Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_19329_v3 Cicer arietinum L. HOM05D004020 ORTHO05D004735 0.0e+00 2177.5 1126 100.0
TPR.G35043 Trifolium pratense HOM05D004020 ORTHO05D004735 0.0e+00 1967.2 1126 90.7
Psat7g191400 Pisum sativum HOM05D004020 ORTHO05D004735 0.0e+00 1958.0 1126 90.7
Medtr4g056510 Medicago truncatula HOM05D004020 ORTHO05D004735 0.0e+00 1926.0 1128 89.1
Lj3g0000902 Lotus japonicus HOM05D004020 ORTHO05D004735 0.0e+00 1909.4 1136 88.1
Glyma.11G191100 Glycine max HOM05D004020 ORTHO05D004735 0.0e+00 1892.1 1129 87.2
Glyma.12G083200 Glycine max HOM05D004020 ORTHO05D004735 0.0e+00 1889.4 1133 86.8
Phvul.011G088000 Phaseolus vulgaris HOM05D004020 ORTHO05D004735 0.0e+00 1802.3 1126 83.7
Lalb_Chr01g0004661 Lupinus albus HOM05D004020 ORTHO05D004735 0.0e+00 1783.1 1126 82.6
Lalb_Chr19g0136831 Lupinus albus HOM05D004020 ORTHO05D004735 0.0e+00 1774.6 1129 82.3
arahy.Tifrunner.gnm1.ann1.MMVL4X Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1622.4 1128 76.2
arahy.Tifrunner.gnm1.ann1.533Y7U Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1618.2 1137 75.5
Cfa010130 Carpinus fangiana HOM05D004020 ORTHO05D004735 0.0e+00 1598.2 1138 73.6
CiPaw.14G105600 Carya illinoinensis HOM05D004020 ORTHO05D004735 0.0e+00 1568.1 1137 72.6
Thecc.09G295800 Theobroma cacao HOM05D004020 ORTHO05D004735 0.0e+00 1545.8 1137 71.9
Manes.11G154000 Manihot esculenta HOM05D004020 ORTHO05D004735 0.0e+00 1530.0 1141 71.3
RcHm_v2.0_Chr5g0056331 Rosa chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1525.0 1136 71.9
FvH4_3g30380 Fragaria vesca HOM05D004020 ORTHO05D004735 0.0e+00 1515.0 1136 71.3
TWI75G0197 Tripterygium wilfordii HOM05D004020 ORTHO05D004735 0.0e+00 1515.0 1146 71.2
MELO3C004814.2 Cucumis melo HOM05D004020 ORTHO05D004735 0.0e+00 1514.2 1131 70.6
Atru.chr3.3492 Acer truncatum HOM05D004020 ORTHO05D004735 0.0e+00 1511.9 1151 70.3
Gorai.009G089000 Gossypium raimondii HOM05D004020 ORTHO05D004735 0.0e+00 1511.1 1135 71.5
Prupe.6G114700 Prunus persica HOM05D004020 ORTHO05D004735 0.0e+00 1507.7 1135 70.7
MD11G1151500 Malus domestica HOM05D004020 ORTHO05D004735 0.0e+00 1506.9 1133 70.8
Duzib168G0446 Durio zibethinus HOM05D004020 ORTHO05D004735 0.0e+00 1501.5 1135 70.8
FAN11G1674 Fragaria x ananassa HOM05D004020 ORTHO05D004735 0.0e+00 1498.4 1158 69.8
FAN21G0469 Fragaria x ananassa HOM05D004020 ORTHO05D004735 0.0e+00 1498.0 1129 70.9
TAR633G0695 Trochodendron aralioides HOM05D004020 ORTHO05D004735 0.0e+00 1496.9 1146 69.5
Ciclev10027713m.g Citrus clementina HOM05D004020 ORTHO05D004735 0.0e+00 1496.5 1136 70.5
COL.COLO4_19229 Corchorus olitorius HOM05D004020 ORTHO05D004735 0.0e+00 1495.7 1137 70.1
CsaV3_1G014440 Cucumis sativus L. HOM05D004020 ORTHO05D004735 0.0e+00 1494.9 1132 70.2
Sed0021294 Sechium edule HOM05D004020 ORTHO05D004735 0.0e+00 1493.0 1128 70.3
Potri.009G002900 Populus trichocarpa HOM05D004020 ORTHO05D004735 0.0e+00 1491.9 1144 70.4
Potri.001G212600 Populus trichocarpa HOM05D004020 ORTHO05D004735 0.0e+00 1484.5 1140 70.4
MD03G1129700 Malus domestica HOM05D004020 ORTHO05D004735 0.0e+00 1484.2 1131 69.8
