Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_19237_v3 Cicer arietinum L. HOM05D004427 ORTHO05D005381 4.7e-137 491.1 236 100.0
TPR.G2989 Trifolium pratense HOM05D004427 ORTHO05D005381 3.9e-115 418.3 229 86.0
Psat7g222000 Pisum sativum HOM05D004427 ORTHO05D005381 1.3e-113 413.3 236 82.6
Medtr4g061080 Medicago truncatula HOM05D004427 ORTHO05D005381 3.4e-111 405.2 237 82.3
Lj3g0007721 Lotus japonicus HOM05D004427 ORTHO05D005381 5.8e-111 404.4 236 80.9
Glyma.12G072600 Glycine max HOM05D004427 ORTHO05D005381 7.3e-106 387.5 228 79.8
Phvul.011G071700 Phaseolus vulgaris HOM05D004427 ORTHO05D005381 3.0e-99 365.5 228 75.9
Lalb_Chr19g0137481 Lupinus albus HOM05D004427 ORTHO05D005381 1.5e-98 363.2 236 72.5
VMungo1127G1062 Vigna mungo HOM05D004427 ORTHO05D005381 1.5e-98 363.2 228 76.8
Cfa011378 Carpinus fangiana HOM05D004427 ORTHO05D005381 2.1e-92 342.8 226 70.4
Haze_23944 Corylus avellana HOM05D004427 ORTHO05D005381 1.1e-90 337.0 226 69.5
COL.COLO4_25263 Corchorus olitorius HOM05D004427 ORTHO05D005381 3.3e-90 335.5 227 68.7
arahy.Tifrunner.gnm1.ann1.T6X9B2 Arachis hypogaea HOM05D004427 ORTHO05D005381 5.7e-90 334.7 226 70.4
QL01p036593 Quercus lobata HOM05D004427 ORTHO05D005381 5.7e-90 334.7 234 66.7
CiPaw.14G077000 Carya illinoinensis HOM05D004427 ORTHO05D005381 1.3e-89 333.6 229 67.7
arahy.Tifrunner.gnm1.ann1.JL7YN4 Arachis hypogaea HOM05D004427 ORTHO05D005381 2.1e-89 332.8 226 69.5
Gohir.A05G075200 Gossypium hirsutum HOM05D004427 ORTHO05D005381 6.2e-89 331.3 227 68.3
Gohir.D05G078000 Gossypium hirsutum HOM05D004427 ORTHO05D005381 6.2e-89 331.3 227 68.3
Gorai.009G079500 Gossypium raimondii HOM05D004427 ORTHO05D005381 1.4e-88 330.1 227 67.8
Duzib150G0661 Durio zibethinus HOM05D004427 ORTHO05D005381 2.0e-87 326.2 227 67.4
Manes.04G026600 Manihot esculenta HOM05D004427 ORTHO05D005381 2.6e-87 325.9 225 68.4
ClCG02G020830 Citrullus lanatus HOM05D004427 ORTHO05D005381 5.8e-87 324.7 237 66.7
Duzib168G1361 Durio zibethinus HOM05D004427 ORTHO05D005381 1.0e-86 323.9 227 67.0
Thecc.09G261900 Theobroma cacao HOM05D004427 ORTHO05D005381 1.0e-86 323.9 227 67.8
vmacro14479 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 9.3e-85 317.4 226 65.5
Ciclev10029217m.g Citrus clementina HOM05D004427 ORTHO05D005381 3.5e-84 315.5 227 64.8
TAR623G1453 Trochodendron aralioides HOM05D004427 ORTHO05D005381 1.0e-83 313.9 227 65.2
Aqoxy4G03193 Aquilegia oxysepala HOM05D004427 ORTHO05D005381 6.7e-83 311.2 227 62.6
PGR119G1466 Punica granatum HOM05D004427 ORTHO05D005381 1.9e-82 309.7 225 65.8
Dinv10838 Davidia involucrata HOM05D004427 ORTHO05D005381 3.3e-82 308.9 225 65.3
RcHm_v2.0_Chr5g0061241 Rosa chinensis HOM05D004427 ORTHO05D005381 7.4e-82 307.8 228 67.1
FvH4_3g33710 Fragaria vesca HOM05D004427 ORTHO05D005381 9.7e-82 307.4 228 64.9
