Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_19005_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 0.0e+00 4000.3 2057 100.0
Ca_30033_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 0.0e+00 3911.3 2047 98.6
Psat7g138160 Pisum sativum HOM05D004110 ORTHO05D004810 0.0e+00 3275.7 2036 83.8
Medtr4g075330 Medicago truncatula HOM05D004110 ORTHO05D004810 0.0e+00 3259.9 2059 82.7
Glyma.12G024600 Glycine max HOM05D004110 ORTHO05D004810 0.0e+00 2919.8 2053 74.8
Lj3g0009405 Lotus japonicus HOM05D004110 ORTHO05D004810 0.0e+00 2899.0 2038 75.0
TPR.G17192 Trifolium pratense HOM05D004110 ORTHO05D004810 0.0e+00 2899.0 2047 75.5
Lalb_Chr01g0001341 Lupinus albus HOM05D004110 ORTHO05D004810 0.0e+00 2861.6 2042 73.0
Phvul.011G026800 Phaseolus vulgaris HOM05D004110 ORTHO05D004810 0.0e+00 2833.5 2064 72.0
arahy.Tifrunner.gnm1.ann1.6KB8MN Arachis hypogaea HOM05D004110 ORTHO05D004810 0.0e+00 2691.8 2047 69.6
arahy.Tifrunner.gnm1.ann1.5454UR Arachis hypogaea HOM05D004110 ORTHO05D004810 0.0e+00 2646.3 2047 68.7
Cfa005187 Carpinus fangiana HOM05D004110 ORTHO05D004810 0.0e+00 2251.1 2068 59.1
CiPaw.06G125000 Carya illinoinensis HOM05D004110 ORTHO05D004810 0.0e+00 2250.3 2043 59.2
QL11p047649 Quercus lobata HOM05D004110 ORTHO05D004810 0.0e+00 2221.0 2152 57.0
Dinv04965 Davidia involucrata HOM05D004110 ORTHO05D004810 0.0e+00 2152.9 2075 56.6
Thecc.02G066600 Theobroma cacao HOM05D004110 ORTHO05D004810 0.0e+00 2097.8 2068 55.1
Gorai.008G034000 Gossypium raimondii HOM05D004110 ORTHO05D004810 0.0e+00 2077.8 2068 54.1
Actinidia29167 Actinidia chinensis HOM05D004110 ORTHO05D004810 0.0e+00 2074.3 2072 54.6
Prupe.8G161000 Prunus persica HOM05D004110 ORTHO05D004810 0.0e+00 2069.3 2049 55.3
Potri.009G130000 Populus trichocarpa HOM05D004110 ORTHO05D004810 0.0e+00 2064.7 2072 53.6
Manes.04G077900 Manihot esculenta HOM05D004110 ORTHO05D004810 0.0e+00 2062.0 2076 53.6
MD05G1116500 Malus domestica HOM05D004110 ORTHO05D004810 0.0e+00 2054.3 2076 55.0
CANSAT25G3021 Cannabis sativa HOM05D004110 ORTHO05D004810 0.0e+00 2053.5 2069 54.1
RcHm_v2.0_Chr6g0245151 Rosa chinensis HOM05D004110 ORTHO05D004810 0.0e+00 2044.2 2071 54.4
Gohir.D12G033200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 0.0e+00 2026.1 2068 53.2
GSVIVG01024075001 Vitis vinifera HOM05D004110 ORTHO05D004810 0.0e+00 2015.0 2082 54.1
Ciclev10027667m.g Citrus clementina HOM05D004110 ORTHO05D004810 0.0e+00 2007.3 2063 53.9
TAR376G1212 Trochodendron aralioides HOM05D004110 ORTHO05D004810 0.0e+00 1996.1 2056 53.9
Rhsim05G0062900 Rhododendron simsii HOM05D004110 ORTHO05D004810 0.0e+00 1987.2 2092 52.6
FAN15G2714 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 1975.7 2057 53.1
TWI79G0689 Tripterygium wilfordii HOM05D004110 ORTHO05D004810 0.0e+00 1974.9 2071 52.4
FvH4_2g01950 Fragaria vesca HOM05D004110 ORTHO05D004810 0.0e+00 1973.4 2066 52.8