Sabra04G0148500 Salix brachista HOM05D004020 ORTHO05D004735 0.0e+00 1483.8 1140 70.4
Gohir.D05G087200 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1474.1 1135 69.9
CSS0033419 Camellia sinensis var. sinensis HOM05D004020 ORTHO05D004735 0.0e+00 1462.2 1138 68.8
Gohir.A05G084400 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1454.5 1147 69.1
Duzib150G0506 Durio zibethinus HOM05D004020 ORTHO05D004735 0.0e+00 1454.1 1138 69.3
Actinidia07194 Actinidia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1452.2 1140 68.6
Gohir.D07G110000 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1451.0 1134 67.9
Rhsim13G0102300 Rhododendron simsii HOM05D004020 ORTHO05D004735 0.0e+00 1429.5 1162 65.9
THA.LOC104826398 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 0.0e+00 1425.6 1139 67.9
Actinidia24157 Actinidia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1424.8 1138 67.7
arahy.Tifrunner.gnm1.ann1.B084HG Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1415.6 936 79.2
PGR102G0426 Punica granatum HOM05D004020 ORTHO05D004735 0.0e+00 1415.2 1126 67.7
Aa31LG5G8160 Aethionema arabicum HOM05D004020 ORTHO05D004735 0.0e+00 1411.0 1137 66.2
arahy.Tifrunner.gnm1.ann1.PN7A9Z Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1408.7 936 79.2
AL4G22350 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 0.0e+00 1395.6 1140 66.1
AT2G27900 Arabidopsis thaliana HOM05D004020 ORTHO05D004735 0.0e+00 1395.6 1141 66.0
Carub.0004s0864 Capsella rubella HOM05D004020 ORTHO05D004735 0.0e+00 1393.6 1148 65.7
THA.LOC104800567 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 0.0e+00 1390.2 1141 66.1
Sp4g10720 Schrenkiella parvula HOM05D004020 ORTHO05D004735 0.0e+00 1384.8 1141 64.9
BcaB01g03084 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1384.4 1144 66.0
Thhalv10016162m.g Eutrema salsugineum HOM05D004020 ORTHO05D004735 0.0e+00 1379.0 1141 65.6
GSVIVG01031444001 Vitis vinifera HOM05D004020 ORTHO05D004735 0.0e+00 1377.5 1086 68.6
Aqoxy2G01562 Aquilegia oxysepala HOM05D004020 ORTHO05D004735 0.0e+00 1371.7 1092 67.0
A03p26460 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1366.3 1146 65.1
Nn2g13902 Nelumbo nucifera HOM05D004020 ORTHO05D004735 0.0e+00 1365.1 1145 64.4
BcaC01g04955 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1355.5 1142 64.5
C03p31750 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1354.7 1141 64.9
PSO801G0568 Papaver somniferum HOM05D004020 ORTHO05D004735 0.0e+00 1351.7 1094 65.9
Sopen11g026290 Solanum pennellii HOM05D004020 ORTHO05D004735 0.0e+00 1349.0 1117 65.9
PSO339G0247 Papaver somniferum HOM05D004020 ORTHO05D004735 0.0e+00 1346.6 1094 65.5
BolC3t15517H Brassica oleracea HOM05D004020 ORTHO05D004735 0.0e+00 1344.7 1148 64.2
vmacro03245 Vaccinium macrocarpon HOM05D004020 ORTHO05D004735 0.0e+00 1337.8 1206 60.9
CAN.G644.49 Capsicum annuum HOM05D004020 ORTHO05D004735 0.0e+00 1335.5 1128 65.2
EL10Ac9g20998 Beta vulgaris HOM05D004020 ORTHO05D004735 0.0e+00 1330.9 1153 62.6