FAN25G0902 Fragaria x ananassa HOM05D004427 ORTHO05D005381 9.7e-82 307.4 233 63.5
TWI75G0497 Tripterygium wilfordii HOM05D004427 ORTHO05D005381 1.3e-81 307.0 226 63.7
MSTRG.21151 Avicennia marina HOM05D004427 ORTHO05D005381 2.2e-81 306.2 220 64.5
Nn2g10653 Nelumbo nucifera HOM05D004427 ORTHO05D005381 2.8e-81 305.8 227 62.1
FAN16G3079 Fragaria x ananassa HOM05D004427 ORTHO05D005381 3.7e-81 305.4 228 64.9
CSS0010329 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 4.8e-81 305.1 227 61.7
FAN21G1733 Fragaria x ananassa HOM05D004427 ORTHO05D005381 4.8e-81 305.1 228 64.9
FAN11G1819 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.1e-80 303.9 228 64.9
Sed0015128 Sechium edule HOM05D004427 ORTHO05D005381 1.8e-80 303.1 237 62.9
Oeu062268.1 Olea europaea HOM05D004427 ORTHO05D005381 2.4e-80 302.8 227 64.8
Rhsim01G0221200 Rhododendron simsii HOM05D004427 ORTHO05D005381 3.1e-80 302.4 226 62.8
Hma1.2p1_2156F.1_g315430 Hydrangea macrophylla HOM05D004427 ORTHO05D005381 5.3e-80 301.6 226 63.7
Eucgr.J00959 Eucalyptus grandis HOM05D004427 ORTHO05D005381 6.9e-80 301.2 225 60.4
MELO3C025732.2 Cucumis melo HOM05D004427 ORTHO05D005381 3.4e-79 298.9 237 61.2
GSVIVG01025117001 Vitis vinifera HOM05D004427 ORTHO05D005381 5.9e-79 298.1 224 63.4
Prupe.6G092400 Prunus persica HOM05D004427 ORTHO05D005381 7.7e-79 297.7 225 64.9
CsaV3_6G021480 Cucumis sativus L. HOM05D004427 ORTHO05D005381 1.3e-78 297.0 237 60.8
Sopen05g001320 Solanum pennellii HOM05D004427 ORTHO05D005381 2.2e-78 296.2 227 66.1
CANSAT54G0683 Cannabis sativa HOM05D004427 ORTHO05D005381 6.5e-78 294.7 229 63.3
Lj1C183T1 Lonicera japonica HOM05D004427 ORTHO05D005381 8.5e-78 294.3 226 61.9
PGSC0003DMG400013475 Solanum tuberosum HOM05D004427 ORTHO05D005381 8.5e-78 294.3 227 65.6
Lj1C183T3 Lonicera japonica HOM05D004427 ORTHO05D005381 1.9e-77 293.1 226 60.6
MD11G1123000 Malus domestica HOM05D004427 ORTHO05D005381 4.2e-77 292.0 225 63.1
HanXRQChr02g0051371 Helianthus annuus HOM05D004427 ORTHO05D005381 7.2e-77 291.2 227 61.2
CSS0013146 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 2.7e-76 289.3 227 58.1
AUR62025117 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.4e-75 287.0 226 59.3
ECA233G4215 Erigeron canadensis HOM05D004427 ORTHO05D005381 1.8e-75 286.6 224 61.6
PSO210G5092 Papaver somniferum HOM05D004427 ORTHO05D005381 1.8e-75 286.6 225 62.2
Migut.N02630 Erythranthe guttata HOM05D004427 ORTHO05D005381 2.3e-75 286.2 236 58.5
unitig_0.g1522 Utricularia gibba HOM05D004427 ORTHO05D005381 5.1e-75 285.0 227 57.7
EL10Ac9g22377 Beta vulgaris HOM05D004427 ORTHO05D005381 8.8e-75 284.3 227 61.7
AUR62037165 Chenopodium quinoa HOM05D004427 ORTHO05D005381 7.4e-74 281.2 226 58.0
MD09G1211300 Malus domestica HOM05D004427 ORTHO05D005381 1.7e-73 280.0 225 60.9
CAN.G354.26 Capsicum annuum HOM05D004427 ORTHO05D005381 2.2e-73 279.6 228 62.7
