Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_19034_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 1.1e-217 759.6 373 100.0
Medtr4g079390 Medicago truncatula HOM05D003469 ORTHO05D004084 1.6e-171 606.3 332 88.3
Glyma.11G102000 Glycine max HOM05D003469 ORTHO05D004084 2.5e-169 599.0 335 87.5
Glyma.12G027700 Glycine max HOM05D003469 ORTHO05D004084 1.1e-167 593.6 335 87.5
Phvul.011G031000 Phaseolus vulgaris HOM05D003469 ORTHO05D004084 1.5e-166 589.7 335 85.7
VMungo1127G1455 Vigna mungo HOM05D003469 ORTHO05D004084 2.6e-166 589.0 335 86.3
Medtr4g074860 Medicago truncatula HOM05D003469 ORTHO05D004084 1.7e-165 586.3 345 83.8
TPR.G38733 Trifolium pratense HOM05D003469 ORTHO05D004084 1.7e-165 586.3 333 86.8
arahy.Tifrunner.gnm1.ann1.M9HC5A Arachis hypogaea HOM05D003469 ORTHO05D004084 2.1e-163 579.3 334 84.7
Lj1g0005967 Lotus japonicus HOM05D003469 ORTHO05D004084 4.6e-163 578.2 335 84.5
arahy.Tifrunner.gnm1.ann1.046I3L Arachis hypogaea HOM05D003469 ORTHO05D004084 6.1e-163 577.8 334 84.4
Lalb_Chr07g0195581 Lupinus albus HOM05D003469 ORTHO05D004084 1.1e-153 547.0 361 75.1
Haze_14033 Corylus avellana HOM05D003469 ORTHO05D004084 2.1e-147 526.2 333 77.5
CiPaw.03G010300 Carya illinoinensis HOM05D003469 ORTHO05D004084 7.9e-147 524.2 336 76.5
QL09p054764 Quercus lobata HOM05D003469 ORTHO05D004084 3.7e-144 515.4 337 76.3
Thecc.08G168800 Theobroma cacao HOM05D003469 ORTHO05D004084 7.2e-140 501.1 334 72.8
TWI38G1177 Tripterygium wilfordii HOM05D003469 ORTHO05D004084 8.8e-138 494.2 336 72.3
TAR628G0771 Trochodendron aralioides HOM05D003469 ORTHO05D004084 7.7e-134 481.1 334 70.4
CANSAT78G0348 Cannabis sativa HOM05D003469 ORTHO05D004084 2.9e-133 479.2 337 71.2
Nn5g27173 Nelumbo nucifera HOM05D003469 ORTHO05D004084 6.5e-133 478.0 334 69.5
GSVIVG01036699001 Vitis vinifera HOM05D003469 ORTHO05D004084 6.1e-131 471.5 335 69.0
Rhsim12G0000800 Rhododendron simsii HOM05D003469 ORTHO05D004084 3.0e-130 469.2 334 68.0
vmacro00914 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 4.0e-130 468.8 334 67.7
Actinidia21939 Actinidia chinensis HOM05D003469 ORTHO05D004084 5.2e-130 468.4 338 66.3
Duzib235G0325 Durio zibethinus HOM05D003469 ORTHO05D004084 5.7e-129 464.9 335 68.7
Gorai.008G247300 Gossypium raimondii HOM05D003469 ORTHO05D004084 9.8e-129 464.2 337 68.0
TPR.G32330 Trifolium pratense HOM05D003469 ORTHO05D004084 2.2e-128 463.0 293 79.5
Eucgr.G01221 Eucalyptus grandis HOM05D003469 ORTHO05D004084 3.7e-128 462.2 339 66.7
Atru.chr9.1130 Acer truncatum HOM05D003469 ORTHO05D004084 6.3e-128 461.5 336 66.1
TAR633G1289 Trochodendron aralioides HOM05D003469 ORTHO05D004084 1.8e-127 459.9 334 67.1
MD09G1155000 Malus domestica HOM05D003469 ORTHO05D004084 5.4e-127 458.4 336 67.9
Lj9C162G1 Lonicera japonica HOM05D003469 ORTHO05D004084 9.1e-127 457.6 337 67.7
Solyc06g063420.4 Solanum lycopersicum HOM05D003469 ORTHO05D004084 1.6e-126 456.8 334 66.2
Sopen06g022880 Solanum pennellii HOM05D003469 ORTHO05D004084 1.6e-126 456.8 334 66.2
PSO170G4646 Papaver somniferum HOM05D003469 ORTHO05D004084 2.0e-126 456.4 336 67.9