Cc01_g10110 Coffea canephora HOM05D004020 ORTHO05D004735 0.0e+00 1328.2 1092 65.5
Sc06g0008980 Simmondsia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1322.4 1112 64.7
BraA04t17688Z Brassica rapa HOM05D004020 ORTHO05D004735 0.0e+00 1315.4 1089 64.9
Nitab4.5_0000173g0340 Nicotiana tabacum HOM05D004020 ORTHO05D004735 0.0e+00 1312.4 1156 62.7
MSTRG.18711 Avicennia marina HOM05D004020 ORTHO05D004735 0.0e+00 1304.3 1145 62.2
A04p21190 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1300.4 1089 64.7
BolC4t27237H Brassica oleracea HOM05D004020 ORTHO05D004735 0.0e+00 1299.6 1089 63.8
Migut.D02305 Erythranthe guttata HOM05D004020 ORTHO05D004735 0.0e+00 1298.5 1130 63.3
BcaC02g08224 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1296.2 1091 63.5
C04p57020 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1285.4 1090 63.5
BcaB06g28175 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1269.2 1079 64.5
ECA238G2607 Erigeron canadensis HOM05D004020 ORTHO05D004735 0.0e+00 1267.7 1094 62.2
HanXRQChr14g0451831 Helianthus annuus HOM05D004020 ORTHO05D004735 0.0e+00 1266.1 1125 61.6
CDE08G1223 Ceratophyllum demersum HOM05D004020 ORTHO05D004735 0.0e+00 1238.4 1084 61.3
Lsat_1_v5_gn_6_42101 Lactuca sativa HOM05D004020 ORTHO05D004735 0.0e+00 1234.2 1139 59.7
HanXRQChr02g0055251 Helianthus annuus HOM05D004020 ORTHO05D004735 0.0e+00 1221.8 1088 60.4
Eucgr.B03912 Eucalyptus grandis HOM05D004020 ORTHO05D004735 0.0e+00 1220.7 1017 66.5
Oeu007301.5 Olea europaea HOM05D004020 ORTHO05D004735 0.0e+00 1201.0 1288 54.6
ATR1158G033 Amborella trichopoda HOM05D004020 ORTHO05D004735 0.0e+00 1190.3 1090 59.8
ClCG01G012850 Citrullus lanatus HOM05D004020 ORTHO05D004735 0.0e+00 1177.5 968 66.8
CANSAT64G0934 Cannabis sativa HOM05D004020 ORTHO05D004735 0.0e+00 1163.7 1024 64.3
Lsat_1_v5_gn_2_99000 Lactuca sativa HOM05D004020 ORTHO05D004735 0.0e+00 1140.6 1143 56.9
Os10g0546300 Oryza sativa ssp. japonica HOM05D004020 ORTHO05D004735 0.0e+00 1139.0 1090 57.5
AUR62024038 Chenopodium quinoa HOM05D004020 ORTHO05D004735 0.0e+00 1129.4 1132 57.9
SGA_v2.0_scaffold27G11582 Striga asiatica HOM05D004020 ORTHO05D004735 0.0e+00 1126.7 1354 50.9
Zm00001eb022740 Zea mays HOM05D004020 ORTHO05D004735 0.0e+00 1125.5 1096 56.7
CARHR120590 Cardamine hirsuta HOM05D004020 ORTHO05D004735 0.0e+00 1118.6 945 64.0
MBI18_g10967_MAGBIO Magnolia biondii HOM05D004020 ORTHO05D004735 0.0e+00 1102.4 1102 57.5
Hund07762 Selenicereus undatus HOM05D004020 ORTHO05D004735 0.0e+00 1092.0 1078 56.9
Hund00854 Selenicereus undatus HOM05D004020 ORTHO05D004735 1.5e-294 1016.5 1023 58.8
DCAR_031639 Daucus carota HOM05D004020 ORTHO05D004735 7.2e-292 1007.7 926 60.8
AUR62041305 Chenopodium quinoa HOM05D004020 ORTHO05D004735 1.4e-287 993.4 1042 56.0
Peaxi162Scf00150g00916 Petunia axillaris HOM05D004020 ORTHO05D004735 2.5e-276 956.1 882 62.9
BraA03t11860Z Brassica rapa HOM05D004020 ORTHO05D004735 1.2e-246 857.4 802 62.1
SMO118G0476 Selaginella moellendorffii HOM05D004020 ORTHO05D004735 4.6e-230 802.4 1114 42.7
AL4G12830 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 7.8e-230 801.6 897 54.8