CAN.G765.37 Capsicum annuum HOM05D004427 ORTHO05D005381 3.7e-73 278.9 227 62.6
AL817U10010 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 4.1e-72 275.4 226 58.4
Cc01_g11690 Coffea canephora HOM05D004427 ORTHO05D005381 9.1e-72 274.2 229 57.6
AL8G36800 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 1.2e-71 273.9 226 57.5
AT5G60190 Arabidopsis thaliana HOM05D004427 ORTHO05D005381 1.2e-71 273.9 226 57.1
Aa31LG1G12350 Aethionema arabicum HOM05D004427 ORTHO05D005381 1.5e-71 273.5 226 58.0
Ah.02g113850 Amaranthus hybridus HOM05D004427 ORTHO05D005381 3.4e-71 272.3 225 59.6
BraA03t10444Z Brassica rapa HOM05D004427 ORTHO05D005381 7.7e-71 271.2 229 56.8
CARHR273870 Cardamine hirsuta HOM05D004427 ORTHO05D005381 7.7e-71 271.2 225 56.9
CSS0042497 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.0e-70 270.8 226 57.1
A03p11310 Brassica napus HOM05D004427 ORTHO05D005381 2.9e-70 269.2 229 56.3
BcaB01g04643 Brassica carinata HOM05D004427 ORTHO05D005381 3.8e-70 268.9 229 55.9
Sp6g21820 Schrenkiella parvula HOM05D004427 ORTHO05D005381 8.5e-70 267.7 226 54.4
BolC3t13765H Brassica oleracea HOM05D004427 ORTHO05D005381 9.4e-69 264.2 229 55.0
Nitab4.5_0000100g0070 Nicotiana tabacum HOM05D004427 ORTHO05D005381 1.2e-68 263.8 204 63.2
Nitab4.5_0000607g0030 Nicotiana tabacum HOM05D004427 ORTHO05D005381 1.2e-68 263.8 207 62.3
CSS0008575 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.6e-68 263.5 183 63.9
Peaxi162Scf00155g00071 Petunia axillaris HOM05D004427 ORTHO05D005381 3.6e-68 262.3 208 64.9
C03p13030 Brassica napus HOM05D004427 ORTHO05D005381 4.7e-68 261.9 229 54.6
THA.LOC104799482 Tarenaya hassleriana HOM05D004427 ORTHO05D005381 1.0e-67 260.8 227 55.5
Carub.0008s2094 Capsella rubella HOM05D004427 ORTHO05D005381 1.4e-67 260.4 226 55.8
Thhalv10014584m.g Eutrema salsugineum HOM05D004427 ORTHO05D005381 1.8e-67 260.0 234 55.1
BcaB08g36313 Brassica carinata HOM05D004427 ORTHO05D005381 1.5e-66 256.9 223 55.2
Lsat_1_v5_gn_6_24041 Lactuca sativa HOM05D004427 ORTHO05D005381 2.0e-66 256.5 219 56.2
BraA10t43818Z Brassica rapa HOM05D004427 ORTHO05D005381 4.8e-65 251.9 232 53.4
A10p17340 Brassica napus HOM05D004427 ORTHO05D005381 2.4e-64 249.6 226 54.4
CSS0048170 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.0e-62 244.2 217 53.5
SHI06027 Sapria himalayana HOM05D004427 ORTHO05D005381 6.1e-60 235.0 222 55.4
SGA_v2.0_scaffold80G25743 Striga asiatica HOM05D004427 ORTHO05D005381 6.1e-60 235.0 228 52.2
PSO210G2821 Papaver somniferum HOM05D004427 ORTHO05D005381 1.0e-59 234.2 225 52.9
QL03p001209 Quercus lobata HOM05D004427 ORTHO05D005381 5.7e-58 228.4 247 47.4
Sabra13G0002300 Salix brachista HOM05D004427 ORTHO05D005381 8.5e-54 214.5 236 48.3
ATR0069G023 Amborella trichopoda HOM05D004427 ORTHO05D005381 1.1e-53 214.2 225 48.4