Prupe.8G070000 Prunus persica HOM05D003469 ORTHO05D004084 2.7e-126 456.1 336 68.2
Manes.06G016500 Manihot esculenta HOM05D003469 ORTHO05D004084 3.5e-126 455.7 340 67.9
CAN.G14.42 Capsicum annuum HOM05D003469 ORTHO05D004084 7.7e-126 454.5 354 64.1
Gohir.A12G230000 Gossypium hirsutum HOM05D003469 ORTHO05D004084 7.7e-126 454.5 337 67.1
Peaxi162Scf00818g00323 Petunia axillaris HOM05D003469 ORTHO05D004084 2.5e-124 449.5 339 65.5
Ciclev10019721m.g Citrus clementina HOM05D003469 ORTHO05D004084 5.5e-124 448.4 339 65.8
RcHm_v2.0_Chr2g0151071 Rosa chinensis HOM05D003469 ORTHO05D004084 5.5e-124 448.4 336 66.7
CDE05G0531 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 9.5e-124 447.6 331 65.9
DCAR_001477 Daucus carota HOM05D003469 ORTHO05D004084 2.1e-123 446.4 325 67.7
CSS0010807 Camellia sinensis var. sinensis HOM05D003469 ORTHO05D004084 4.7e-123 445.3 336 65.8
MBI03_g18641_MAGBIO Magnolia biondii HOM05D003469 ORTHO05D004084 4.7e-123 445.3 333 66.4
Potri.013G128900 Populus trichocarpa HOM05D003469 ORTHO05D004084 8.0e-123 444.5 335 66.9
EL10Ac5g10861 Beta vulgaris HOM05D003469 ORTHO05D004084 1.4e-122 443.7 336 64.9
ClCG07G013810 Citrullus lanatus HOM05D003469 ORTHO05D004084 1.8e-122 443.4 335 65.4
Gohir.D12G231100 Gossypium hirsutum HOM05D003469 ORTHO05D004084 5.2e-122 441.8 337 65.6
FvH4_6g37900 Fragaria vesca HOM05D003469 ORTHO05D004084 6.8e-122 441.4 336 65.5
FAN02G0848 Fragaria x ananassa HOM05D003469 ORTHO05D004084 6.8e-122 441.4 336 65.5
FAN14G5376 Fragaria x ananassa HOM05D003469 ORTHO05D004084 6.8e-122 441.4 336 65.5
PGSC0003DMG400033134 Solanum tuberosum HOM05D003469 ORTHO05D004084 6.8e-122 441.4 319 65.8
CsaV3_3G043790 Cucumis sativus L. HOM05D003469 ORTHO05D004084 7.5e-121 438.0 335 64.5
Dinv28114 Davidia involucrata HOM05D003469 ORTHO05D004084 2.2e-120 436.4 336 63.7
MELO3C013095.2 Cucumis melo HOM05D003469 ORTHO05D004084 1.4e-119 433.7 335 63.9
FAN09G4617 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.4e-119 433.0 336 64.3
AUR62031062 Chenopodium quinoa HOM05D003469 ORTHO05D004084 4.1e-119 432.2 336 63.4
AUR62008300 Chenopodium quinoa HOM05D003469 ORTHO05D004084 5.4e-119 431.8 336 63.4
RcHm_v2.0_Chr2g0151101 Rosa chinensis HOM05D003469 ORTHO05D004084 7.0e-119 431.4 326 66.6
MSTRG.1003 Avicennia marina HOM05D003469 ORTHO05D004084 3.5e-118 429.1 332 64.5
AUR62039415 Chenopodium quinoa HOM05D003469 ORTHO05D004084 1.3e-117 427.2 336 63.1
Hund09398 Selenicereus undatus HOM05D003469 ORTHO05D004084 8.6e-117 424.5 345 61.7
Cc00_g11470 Coffea canephora HOM05D003469 ORTHO05D004084 1.1e-116 424.1 332 63.3
Lj9C173G0 Lonicera japonica HOM05D003469 ORTHO05D004084 5.6e-116 421.8 330 64.8
MD17G1141100 Malus domestica HOM05D003469 ORTHO05D004084 7.3e-116 421.4 312 66.7
Nitab4.5_0002354g0130 Nicotiana tabacum HOM05D003469 ORTHO05D004084 7.3e-116 421.4 334 62.3
Nitab4.5_0003757g0100 Nicotiana tabacum HOM05D003469 ORTHO05D004084 1.2e-115 420.6 334 62.3
Sed0013857 Sechium edule HOM05D003469 ORTHO05D004084 1.6e-115 420.2 335 63.3
ECA232G2309 Erigeron canadensis HOM05D003469 ORTHO05D004084 3.0e-114 416.0 332 63.6
Sc09g0010840 Simmondsia chinensis HOM05D003469 ORTHO05D004084 4.0e-114 415.6 336 62.2