Sabra09G0099400 Salix brachista HOM05D004110 ORTHO05D004810 0.0e+00 1970.7 2174 50.1
FAN20G3101 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 1964.9 2068 52.6
PGR142G1237 Punica granatum HOM05D004110 ORTHO05D004810 0.0e+00 1901.3 2076 50.9
FAN24G2945 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 1896.3 2280 48.1
Gohir.A12G039200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 0.0e+00 1885.2 1885 54.1
Lj5C184G3 Lonicera japonica HOM05D004110 ORTHO05D004810 0.0e+00 1846.2 2092 50.5
Cc02_g16480 Coffea canephora HOM05D004110 ORTHO05D004810 0.0e+00 1833.5 2111 48.9
Sed0006799 Sechium edule HOM05D004110 ORTHO05D004810 0.0e+00 1818.1 2080 49.7
THA.LOC104824773 Tarenaya hassleriana HOM05D004110 ORTHO05D004810 0.0e+00 1814.7 2078 48.2
DCAR_022780 Daucus carota HOM05D004110 ORTHO05D004810 0.0e+00 1812.3 2067 49.2
Migut.B00121 Erythranthe guttata HOM05D004110 ORTHO05D004810 0.0e+00 1788.9 2075 49.0
MSTRG.20018 Avicennia marina HOM05D004110 ORTHO05D004810 0.0e+00 1788.1 2072 48.1
AT4G38760 Arabidopsis thaliana HOM05D004110 ORTHO05D004810 0.0e+00 1779.2 2070 47.7
CsaV3_2G015750 Cucumis sativus L. HOM05D004110 ORTHO05D004810 0.0e+00 1776.9 2070 48.6
PSO675G3689 Papaver somniferum HOM05D004110 ORTHO05D004810 0.0e+00 1772.7 2060 48.9
Thhalv10024188m.g Eutrema salsugineum HOM05D004110 ORTHO05D004810 0.0e+00 1770.0 2069 48.2
AL7G10630 Arabidopsis lyrata HOM05D004110 ORTHO05D004810 0.0e+00 1768.1 2045 48.2
Carub.0007s0061 Capsella rubella HOM05D004110 ORTHO05D004810 0.0e+00 1766.9 2066 47.6
Sp7g37050 Schrenkiella parvula HOM05D004110 ORTHO05D004810 0.0e+00 1765.0 2067 48.1
PSO541G0713 Papaver somniferum HOM05D004110 ORTHO05D004810 0.0e+00 1764.6 2083 48.2
Sopen11g016530 Solanum pennellii HOM05D004110 ORTHO05D004810 0.0e+00 1755.7 2077 48.0
BolC7t46773H Brassica oleracea HOM05D004110 ORTHO05D004810 0.0e+00 1742.6 2069 47.3
C07p63600 Brassica napus HOM05D004110 ORTHO05D004810 0.0e+00 1742.2 2069 47.2
A06p48910 Brassica napus HOM05D004110 ORTHO05D004810 0.0e+00 1738.0 2069 47.3
BraA06t27759Z Brassica rapa HOM05D004110 ORTHO05D004810 0.0e+00 1736.5 2069 47.2
Sc18g0006650 Simmondsia chinensis HOM05D004110 ORTHO05D004810 0.0e+00 1721.4 2050 47.7
Nitab4.5_0007580g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 0.0e+00 1717.6 2203 45.6
Aqoxy2G01068 Aquilegia oxysepala HOM05D004110 ORTHO05D004810 0.0e+00 1715.3 2073 47.7
Hund00042 Selenicereus undatus HOM05D004110 ORTHO05D004810 0.0e+00 1680.2 2043 46.6
EL10Ac9g21435 Beta vulgaris HOM05D004110 ORTHO05D004810 0.0e+00 1675.6 2175 44.6
MBI05_g07505_MAGBIO Magnolia biondii HOM05D004110 ORTHO05D004810 0.0e+00 1672.1 2114 46.6
Ah.01g022610 Amaranthus hybridus HOM05D004110 ORTHO05D004810 0.0e+00 1665.6 2071 45.8
ECA234G0434 Erigeron canadensis HOM05D004110 ORTHO05D004810 0.0e+00 1661.4 2069 46.6
Aa31LG6G16440 Aethionema arabicum HOM05D004110 ORTHO05D004810 0.0e+00 1660.6 2108 45.8