Pp3c5_16860 Physcomitrium patens HOM05D004020 ORTHO05D004735 1.9e-228 797.0 1125 43.3
Mapoly0001s0255 Marchantia polymorpha HOM05D004020 ORTHO05D004735 3.3e-228 796.2 1105 42.5
Ah.01g015940 Amaranthus hybridus HOM05D004020 ORTHO05D004735 1.2e-227 794.3 706 60.6
Pp3c16_8720 Physcomitrium patens HOM05D004020 ORTHO05D004735 8.9e-226 788.1 1131 42.3
AagrBONN_evm.TU.Sc2ySwM_340.402 Anthoceros agrestis HOM05D004020 ORTHO05D004735 3.4e-225 786.2 1129 40.9
Oeu008367.3 Olea europaea HOM05D004020 ORTHO05D004735 1.9e-220 770.4 939 52.3
Dinv12567 Davidia involucrata HOM05D004020 ORTHO05D004735 1.4e-215 754.2 985 49.6
Lj2C1000T5 Lonicera japonica HOM05D004020 ORTHO05D004735 3.2e-215 753.1 801 55.6
Haze_23514 Corylus avellana HOM05D004020 ORTHO05D004735 3.0e-205 719.9 646 62.4
AagrBONN_evm.TU.Sc2ySwM_117.107 Anthoceros agrestis HOM05D004020 ORTHO05D004735 1.7e-200 704.1 1058 40.3
Lj2A1002G14 Lonicera japonica HOM05D004020 ORTHO05D004735 3.7e-195 686.4 702 55.4
Gohir.A07G106066 Gossypium hirsutum HOM05D004020 ORTHO05D004735 9.3e-191 671.8 522 65.3
SalBow6G5048 Salvia bowleyana HOM05D004020 ORTHO05D004735 1.9e-175 620.9 527 62.8
Gorai.001G118200 Gossypium raimondii HOM05D004020 ORTHO05D004735 6.1e-174 615.9 424 76.4
Gohir.A07G106132 Gossypium hirsutum HOM05D004020 ORTHO05D004735 5.1e-173 612.8 452 72.6
unitig_746.g26602 Utricularia gibba HOM05D004020 ORTHO05D004735 1.5e-156 558.1 523 57.7
Cpa.g.sc47.20 Carica papaya HOM05D004020 ORTHO05D004735 8.0e-142 509.2 473 59.2
Lj2A1002G13 Lonicera japonica HOM05D004020 ORTHO05D004735 4.2e-135 486.9 401 66.1
HPP92_022569 Vanilla planifolia HOM05D004020 ORTHO05D004735 1.5e-116 425.2 329 67.2
SEGI_08231 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 9.9e-108 396.0 673 41.2
unitig_746.g26604 Utricularia gibba HOM05D004020 ORTHO05D004735 8.3e-107 392.9 372 59.7
CBR_g49688 Chara braunii HOM05D004020 ORTHO05D004735 1.2e-105 389.0 826 33.1
Peaxi162Scf00150g00917 Petunia axillaris HOM05D004020 ORTHO05D004735 2.5e-103 381.3 228 79.8
QL01p014670 Quercus lobata HOM05D004020 ORTHO05D004735 1.6e-89 335.5 351 51.6
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 1.2e-84 319.3 369 52.6
CANSAT64G1975 Cannabis sativa HOM05D004020 ORTHO05D004735 2.9e-83 314.7 186 76.9
MCO09G744 Micromonas commoda HOM05D004020 ORTHO05D004735 5.6e-79 300.4 1091 26.1
Cpa.g.sc47.22 Carica papaya HOM05D004020 ORTHO05D004735 7.4e-79 300.1 230 71.3
arahy.Tifrunner.gnm1.ann1.FLM5Q5 Arachis hypogaea HOM05D004020 ORTHO05D004735 2.5e-71 275.0 195 70.3
SHI06178 Sapria himalayana HOM05D004020 ORTHO05D004735 5.3e-69 267.3 545 35.8
PRCOL_00006567 Prasinoderma coloniale HOM05D004020 ORTHO05D004735 3.8e-67 261.2 1282 22.5
Haze_23513 Corylus avellana HOM05D004020 ORTHO05D004735 6.5e-67 260.4 193 71.0
Hma1.2p1_1225F.1_g268540 Hydrangea macrophylla HOM05D004020 ORTHO05D004735 5.1e-64 250.8 141 83.0
Haze_23515 Corylus avellana HOM05D004020 ORTHO05D004735 2.8e-62 245.0 141 83.7
HPP92_022573 Vanilla planifolia HOM05D004020 ORTHO05D004735 6.3e-62 243.8 142 80.3
