Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_18860_v3 Cicer arietinum L. HOM05D006362 ORTHO05D008295 0.0e+00 1079.7 555 100.0
TPR.G25875 Trifolium pratense HOM05D006362 ORTHO05D008295 3.4e-295 1017.7 553 93.3
Psat7g162880 Pisum sativum HOM05D006362 ORTHO05D008295 2.9e-294 1014.6 553 93.5
Medtr4g081050 Medicago truncatula HOM05D006362 ORTHO05D008295 1.1e-293 1012.7 553 92.9
Lj3g0015245 Lotus japonicus HOM05D006362 ORTHO05D008295 1.2e-284 982.6 551 90.0
Lalb_Chr03g0030071 Lupinus albus HOM05D006362 ORTHO05D008295 1.4e-280 969.1 554 88.3
Phvul.011G136800 Phaseolus vulgaris HOM05D006362 ORTHO05D008295 1.4e-280 969.1 552 88.4
Glyma.06G271800 Glycine max HOM05D006362 ORTHO05D008295 2.7e-276 954.9 553 87.7
arahy.Tifrunner.gnm1.ann1.Z96I2W Arachis hypogaea HOM05D006362 ORTHO05D008295 6.3e-273 943.7 554 85.4
arahy.Tifrunner.gnm1.ann1.GJJ2CM Arachis hypogaea HOM05D006362 ORTHO05D008295 3.1e-272 941.4 555 84.9
Prupe.4G206200 Prunus persica HOM05D006362 ORTHO05D008295 1.7e-254 882.5 552 79.9
MD03G1209000 Malus domestica HOM05D006362 ORTHO05D008295 3.3e-250 868.2 546 79.3
Cfa020397 Carpinus fangiana HOM05D006362 ORTHO05D008295 9.7e-250 866.7 552 78.3
RcHm_v2.0_Chr4g0399351 Rosa chinensis HOM05D006362 ORTHO05D008295 1.7e-249 865.9 555 78.2
QL08p012554 Quercus lobata HOM05D006362 ORTHO05D008295 4.8e-249 864.4 546 78.6
GSVIVG01001989001 Vitis vinifera HOM05D006362 ORTHO05D008295 4.8e-249 864.4 553 78.1
FvH4_4g07170 Fragaria vesca HOM05D006362 ORTHO05D008295 1.0e-246 856.7 554 77.8
FAN12G0341 Fragaria x ananassa HOM05D006362 ORTHO05D008295 1.7e-246 855.9 554 77.8
FAN22G0212 Fragaria x ananassa HOM05D006362 ORTHO05D008295 2.2e-246 855.5 556 77.2
Potri.011G135800 Populus trichocarpa HOM05D006362 ORTHO05D008295 2.2e-246 855.5 550 78.2
TAR626G1624 Trochodendron aralioides HOM05D006362 ORTHO05D008295 8.5e-246 853.6 553 77.2
Thecc.07G046200 Theobroma cacao HOM05D006362 ORTHO05D008295 1.1e-245 853.2 555 76.0
Atru.chr2.3247 Acer truncatum HOM05D006362 ORTHO05D008295 1.2e-244 849.7 553 77.8
Gorai.002G084800 Gossypium raimondii HOM05D006362 ORTHO05D008295 1.2e-244 849.7 555 76.2
Gohir.A01G076501 Gossypium hirsutum HOM05D006362 ORTHO05D008295 3.6e-244 848.2 555 75.9
Manes.15G074800 Manihot esculenta HOM05D006362 ORTHO05D008295 3.6e-244 848.2 554 78.0
TWI38G1299 Tripterygium wilfordii HOM05D006362 ORTHO05D008295 4.7e-244 847.8 551 77.9
Ciclev10007871m.g Citrus clementina HOM05D006362 ORTHO05D008295 1.0e-243 846.7 553 77.2
CsaV3_1G044730 Cucumis sativus L. HOM05D006362 ORTHO05D008295 3.3e-242 841.6 553 75.8
CANSAT11G0353 Cannabis sativa HOM05D006362 ORTHO05D008295 9.7e-242 840.1 553 76.5
Dinv40729 Davidia involucrata HOM05D006362 ORTHO05D008295 1.7e-241 839.3 553 76.3