HanXRQChr10g0299011 Helianthus annuus HOM05D004110 ORTHO05D004810 0.0e+00 1644.0 2041 47.0
AUR62013086 Chenopodium quinoa HOM05D004110 ORTHO05D004810 0.0e+00 1623.2 2112 43.9
SGA_v2.0_scaffold58G20427 Striga asiatica HOM05D004110 ORTHO05D004810 0.0e+00 1617.1 2070 44.7
Lsat_1_v5_gn_4_74700 Lactuca sativa HOM05D004110 ORTHO05D004810 0.0e+00 1609.0 2043 46.6
Solyc11g039880.2 Solanum lycopersicum HOM05D004110 ORTHO05D004810 0.0e+00 1609.0 1927 47.4
BcaNung01969 Brassica carinata HOM05D004110 ORTHO05D004810 0.0e+00 1583.5 2046 44.7
Eucgr.I01378 Eucalyptus grandis HOM05D004110 ORTHO05D004810 0.0e+00 1557.3 1804 49.1
Nn5g29099 Nelumbo nucifera HOM05D004110 ORTHO05D004810 0.0e+00 1526.5 2076 44.4
ATR0810G267 Amborella trichopoda HOM05D004110 ORTHO05D004810 0.0e+00 1450.3 2089 42.0
Peaxi162Scf00684g00023 Petunia axillaris HOM05D004110 ORTHO05D004810 0.0e+00 1394.0 2066 42.3
Duzib248G0147 Durio zibethinus HOM05D004110 ORTHO05D004810 0.0e+00 1335.5 1488 50.2
Haze_02193 Corylus avellana HOM05D004110 ORTHO05D004810 0.0e+00 1294.6 1453 52.2
Cpa.g.sc37.187 Carica papaya HOM05D004110 ORTHO05D004810 0.0e+00 1287.3 1588 47.5
vmacro17377 Vaccinium macrocarpon HOM05D004110 ORTHO05D004810 0.0e+00 1219.5 1488 48.3
CSS0024884 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 0.0e+00 1218.8 1280 53.8
Oeu014463.1 Olea europaea HOM05D004110 ORTHO05D004810 0.0e+00 1146.7 2402 35.0
unitig_21.g20818 Utricularia gibba HOM05D004110 ORTHO05D004810 9.6e-303 1044.6 2092 34.9
AUR62010090 Chenopodium quinoa HOM05D004110 ORTHO05D004810 1.0e-275 954.9 1264 44.0
Pp3c5_12360 Physcomitrium patens HOM05D004110 ORTHO05D004810 7.2e-266 922.2 2140 30.9
CAN.G603.1 Capsicum annuum HOM05D004110 ORTHO05D004810 5.2e-264 916.0 1242 44.2
Mapoly0001s0208 Marchantia polymorpha HOM05D004110 ORTHO05D004810 3.4e-255 886.7 2149 30.3
Nitab4.5_0006590g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 4.0e-240 836.6 1090 45.0
Nitab4.5_0006590g0020 Nicotiana tabacum HOM05D004110 ORTHO05D004810 2.2e-238 830.9 851 51.8
AagrBONN_evm.TU.Sc2ySwM_344.4164 Anthoceros agrestis HOM05D004110 ORTHO05D004810 3.0e-235 820.5 2189 28.5
Haze_02194 Corylus avellana HOM05D004110 ORTHO05D004810 2.1e-228 797.7 665 62.9
vmacro17378 Vaccinium macrocarpon HOM05D004110 ORTHO05D004810 1.1e-224 785.4 584 66.3
MELO3C020789.2 Cucumis melo HOM05D004110 ORTHO05D004810 1.8e-224 784.6 1026 44.7
MD10G1119400 Malus domestica HOM05D004110 ORTHO05D004810 1.2e-207 728.8 793 52.0
SEGI_22139 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 1.3e-182 645.6 1512 30.8
ClCG02G011600 Citrullus lanatus HOM05D004110 ORTHO05D004810 1.4e-179 635.6 756 47.6
HPP92_005008 Vanilla planifolia HOM05D004110 ORTHO05D004810 4.1e-176 624.0 916 39.2
CARHR294450 Cardamine hirsuta HOM05D004110 ORTHO05D004810 3.8e-174 617.5 755 47.2
Glyma.11G098600 Glycine max HOM05D004110 ORTHO05D004810 1.6e-172 612.1 433 73.0
Cpa.g.sc37.188 Carica papaya HOM05D004110 ORTHO05D004810 1.4e-171 609.0 475 65.3