Potri.013G002700 Populus trichocarpa HOM05D004427 ORTHO05D005381 1.6e-52 210.3 239 49.0
SEGI_39191 Sequoiadendron giganteum HOM05D004427 ORTHO05D005381 1.0e-51 207.6 218 50.9
Sc06g0007950 Simmondsia chinensis HOM05D004427 ORTHO05D005381 6.8e-51 204.9 141 67.4
BcaC04g19664 Brassica carinata HOM05D004427 ORTHO05D005381 8.8e-51 204.5 229 47.2
TAR371G1244 Trochodendron aralioides HOM05D004427 ORTHO05D005381 2.6e-50 203.0 250 45.6
TAR376G0174 Trochodendron aralioides HOM05D004427 ORTHO05D005381 2.4e-48 196.4 250 46.4
QL01p000714 Quercus lobata HOM05D004427 ORTHO05D005381 9.1e-48 194.5 237 43.0
vmacro14781 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 4.5e-47 192.2 227 44.5
TAR629G2862 Trochodendron aralioides HOM05D004427 ORTHO05D005381 1.3e-46 190.7 245 42.4
Ah.02g123640 Amaranthus hybridus HOM05D004427 ORTHO05D005381 5.5e-45 185.3 226 42.9
Os12g0102350 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 5.5e-45 185.3 234 41.5
Mapoly0009s0037 Marchantia polymorpha HOM05D004427 ORTHO05D005381 7.2e-45 184.9 237 38.8
TAR371G1167 Trochodendron aralioides HOM05D004427 ORTHO05D005381 2.1e-44 183.3 233 44.6
Os11g0102700 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 8.0e-44 181.4 235 41.7
Zm00001eb413910 Zea mays HOM05D004427 ORTHO05D005381 2.3e-43 179.9 226 42.5
AagrBONN_evm.TU.Sc2ySwM_344.2535 Anthoceros agrestis HOM05D004427 ORTHO05D005381 6.8e-43 178.3 242 41.3
Hund22380 Selenicereus undatus HOM05D004427 ORTHO05D005381 8.8e-43 177.9 237 39.7
C09p52680 Brassica napus HOM05D004427 ORTHO05D005381 5.7e-42 175.3 175 48.6
BolC9t58136H Brassica oleracea HOM05D004427 ORTHO05D005381 5.7e-42 175.3 175 48.6
AUR62003115 Chenopodium quinoa HOM05D004427 ORTHO05D005381 7.5e-42 174.9 227 45.4
Ah.03g139880 Amaranthus hybridus HOM05D004427 ORTHO05D005381 1.3e-41 174.1 261 37.5
EL10Ac8g19614 Beta vulgaris HOM05D004427 ORTHO05D005381 1.3e-41 174.1 261 38.7
Solyc05g005310.3 Solanum lycopersicum HOM05D004427 ORTHO05D005381 8.3e-41 171.4 151 57.0
Ah.02g123630 Amaranthus hybridus HOM05D004427 ORTHO05D005381 3.1e-40 169.5 261 37.2
CSS0032605 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 4.1e-40 169.1 226 42.5
EL10Ac5g12984 Beta vulgaris HOM05D004427 ORTHO05D005381 5.4e-40 168.7 240 41.2
DCAR_002673 Daucus carota HOM05D004427 ORTHO05D005381 9.1e-40 167.9 259 36.7
EL10Ac9g22643 Beta vulgaris HOM05D004427 ORTHO05D005381 8.6e-38 161.4 260 37.3
Pp3c21_14830 Physcomitrium patens HOM05D004427 ORTHO05D005381 1.5e-37 160.6 240 35.4
Lj3A845T93 Lonicera japonica HOM05D004427 ORTHO05D005381 9.5e-37 157.9 215 40.9
AUR62032911 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.8e-35 153.7 252 36.9
CSS0019084 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 4.4e-34 149.1 228 41.2
RcHm_v2.0_Chr4g0447061 Rosa chinensis HOM05D004427 ORTHO05D005381 5.7e-34 148.7 146 50.0