MELO3C018085.2 Cucumis melo HOM05D006362 ORTHO05D008295 1.4e-240 836.3 553 75.0
Hma1.2p1_1344F.1_g277040 Hydrangea macrophylla HOM05D006362 ORTHO05D008295 5.3e-240 834.3 544 77.2
Duzib268G0905 Durio zibethinus HOM05D006362 ORTHO05D008295 9.1e-240 833.6 555 74.6
Gohir.D01G064000 Gossypium hirsutum HOM05D006362 ORTHO05D008295 3.5e-239 831.6 555 75.1
Eucgr.F03442 Eucalyptus grandis HOM05D006362 ORTHO05D008295 4.5e-239 831.2 553 75.4
Sed0025840 Sechium edule HOM05D006362 ORTHO05D008295 4.5e-239 831.2 553 74.3
Nn1g07069 Nelumbo nucifera HOM05D006362 ORTHO05D008295 2.2e-238 828.9 548 75.0
Haze_09637 Corylus avellana HOM05D006362 ORTHO05D008295 2.9e-238 828.6 600 71.2
PGR031G2573 Punica granatum HOM05D006362 ORTHO05D008295 5.2e-235 817.8 555 75.1
Nitab4.5_0002342g0020 Nicotiana tabacum HOM05D006362 ORTHO05D008295 2.7e-231 805.4 546 74.7
Aqoxy1G03661 Aquilegia oxysepala HOM05D006362 ORTHO05D008295 1.0e-230 803.5 551 73.3
Solyc10g006410.3 Solanum lycopersicum HOM05D006362 ORTHO05D008295 1.0e-230 803.5 546 73.6
HanXRQChr13g0407741 Helianthus annuus HOM05D006362 ORTHO05D008295 2.9e-230 802.0 546 73.4
THA.LOC104818092 Tarenaya hassleriana HOM05D006362 ORTHO05D008295 5.0e-230 801.2 552 73.2
Sopen10g002360 Solanum pennellii HOM05D006362 ORTHO05D008295 1.9e-229 799.3 546 73.3
PSO832G4364 Papaver somniferum HOM05D006362 ORTHO05D008295 2.5e-229 798.9 550 73.3
Oeu021406.2 Olea europaea HOM05D006362 ORTHO05D008295 5.5e-229 797.7 557 71.6
Sc14g0006480 Simmondsia chinensis HOM05D006362 ORTHO05D008295 8.0e-228 793.9 559 71.7
CAN.G1781.12 Capsicum annuum HOM05D006362 ORTHO05D008295 2.3e-227 792.3 551 72.6
Cc05_g13400 Coffea canephora HOM05D006362 ORTHO05D008295 1.5e-226 789.6 551 72.1
ECA240G1610 Erigeron canadensis HOM05D006362 ORTHO05D008295 1.5e-226 789.6 546 72.9
Sp3g13370 Schrenkiella parvula HOM05D006362 ORTHO05D008295 2.9e-222 775.4 557 71.8
AUR62020525 Chenopodium quinoa HOM05D006362 ORTHO05D008295 3.8e-222 775.0 553 70.7
COL.COLO4_09973 Corchorus olitorius HOM05D004186 ORTHO05D006965 3.8e-222 775.0 556 70.7
Aa31LG8G2360 Aethionema arabicum HOM05D006362 ORTHO05D008295 5.0e-222 774.6 557 70.9
AT3G15160 Arabidopsis thaliana HOM05D006362 ORTHO05D008295 6.6e-222 774.2 557 71.1
BolC3t17030H Brassica oleracea HOM05D006362 ORTHO05D008295 8.6e-222 773.9 557 71.6
A03p39180 Brassica napus HOM05D006362 ORTHO05D008295 1.1e-221 773.5 557 71.6
C03p47540 Brassica napus HOM05D006362 ORTHO05D008295 1.5e-221 773.1 557 71.5
BraA03t13067Z Brassica rapa HOM05D006362 ORTHO05D008295 1.5e-221 773.1 557 71.5
Carub.0003s1481 Capsella rubella HOM05D006362 ORTHO05D008295 1.5e-221 773.1 557 72.0
CARHR090140 Cardamine hirsuta HOM05D006362 ORTHO05D008295 1.5e-221 773.1 555 71.5
Thhalv10020417m.g Eutrema salsugineum HOM05D006362 ORTHO05D008295 1.5e-221 773.1 557 71.6
