 Lonicera japonica HOM05D004324 ORTHO05D004840 6.8e-145 517.7 339 78.2
SMO367G0287 Selaginella moellendorffii HOM05D004324 ORTHO05D004840 3.5e-141 505.4 334 75.4
Pp3c5_2190 Physcomitrium patens HOM05D004324 ORTHO05D004840 2.3e-137 492.7 313 76.7
HanXRQChr16g0519941 Helianthus annuus HOM05D004324 ORTHO05D004840 3.8e-132 475.3 336 70.5
CBR_g50887 Chara braunii HOM05D004324 ORTHO05D004840 1.0e-129 467.2 322 71.4
Medtr4g024940 Medicago truncatula HOM05D004324 ORTHO05D004840 4.7e-122 441.8 231 96.5
Psat7g231720 Pisum sativum HOM05D004324 ORTHO05D004840 4.7e-122 441.8 342 64.0
Dinv43690 Davidia involucrata HOM05D004324 ORTHO05D004840 8.0e-122 441.0 339 69.9
COL.COLO4_24608 Corchorus olitorius HOM05D004324 ORTHO05D004840 6.4e-119 431.4 333 66.7
Sed0023731 Sechium edule HOM05D004324 ORTHO05D004840 2.1e-117 426.4 252 82.1
MELO3C022492.2 Cucumis melo HOM05D004324 ORTHO05D004840 7.3e-115 417.9 239 85.4
Atru.chr5.284 Acer truncatum HOM05D004324 ORTHO05D004840 1.2e-114 417.2 251 81.7
arahy.Tifrunner.gnm1.ann1.J17N2W Arachis hypogaea HOM05D004324 ORTHO05D004840 1.3e-111 407.1 329 66.0
SEGI_04392 Sequoiadendron giganteum HOM05D004324 ORTHO05D004840 1.9e-107 393.3 249 77.5
Hma1.2p1_0375F.1_g138670 Hydrangea macrophylla HOM05D004324 ORTHO05D004840 2.8e-106 389.4 248 78.2
FvH4_7g11450 Fragaria vesca HOM05D004324 ORTHO05D004840 3.8e-103 379.0 219 85.8
Zm00001eb418690 Zea mays HOM05D004324 ORTHO05D004840 2.3e-100 369.8 208 87.0
MBI04_g35670_MAGBIO Magnolia biondii HOM05D004324 ORTHO05D004840 1.5e-99 367.1 220 80.9
Psat6g218040 Pisum sativum HOM05D004324 ORTHO05D004840 3.2e-94 349.4 326 56.1
AL6G42680 Arabidopsis lyrata HOM05D004324 ORTHO05D004840 4.3e-91 339.0 193 85.0
Gohir.A05G252532 Gossypium hirsutum HOM05D004324 ORTHO05D004840 1.6e-90 337.0 192 85.4
Medtr0088s0100 Medicago truncatula HOM05D004324 ORTHO05D004840 2.2e-87 326.6 332 54.2
AagrBONN_evm.TU.Sc2ySwM_368.1743 Anthoceros agrestis HOM05D004324 ORTHO05D004840 6.4e-87 325.1 200 79.0
SGA_v2.0_scaffold11G05569 Striga asiatica HOM05D004324 ORTHO05D004840 6.7e-76 288.5 242 62.0
Psat6g218080 Pisum sativum HOM05D004324 ORTHO05D004840 1.1e-73 281.2 195 67.2
Sc26g0001270 Simmondsia chinensis HOM05D004324 ORTHO05D004840 4.5e-72 275.8 170 79.4
RcHm_v2.0_Chr1g0349761 Rosa chinensis HOM05D004324 ORTHO05D004840 1.8e-65 253.8 145 86.9
Gohir.A05G252466 Gossypium hirsutum HOM05D004324 ORTHO05D004840 1.0e-63 248.1 135 90.4
AL6G42730 Arabidopsis lyrata HOM05D004324 ORTHO05D004840 7.9e-53 211.8 151 70.2
Psat6g217960 Pisum sativum HOM05D004324 ORTHO05D004840 1.1e-51 208.0 155 65.2
CDE02G4314 Ceratophyllum demersum HOM05D004324 ORTHO05D004840 1.1e-43 181.4 148 66.2
arahy.Tifrunner.gnm1.ann1.V33WN8 Arachis hypogaea HOM05D004324 ORTHO05D004840 9.1e-41 171.8 87 96.6
Actinidia02863 Actinidia chinensis HOM05D004324 ORTHO05D004840 2.7e-37 160.2 103 75.7
Duzib177G0443 Durio zibethinus HOM05D004324 ORTHO05D004840 4.1e-33 146.4 101 76.2
SEGI_10460 Sequoiadendron giganteum HOM05D004324 ORTHO05D004840 7.0e-33 145.6 104 71.2
MD02G1206500 Malus domestica HOM05D004324 ORTHO05D004840 1.3e-31 141.4 74 90.5
CAN.G112.16 Capsicum annuum HOM05D004324 ORTHO05D004840 5.0e-31 139.4 87 79.3
MD02G1206600 Malus domestica HOM05D004324 ORTHO05D004840 1.5e-30 137.9 96 70.8
CAN.G23.23 Capsicum annuum HOM05D004324 ORTHO05D004840 5.5e-30 136.0 78 82.1
Duzib106G1980 Durio zibethinus HOM05D004324 ORTHO05D004840 1.4e-25 121.3 89 69.7
Sc26g0001260 Simmondsia chinensis HOM05D004324 ORTHO05D004840 4.2e-22 109.8 127 52.0
Pp3s30_709 Physcomitrium patens HOM05D004324 ORTHO05D004840 6.8e-20 102.4 236 32.2
Actinidia02867 Actinidia chinensis HOM05D004324 ORTHO05D004840 1.5e-19 101.3 108 52.8
Prupe.7G087800 Prunus persica HOM05D004324 ORTHO05D004840 2.0e-19 100.9 124 53.2
Cfa025533 Carpinus fangiana HOM05D000146 ORTHO05D004840 3.4e-19 100.1 323 27.2
Actinidia31395 Actinidia chinensis HOM05D004324 ORTHO05D004840 7.5e-19 99.0 77 64.9
Psat0s13993g0040 Pisum sativum HOM05D004324 ORTHO05D004840 2.2e-18 97.4 74 66.2
MCO07G634 Micromonas commoda HOM05D004324 ORTHO05D004840 7.0e-17 92.4 300 28.3
Ca_28979_v3 Cicer arietinum L. HOM05D004324 ORTHO05D004840 2.9e-15 87.0 278 28.4
Cfa023222 Carpinus fangiana HOM05D004324 ORTHO05D004840 5.0e-15 86.3 271 29.2
Cfa024978 Carpinus fangiana HOM05D004324 ORTHO05D034102 4.0e-12 76.6 251 27.5
Medtr4g019730 Medicago truncatula HOM05D000814 ORTHO05D004840 3.4e-11 73.6 43 79.1
Actinidia02866 Actinidia chinensis HOM05D004324 ORTHO05D004840 4.1e-09 66.6 103 43.7
Prupe.2G076400 Prunus persica HOM05D004324 ORTHO05D004840 5.4e-09 66.2 52 65.4
Aa31sc49G50 Aethionema arabicum HOM05D004324 ORTHO05D004840 4.6e-08 63.2 45 68.9


User provided reference genes

Program Settings