Zm00001eb026650 Zea mays HOM05D004110 ORTHO05D004810 3.1e-168 597.8 1269 34.2
CDE05G0764 Ceratophyllum demersum HOM05D004110 ORTHO05D004810 1.1e-160 572.8 718 44.3
Glyma.11G098551 Glycine max HOM05D004110 ORTHO05D004810 1.3e-158 565.8 335 80.9
CAN.G603.2 Capsicum annuum HOM05D004110 ORTHO05D004810 1.4e-155 555.8 821 41.4
Potri.004G168700 Populus trichocarpa HOM05D004110 ORTHO05D004810 7.5e-146 523.5 811 43.5
FAN27G1057 Fragaria x ananassa HOM05D004110 ORTHO05D004810 1.2e-143 516.2 548 51.8
COL.COLO4_17262 Corchorus olitorius HOM05D004110 ORTHO05D004810 4.7e-132 477.6 784 39.0
SHI05691 Sapria himalayana HOM05D004110 ORTHO05D004810 8.0e-124 450.3 506 48.2
CBR_g5647 Chara braunii HOM05D004110 ORTHO05D004810 1.9e-117 429.1 2279 23.0
MD10G1119600 Malus domestica HOM05D004110 ORTHO05D004810 9.5e-117 426.8 387 58.4
SEGI_22669 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 7.6e-106 390.6 759 36.2
SHI05701 Sapria himalayana HOM05D004110 ORTHO05D004810 5.3e-99 367.9 623 39.5
HPP92_005015 Vanilla planifolia HOM05D004110 ORTHO05D004810 6.0e-79 301.2 627 33.7
Os10g0154600 Oryza sativa ssp. japonica HOM05D004110 ORTHO05D004810 5.6e-77 294.7 640 33.4
CSS0003289 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 1.2e-71 276.9 207 64.7
ClCG02G011580 Citrullus lanatus HOM05D004110 ORTHO05D004810 4.3e-69 268.5 232 56.9
Lj3g0004699 Lotus japonicus HOM05D004110 ORTHO05D004810 1.5e-58 233.4 179 68.7
MD10G1119500 Malus domestica HOM05D004110 ORTHO05D004810 2.7e-55 222.6 206 54.9
Duzib248G1214 Durio zibethinus HOM05D004110 ORTHO05D004810 2.0e-53 216.5 179 62.6
SMO171G0108 Selaginella moellendorffii HOM05D004110 ORTHO05D004810 1.0e-49 204.1 491 28.7
FAN27G2584 Fragaria x ananassa HOM05D004110 ORTHO05D004810 7.4e-45 188.0 139 64.7
TPR.G40846 Trifolium pratense HOM05D004110 ORTHO05D004810 9.1e-43 181.0 121 81.0
COL.COLO4_17260 Corchorus olitorius HOM05D004110 ORTHO05D004810 1.3e-41 177.2 586 27.8
SEGI_07180 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 4.7e-39 168.7 350 33.4
MD10G1119100 Malus domestica HOM05D004110 ORTHO05D004810 2.0e-37 163.3 132 64.4
Solyc11g039890.2 Solanum lycopersicum HOM05D004110 ORTHO05D004810 2.2e-36 159.8 148 54.1
CSS0008861 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 4.1e-35 155.6 129 62.0
CSS0015162 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 7.7e-34 151.4 100 73.0
COL.COLO4_17261 Corchorus olitorius HOM05D004110 ORTHO05D004810 1.1e-27 131.0 425 27.8
MCO14G095 Micromonas commoda HOM05D004110 ORTHO05D004810 1.1e-27 131.0 576 24.7
arahy.Tifrunner.gnm1.ann1.G8A5JV Arachis hypogaea HOM05D004110 ORTHO05D004810 9.1e-27 127.9 91 70.3
Psat5g216640 Pisum sativum HOM05D000564 ORTHO05D015028 9.1e-27 127.9 153 47.7
ClCG02G011590 Citrullus lanatus HOM05D004110 ORTHO05D004810 1.6e-26 127.1 118 55.1
Hma1.2p1_0032F.1_g019640 Hydrangea macrophylla HOM05D004110 ORTHO05D004810 1.7e-25 123.6 94 64.9