Gorai.009G425700 Gossypium raimondii HOM05D006362 ORTHO05D008295 2.5e-221 772.3 555 69.7
AL3G27550 Arabidopsis lyrata HOM05D006362 ORTHO05D008295 4.3e-221 771.5 557 71.5
DCAR_022536 Daucus carota HOM05D006362 ORTHO05D008295 2.1e-220 769.2 574 69.3
FAN17G1244 Fragaria x ananassa HOM05D006362 ORTHO05D008295 1.0e-219 766.9 575 69.9
ATR0697G203 Amborella trichopoda HOM05D006362 ORTHO05D008295 1.4e-219 766.5 548 71.0
Rhsim06G0213400 Rhododendron simsii HOM05D006362 ORTHO05D008295 3.4e-218 761.9 599 68.6
Ah.06g182950 Amaranthus hybridus HOM05D006362 ORTHO05D008295 1.7e-217 759.6 562 68.7
EL10Ac4g07932 Beta vulgaris HOM05D006362 ORTHO05D008295 1.6e-215 753.1 561 68.4
HPP92_009387 Vanilla planifolia HOM05D006362 ORTHO05D008295 5.0e-214 748.0 553 68.5
Peaxi162Scf00387g00613 Petunia axillaris HOM05D006362 ORTHO05D008295 1.9e-213 746.1 545 69.9
BcaC01g03890 Brassica carinata HOM05D006362 ORTHO05D008295 3.3e-213 745.3 579 67.4
ClCG05G014560 Citrullus lanatus HOM05D006362 ORTHO05D008295 9.5e-213 743.8 571 67.8
CDE05G0917 Ceratophyllum demersum HOM05D006362 ORTHO05D008295 4.7e-212 741.5 549 69.0
Lsat_1_v5_gn_5_81640 Lactuca sativa HOM05D006362 ORTHO05D008295 8.0e-212 740.7 552 69.7
Gohir.A04G020300 Gossypium hirsutum HOM05D006362 ORTHO05D008295 4.1e-208 728.4 555 66.8
SGA_v2.0_scaffold80G25930 Striga asiatica HOM05D006362 ORTHO05D008295 1.2e-207 726.9 558 66.5
Sabra11G0122000 Salix brachista HOM05D006362 ORTHO05D008295 5.0e-206 721.5 592 66.0
Nitab4.5_0002229g0190 Nicotiana tabacum HOM05D006362 ORTHO05D008295 3.6e-204 715.3 567 67.0
Os04g0626900 Oryza sativa ssp. japonica HOM05D006362 ORTHO05D008295 6.2e-204 714.5 551 65.2
Lj1C868T5 Lonicera japonica HOM05D006362 ORTHO05D008295 8.9e-203 710.7 523 70.6
AUR62015672 Chenopodium quinoa HOM05D006362 ORTHO05D008295 1.7e-201 706.4 564 64.9
Migut.M01793 Erythranthe guttata HOM05D006362 ORTHO05D008295 6.4e-201 704.5 553 64.9
CiPaw.11G185900 Carya illinoinensis HOM05D006362 ORTHO05D008295 2.8e-196 689.1 430 81.9
Hund23291 Selenicereus undatus HOM05D006362 ORTHO05D008295 1.3e-185 653.7 497 67.4
Gohir.D05G366200 Gossypium hirsutum HOM05D006362 ORTHO05D008295 4.8e-172 608.6 430 70.5
vmacro11753 Vaccinium macrocarpon HOM05D006362 ORTHO05D008295 9.6e-165 584.3 675 49.9
Mapoly0021s0009 Marchantia polymorpha HOM05D006362 ORTHO05D008295 6.5e-161 571.6 561 56.3
Pp3c24_12510 Physcomitrium patens HOM05D006362 ORTHO05D008295 5.5e-160 568.5 552 55.4
SMO115G0345 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 1.8e-147 526.9 552 53.1
AagrBONN_evm.TU.Sc2ySwM_117.2426 Anthoceros agrestis HOM05D006362 ORTHO05D008295 4.7e-143 512.3 554 49.5
Pp3c23_6050 Physcomitrium patens HOM05D006362 ORTHO05D008295 2.8e-140 503.1 553 52.3
BolC3t17019H Brassica oleracea HOM05D006362 ORTHO05D008295 1.8e-123 447.2 324 70.7