Aqoxy6G00028 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 1.5e-113 413.7 334 61.1
Migut.C00329 Erythranthe guttata HOM05D003469 ORTHO05D004084 7.5e-113 411.4 330 62.4
Carub.0001s1741 Capsella rubella HOM05D003469 ORTHO05D004084 1.8e-111 406.8 282 67.0
BcaB07g34024 Brassica carinata HOM05D003469 ORTHO05D004084 2.4e-111 406.4 282 66.7
AT1G17680 Arabidopsis thaliana HOM05D003469 ORTHO05D004084 9.2e-111 404.4 282 67.4
BcaC05g25689 Brassica carinata HOM05D003469 ORTHO05D004084 1.2e-110 404.1 358 56.4
C05p16090 Brassica napus HOM05D003469 ORTHO05D004084 1.2e-110 404.1 358 56.4
HanXRQChr09g0266911 Helianthus annuus HOM05D003469 ORTHO05D004084 1.2e-110 404.1 333 59.5
A06p13570 Brassica napus HOM05D003469 ORTHO05D004084 1.6e-110 403.7 358 56.4
BolC5t30309H Brassica oleracea HOM05D003469 ORTHO05D004084 1.6e-110 403.7 358 56.1
BraA06t24509Z Brassica rapa HOM05D003469 ORTHO05D004084 1.6e-110 403.7 358 56.4
THA.LOC104807542 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 1.6e-110 403.7 282 67.0
Lsat_1_v5_gn_4_131841 Lactuca sativa HOM05D003469 ORTHO05D004084 2.7e-110 402.9 334 59.9
AL1G30030 Arabidopsis lyrata HOM05D003469 ORTHO05D004084 3.5e-110 402.5 282 66.7
BcaC02g11929 Brassica carinata HOM05D003469 ORTHO05D004084 4.6e-110 402.1 397 52.9
BolC4t22588H Brassica oleracea HOM05D003469 ORTHO05D004084 6.0e-110 401.7 394 53.8
C04p09790 Brassica napus HOM05D003469 ORTHO05D004084 7.8e-110 401.4 397 53.1
Sp1g15780 Schrenkiella parvula HOM05D003469 ORTHO05D004084 7.8e-110 401.4 358 56.4
Thhalv10006758m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 1.3e-109 400.6 358 55.9
SalBow7G2370 Salvia bowleyana HOM05D003469 ORTHO05D004084 1.7e-109 400.2 330 61.8
RcHm_v2.0_Chr6g0293861 Rosa chinensis HOM05D003469 ORTHO05D004084 3.9e-109 399.1 347 60.2
Peaxi162Scf00015g00107 Petunia axillaris HOM05D003469 ORTHO05D004084 5.6e-108 395.2 335 57.3
Os11g0266800 Oryza sativa ssp. japonica HOM05D003469 ORTHO05D004084 3.6e-107 392.5 355 56.3
THA.LOC104800339 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 1.5e-105 387.1 336 58.9
Aqoxy4G02849 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 3.4e-105 386.0 336 60.4
HPP92_015320 Vanilla planifolia HOM05D003469 ORTHO05D004084 1.3e-104 384.0 317 60.6
FAN15G0576 Fragaria x ananassa HOM05D003469 ORTHO05D004084 4.9e-104 382.1 346 57.2
FvH4_2g25610 Fragaria vesca HOM05D003469 ORTHO05D004084 1.1e-103 380.9 364 56.0
FAN24G3399 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.1e-103 380.9 364 56.0
Lj9A422T76 Lonicera japonica HOM05D003469 ORTHO05D004084 1.9e-103 380.2 334 59.6
Aa31LG7G2510 Aethionema arabicum HOM05D003469 ORTHO05D004084 2.7e-102 376.3 282 62.1
unitig_26.g9845 Utricularia gibba HOM05D003469 ORTHO05D004084 2.7e-102 376.3 361 54.8
Nitab4.5_0002906g0070 Nicotiana tabacum HOM05D003469 ORTHO05D004084 1.1e-100 370.9 329 55.9
Zm00001eb171180 Zea mays HOM05D003469 ORTHO05D004084 2.5e-100 369.8 333 55.3
Nitab4.5_0005224g0040 Nicotiana tabacum HOM05D003469 ORTHO05D004084 3.3e-100 369.4 335 54.6
SMO164G0159 Selaginella moellendorffii HOM05D003469 ORTHO05D004084 7.5e-97 358.2 339 53.7