Psat1g093160 Pisum sativum HOM05D004110 ORTHO05D004810 6.6e-25 121.7 71 80.3
ClCG02G011550 Citrullus lanatus HOM05D004110 ORTHO05D004810 4.2e-24 119.0 149 48.3
TPR.G30321 Trifolium pratense HOM05D004110 ORTHO05D004810 1.2e-23 117.5 74 83.8
Gohir.A12G039250 Gossypium hirsutum HOM05D004110 ORTHO05D004810 1.6e-23 117.1 97 59.8
Psat0s2087g0160 Pisum sativum HOM05D001944 ORTHO05D002405 1.4e-22 114.0 168 44.6
AUR62040642 Chenopodium quinoa HOM05D004110 ORTHO05D004810 3.0e-22 112.8 112 52.7
SHI05700 Sapria himalayana HOM05D004110 ORTHO05D004810 6.8e-22 111.7 125 44.0
Zm00001eb026660 Zea mays HOM05D004110 ORTHO05D004810 1.2e-21 110.9 124 42.7
CSS0014003 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 9.2e-19 101.3 91 57.1
Psat0s2088g0120 Pisum sativum HOM05D001944 ORTHO05D002405 1.6e-18 100.5 153 43.1
Ciclev10029869m.g Citrus clementina HOM05D004110 ORTHO05D004810 2.0e-18 100.1 134 44.0
HPP92_005007 Vanilla planifolia HOM05D004110 ORTHO05D004810 2.7e-18 99.8 696 22.8
Psat5g172200 Pisum sativum HOM05D001670 ORTHO05D015028 3.9e-17 95.9 68 64.7
Duzib248G0615 Durio zibethinus HOM05D004110 ORTHO05D004810 2.1e-15 90.1 167 36.5
Psat0s5229g0080 Pisum sativum HOM05D006670 ORTHO05D006513 3.6e-15 89.4 54 85.2
VMungo0464G1786 Vigna mungo HOM05D004110 ORTHO05D004810 3.6e-15 89.4 89 58.4
Os10g0154566 Oryza sativa ssp. japonica HOM05D004110 ORTHO05D004810 4.7e-15 89.0 122 38.5
SHI05699 Sapria himalayana HOM05D004110 ORTHO05D004810 1.0e-14 87.8 156 34.0
BolC8t52466H Brassica oleracea HOM05D004110 ORTHO05D004810 2.3e-14 86.7 86 51.2
Glyma.19G036450 Glycine max HOM05D004110 ORTHO05D004810 1.2e-13 84.3 72 61.1
Psat5g035760 Pisum sativum HOM05D001673 ORTHO05D020227 2.0e-13 83.6 51 84.3
AagrBONN_evm.TU.Sc2ySwM_344.4149 Anthoceros agrestis HOM05D004110 ORTHO05D004810 1.7e-12 80.5 140 33.6
SEGI_16576 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 1.9e-11 77.0 226 29.6
BcaB03g12223 Brassica carinata HOM05D004110 ORTHO05D004810 4.1e-11 75.9 134 41.0
Psat6g113120 Pisum sativum HOM05D020801 ORTHO05D004810 9.2e-11 74.7 53 67.9
SHI05692 Sapria himalayana HOM05D004110 ORTHO05D004810 9.2e-11 74.7 69 52.2
HanXRQChr09g0252681 Helianthus annuus HOM05D004110 ORTHO05D004810 1.2e-10 74.3 59 54.2
SHI05698 Sapria himalayana HOM05D004110 ORTHO05D004810 7.8e-10 71.6 84 40.5
arahy.Tifrunner.gnm1.ann1.9L03M9 Arachis hypogaea HOM05D004110 ORTHO05D004810 3.0e-09 69.7 43 76.7
Psat5g096880 Pisum sativum HOM05D020801 ORTHO05D004810 4.3e-08 65.9 44 70.5
Psat5g096920 Pisum sativum HOM05D020801 ORTHO05D004810 4.3e-08 65.9 44 70.5
Psat7g001600 Pisum sativum HOM05D020801 ORTHO05D004810 4.3e-08 65.9 44 70.5
Sabra04G0113100 Salix brachista HOM05D004110 ORTHO05D004810 5.6e-08 65.5 106 43.4
FAN24G1876 Fragaria x ananassa HOM05D000827 ORTHO05D001318 3.6e-07 62.8 59 54.2


User provided reference genes

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