PGSC0003DMG403014396 Solanum tuberosum HOM05D006362 ORTHO05D008295 6.6e-105 385.6 261 73.9
HPP92_009392 Vanilla planifolia HOM05D006362 ORTHO05D008295 1.7e-97 360.9 275 65.8
Zm00001eb070060 Zea mays HOM05D006362 ORTHO05D008295 1.8e-94 350.9 310 58.4
CSS0013960 Camellia sinensis var. sinensis HOM05D006362 ORTHO05D008295 3.7e-92 343.2 222 77.5
PGSC0003DMG402014396 Solanum tuberosum HOM05D006362 ORTHO05D008295 9.6e-72 275.4 190 70.5
Rhsim12G0205700 Rhododendron simsii HOM05D006362 ORTHO05D008295 5.6e-56 223.0 296 48.0
SEGI_18975 Sequoiadendron giganteum HOM05D006362 ORTHO05D008295 9.3e-51 205.7 164 64.0
CBR_g57499 Chara braunii HOM05D006362 ORTHO05D008295 2.1e-47 194.5 240 42.1
Cpa.g.sc131.92 Carica papaya HOM05D006362 ORTHO05D008295 8.4e-44 182.6 116 77.6
VMungo0251G2436 Vigna mungo HOM05D006362 ORTHO05D008295 8.4e-44 182.6 115 80.9
SHI31860 Sapria himalayana HOM05D006362 ORTHO05D008295 1.9e-43 181.4 147 61.9
Gorai.002G084600 Gossypium raimondii HOM05D006362 ORTHO05D008295 7.4e-40 169.5 120 67.5
Gohir.D01G063866 Gossypium hirsutum HOM05D006362 ORTHO05D008295 3.4e-37 160.6 120 64.2
SEGI_13710 Sequoiadendron giganteum HOM05D006362 ORTHO05D008295 1.5e-32 145.2 132 56.8
Hma1.2p1_1609F.1_g293480 Hydrangea macrophylla HOM05D006362 ORTHO05D008295 3.1e-30 137.5 104 68.3
HPP92_009393 Vanilla planifolia HOM05D006362 ORTHO05D008295 3.7e-23 114.0 85 64.7
SMO347G0562 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 2.4e-22 111.3 179 39.7
CBR_g57501 Chara braunii HOM05D006362 ORTHO05D008295 1.7e-20 105.1 142 42.3
HanXRQChr16g0507081 Helianthus annuus HOM05D006362 ORTHO05D008295 1.7e-20 105.1 82 67.1
SMO228G0126 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 5.0e-20 103.6 189 37.0
SMO167G0061 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 6.3e-15 86.7 142 42.3
SMO111G0176 Selaginella moellendorffii HOM05D013632 ORTHO05D008295 1.4e-14 85.5 95 45.3
Cc02_g13940 Coffea canephora HOM05D006362 ORTHO05D008295 1.9e-11 75.1 55 72.7
SMO122G0015 Selaginella moellendorffii HOM05D006362 ORTHO05D374567 1.0e-09 69.3 96 39.6
BcaB04g20946 Brassica carinata HOM05D006362 ORTHO05D008295 4.0e-09 67.4 45 68.9
SMO014G0021 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 8.8e-09 66.2 175 31.4
Cpa.g.sc131.91 Carica papaya HOM05D006362 ORTHO05D116658 2.6e-08 64.7 37 81.1
Lsat_1_v5_gn_3_32440 Lactuca sativa HOM05D006362 ORTHO05D228842 4.4e-08 63.9 51 68.6
SMO009G0006 Selaginella moellendorffii HOM05D013632 ORTHO05D379378 7.5e-08 63.2 141 33.3
SMO118G0508 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 1.7e-07 62.0 208 26.9
RcHm_v2.0_Chr4g0399371 Rosa chinensis HOM05D006362 ORTHO05D341637 9.1e-06 56.2 40 70.0


User provided reference genes

Program Settings