Oeu019664.1 Olea europaea HOM05D003469 ORTHO05D004084 1.3e-96 357.5 363 50.1
SGA_v2.0_scaffold8G04312 Striga asiatica HOM05D003469 ORTHO05D004084 2.2e-96 356.7 330 55.5
FAN27G0386 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.1e-95 354.4 359 54.6
Ah.15g095790 Amaranthus hybridus HOM05D003469 ORTHO05D004084 7.1e-95 351.7 405 48.6
Dinv15687 Davidia involucrata HOM05D003469 ORTHO05D004084 1.6e-94 350.5 335 56.7
Pp3c8_10360 Physcomitrium patens HOM05D003469 ORTHO05D004084 8.6e-93 344.7 345 51.0
Pp3c8_10366 Physcomitrium patens HOM05D003469 ORTHO05D004084 8.6e-93 344.7 345 51.0
SHI03012 Sapria himalayana HOM05D003469 ORTHO05D004084 1.4e-90 337.4 272 61.8
Ciclev10026956m.g Citrus clementina HOM05D003469 ORTHO05D004084 3.4e-89 332.8 292 58.6
Mapoly0024s0108 Marchantia polymorpha HOM05D003469 ORTHO05D004084 8.4e-88 328.2 301 54.5
Ca_16139_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 1.2e-86 324.3 212 75.0
AagrBONN_evm.TU.Sc2ySwM_362.2764 Anthoceros agrestis HOM05D003469 ORTHO05D004084 6.2e-83 312.0 334 47.6
C04p00480 Brassica napus HOM05D003469 ORTHO05D004084 4.2e-79 299.3 195 69.7
HanXRQChr13g0406831 Helianthus annuus HOM05D003469 ORTHO05D004084 3.4e-73 279.6 195 66.2
FAN20G2279 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.2e-65 254.6 154 76.0
SEGI_08666 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 1.6e-62 244.2 178 65.2
FvH4_6g38050 Fragaria vesca HOM05D003469 ORTHO05D004084 2.1e-62 243.8 299 46.8
ATR1089G047 Amborella trichopoda HOM05D003469 ORTHO05D004084 3.9e-61 239.6 331 43.2
COL.COLO4_25120 Corchorus olitorius HOM05D003469 ORTHO05D004084 1.6e-54 217.6 335 43.0
CBR_g36749 Chara braunii HOM05D003469 ORTHO05D004084 6.7e-53 212.2 302 37.1
Thhalv10002713m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 5.9e-49 199.1 139 66.9
SEGI_05114 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 1.2e-38 164.9 145 58.6
Actinidia02459 Actinidia chinensis HOM05D003469 ORTHO05D004084 1.4e-37 161.4 120 62.5
BcaC02g12574 Brassica carinata HOM05D003469 ORTHO05D004084 4.4e-36 156.4 101 72.3
Cpa.g.sc21.244 Carica papaya HOM05D003469 ORTHO05D004084 1.0e-32 145.2 89 76.4
ECA232G2749 Erigeron canadensis HOM05D001807 ORTHO05D002044 2.9e-32 143.7 88 71.6
Rhsim02G0229800 Rhododendron simsii HOM05D000151 ORTHO05D000074 6.7e-29 132.5 80 80.0
Aa31LG2G17580 Aethionema arabicum HOM05D003469 ORTHO05D004084 8.8e-29 132.1 81 74.1
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 4.8e-27 126.3 114 52.6
ATR0002G001 Amborella trichopoda HOM05D003469 ORTHO05D004084 2.4e-26 124.0 84 63.1
Psat0s2166g0160 Pisum sativum HOM05D003469 ORTHO05D004084 1.1e-18 98.6 89 58.4
EL10Ac5g10434 Beta vulgaris HOM05D003469 ORTHO05D004084 2.9e-16 90.5 152 36.8
Sp4g05220 Schrenkiella parvula HOM05D003469 ORTHO05D004084 2.0e-12 77.8 51 66.7
Aa31LG2G17590 Aethionema arabicum HOM05D003469 ORTHO05D004084 1.0e-08 65.5 56 51.8
Cre10.g464950 Chlamydomonas reinhardtii HOM05D003469 ORTHO05D004084 3.6e-06 57.0 294 22.1


User provided reference genes

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