CSS0026652 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 9.8e-34 147.9 228 40.8
SMO367G1171 Selaginella moellendorffii HOM05D002435 ORTHO05D002550 1.3e-33 147.5 189 43.4
Prupe.1G350400 Prunus persica HOM05D004427 ORTHO05D005381 1.7e-33 147.1 358 27.7
CDE04G2448 Ceratophyllum demersum HOM05D004427 ORTHO05D005381 2.9e-33 146.4 159 43.4
FAN02G3329 Fragaria x ananassa HOM05D004427 ORTHO05D005381 6.4e-33 145.2 320 31.2
FvH4_6g48790 Fragaria vesca HOM05D004427 ORTHO05D005381 8.3e-33 144.8 311 31.2
Cre01.g055050 Chlamydomonas reinhardtii HOM05D004427 ORTHO05D005381 2.4e-32 143.3 209 37.3
FAN05G2706 Fragaria x ananassa HOM05D004427 ORTHO05D005381 2.4e-32 143.3 317 31.2
FvH4_4g37251 Fragaria vesca HOM05D004427 ORTHO05D005381 5.4e-32 142.1 140 47.9
Manes.11G140201 Manihot esculenta HOM05D004427 ORTHO05D005381 2.0e-31 140.2 125 55.2
DCAR_026152 Daucus carota HOM05D004427 ORTHO05D005381 7.8e-31 138.3 224 39.3
MD00G1127100 Malus domestica HOM05D004427 ORTHO05D005381 2.3e-30 136.7 159 42.8
CBR_g4323 Chara braunii HOM05D004427 ORTHO05D005381 1.5e-29 134.0 186 37.1
DCAR_012615 Daucus carota HOM05D004427 ORTHO05D005381 4.3e-29 132.5 246 37.0
MCO07G761 Micromonas commoda HOM05D004427 ORTHO05D005381 4.7e-28 129.0 227 34.4
Os12g0127600 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 8.0e-28 128.3 210 32.9
CAN.G682.5 Capsicum annuum HOM05D004427 ORTHO05D005381 6.8e-27 125.2 114 53.5
Actinidia09505 Actinidia chinensis HOM05D004427 ORTHO05D005381 2.0e-26 123.6 142 45.8
RcHm_v2.0_Chr4g0387651 Rosa chinensis HOM05D028185 ORTHO05D025555 1.7e-25 120.6 151 43.7
FAN12G0369 Fragaria x ananassa HOM05D028185 ORTHO05D025555 2.2e-25 120.2 151 41.7
FAN17G0248 Fragaria x ananassa HOM05D004427 ORTHO05D025555 3.7e-25 119.4 150 40.7
Lj1C183G2 Lonicera japonica HOM05D004427 ORTHO05D005381 2.4e-24 116.7 104 50.0
Os12g0103580 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 2.7e-23 113.2 238 30.3
FAN17G0618 Fragaria x ananassa HOM05D000639 ORTHO05D006731 2.3e-19 100.1 107 42.1
FAN09G1397 Fragaria x ananassa HOM05D004427 ORTHO05D005381 4.0e-19 99.4 225 32.9
FAN07G0825 Fragaria x ananassa HOM05D000639 ORTHO05D006731 2.9e-17 93.2 150 32.7
AUR62037167 Chenopodium quinoa HOM05D004427 ORTHO05D005381 4.9e-17 92.4 76 50.0
PRCOL_00006943 Prasinoderma coloniale HOM05D004007 ORTHO05D005127 9.2e-16 88.2 244 30.3
AUR62015500 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.2e-15 87.8 160 36.9
AUR62002202 Chenopodium quinoa HOM05D004427 ORTHO05D005381 3.1e-11 73.2 160 31.9
AUR62008635 Chenopodium quinoa HOM05D004427 ORTHO05D005381 4.0e-11 72.8 94 41.5
Rhsim01G0258900 Rhododendron simsii HOM05D004427 ORTHO05D005381 5.8e-10 68.9 72 48.6
Cfa026731 Carpinus fangiana HOM05D004427 ORTHO05D005381 2.4e-08 63.5 115 33.0


User provided reference genes

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