C06p19250 Brassica napus HOM05D004020 ORTHO05D004735 1.6e-57 229.2 239 52.3
C06p24240 Brassica napus HOM05D004020 ORTHO05D004735 5.7e-55 220.7 252 49.2
FAN11G0203 Fragaria x ananassa HOM05D004020 ORTHO05D004735 3.7e-54 218.0 169 71.6
FAN21G0688 Fragaria x ananassa HOM05D004020 ORTHO05D004735 3.7e-54 218.0 169 71.6
DCAR_031637 Daucus carota HOM05D004020 ORTHO05D004735 3.2e-50 204.9 118 82.2
Pp3c25_5430 Physcomitrium patens HOM05D004020 ORTHO05D004735 4.2e-50 204.5 549 31.3
Lj2C1000T6 Lonicera japonica HOM05D004020 ORTHO05D004735 4.7e-49 201.1 115 82.6
Haze_23512 Corylus avellana HOM05D004020 ORTHO05D004735 3.3e-47 194.9 145 75.9
AL580U10010 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 1.3e-46 193.0 140 73.6
TAR633G2769 Trochodendron aralioides HOM05D004020 ORTHO05D004735 4.8e-46 191.0 115 78.3
SHI06179 Sapria himalayana HOM05D004020 ORTHO05D004735 5.5e-42 177.6 145 63.4
Cre10.g443350 Chlamydomonas reinhardtii HOM05D004020 ORTHO05D004735 1.4e-40 172.9 1167 21.1
TAR476G0003 Trochodendron aralioides HOM05D004020 ORTHO05D004735 5.7e-39 167.5 136 73.5
MD01G1172900 Malus domestica HOM05D004020 ORTHO05D004735 9.7e-39 166.8 133 72.2
Rhsim04G0145900 Rhododendron simsii HOM05D000045 ORTHO05D003665 5.0e-35 154.5 126 65.1
ClCG01G012880 Citrullus lanatus HOM05D004020 ORTHO05D004735 1.1e-34 153.3 83 90.4
Cpa.g.sc47.18 Carica papaya HOM05D004020 ORTHO05D004735 9.4e-34 150.2 82 84.1
Nitab4.5_0027393g0010 Nicotiana tabacum HOM05D004020 ORTHO05D004735 3.6e-33 148.3 194 51.5
SEGI_13700 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 6.1e-33 147.5 112 71.4
CANSAT64G1073 Cannabis sativa HOM05D004020 ORTHO05D004735 3.7e-30 138.3 83 75.9
arahy.Tifrunner.gnm1.ann1.LCV131 Arachis hypogaea HOM05D004020 ORTHO05D004735 7.0e-29 134.0 110 62.7
unitig_746.g26603 Utricularia gibba HOM05D004020 ORTHO05D004735 2.7e-28 132.1 165 47.9
FAN16G3550 Fragaria x ananassa HOM05D004020 ORTHO05D004735 5.9e-28 131.0 88 83.0
BcaC01g02437 Brassica carinata HOM05D004020 ORTHO05D004735 6.1e-25 120.9 148 43.9
Nitab4.5_0005230g0050 Nicotiana tabacum HOM05D004020 ORTHO05D004735 1.4e-24 119.8 167 46.7
C03p65310 Brassica napus HOM05D004020 ORTHO05D004735 1.8e-24 119.4 134 47.0
Zm00001eb064060 Zea mays HOM05D002996 ORTHO05D003536 1.5e-23 116.3 115 54.8
Zm00001eb302500 Zea mays HOM05D004020 ORTHO05D004735 3.1e-21 108.6 100 64.0
SHI06176 Sapria himalayana HOM05D004020 ORTHO05D004735 1.0e-19 103.6 85 56.5
HPP92_022568 Vanilla planifolia HOM05D004020 ORTHO05D004735 5.5e-18 97.8 102 52.9
SHI06174 Sapria himalayana HOM05D004020 ORTHO05D004735 1.6e-17 96.3 95 53.7
Zm00001eb218380 Zea mays HOM05D002996 ORTHO05D003536 2.6e-15 89.0 87 50.6
Lsat_1_v5_gn_8_150800 Lactuca sativa HOM05D003321 ORTHO05D033839 2.3e-11 75.9 48 81.2
SHI06173 Sapria himalayana HOM05D004020 ORTHO05D003975 2.1e-09 69.3 59 67.8
Nitab4.5_0011593g0020 Nicotiana tabacum HOM05D004020 ORTHO05D004735 8.0e-09 67.4 43 69.8
SHI06177 Sapria himalayana HOM05D004020 ORTHO05D004735 1.7e-06 59.7 45 60.0


User provided reference genes

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