Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_18271_v3 Cicer arietinum L. HOM05D004468 ORTHO05D008180 7.4e-130 467.2 240 100.0
TPR.G4895 Trifolium pratense HOM05D004468 ORTHO05D008180 2.9e-110 402.1 238 86.6
Medtr4g096660 Medicago truncatula HOM05D004468 ORTHO05D008180 1.1e-101 373.6 264 76.1
Psat7g090880 Pisum sativum HOM05D004468 ORTHO05D008180 3.2e-101 372.1 241 81.7
Glyma.05G129400 Glycine max HOM05D004468 ORTHO05D008180 7.3e-85 317.8 240 70.8
Lj4g0016525 Lotus japonicus HOM05D004468 ORTHO05D008180 2.0e-82 309.7 240 70.4
Phvul.002G194400 Phaseolus vulgaris HOM05D004468 ORTHO05D008180 3.7e-81 305.4 242 67.4
Glyma.08G084100 Glycine max HOM05D004468 ORTHO05D008180 1.9e-80 303.1 241 68.0
VMungo0251G1661 Vigna mungo HOM05D004468 ORTHO05D008180 1.4e-75 287.0 242 64.5
Lalb_Chr13g0291991 Lupinus albus HOM05D004468 ORTHO05D008180 5.2e-75 285.0 240 67.1
arahy.Tifrunner.gnm1.ann1.2E3FWC Arachis hypogaea HOM05D004468 ORTHO05D008180 1.7e-70 270.0 228 66.7
QL05p059278 Quercus lobata HOM05D004468 ORTHO05D008180 9.3e-56 221.1 240 54.2
Dinv30712 Davidia involucrata HOM05D004468 ORTHO05D008180 7.8e-55 218.0 242 56.2
Prupe.4G077100 Prunus persica HOM05D004468 ORTHO05D008180 8.1e-52 208.0 239 51.5
MD10G1264900 Malus domestica HOM05D004468 ORTHO05D008180 1.1e-51 207.6 240 51.7
MD05G1288800 Malus domestica HOM05D004468 ORTHO05D008180 5.8e-50 201.8 240 50.8
Dinv05249 Davidia involucrata HOM05D004468 ORTHO05D008180 1.3e-49 200.7 242 53.7
Thecc.06G154000 Theobroma cacao HOM05D004468 ORTHO05D008180 2.2e-49 199.9 240 51.2
Manes.15G119000 Manihot esculenta HOM05D004468 ORTHO05D008180 2.9e-49 199.5 239 49.0
Haze_05549 Corylus avellana HOM05D004468 ORTHO05D008180 8.4e-49 198.0 241 50.6
CiPaw.09G126600 Carya illinoinensis HOM05D004468 ORTHO05D008180 1.1e-48 197.6 239 51.5
Duzib235G1094 Durio zibethinus HOM05D004468 ORTHO05D008180 1.4e-48 197.2 238 50.8
COL.COLO4_06070 Corchorus olitorius HOM05D004468 ORTHO05D008180 1.9e-48 196.8 240 50.8
Ciclev10016464m.g Citrus clementina HOM05D004468 ORTHO05D008180 4.2e-48 195.7 241 50.2
Dinv33636 Davidia involucrata HOM05D004468 ORTHO05D008180 5.4e-48 195.3 242 52.9
Potri.011G080000 Populus trichocarpa HOM05D004468 ORTHO05D008180 7.1e-48 194.9 240 49.2
Cfa000973 Carpinus fangiana HOM05D004468 ORTHO05D008180 2.1e-47 193.4 240 49.2
Duzib160G0871 Durio zibethinus HOM05D004468 ORTHO05D008180 1.8e-46 190.3 239 49.4
Gorai.011G042000 Gossypium raimondii HOM05D004468 ORTHO05D008180 6.7e-46 188.3 240 48.3
Gohir.A10G039100 Gossypium hirsutum HOM05D004468 ORTHO05D008180 1.1e-45 187.6 240 48.3
Gohir.A05G150000 Gossypium hirsutum HOM05D004468 ORTHO05D008180 1.6e-44 183.7 238 46.2
Gorai.009G156700 Gossypium raimondii HOM05D004468 ORTHO05D008180 8.1e-44 181.4 238 46.2
Duzib192G0660 Durio zibethinus HOM05D004468 ORTHO05D008180 2.0e-42 176.8 239 48.1
Sabra11G0068700 Salix brachista HOM05D004468 ORTHO05D008180 2.0e-42 176.8 240 46.2
Sabra11G0070800 Salix brachista HOM05D004468 ORTHO05D008180 2.0e-42 176.8 240 46.2
TWI53G1884 Tripterygium wilfordii HOM05D004468 ORTHO05D008180 4.5e-42 175.6 240 46.7
CiPaw.10G093500 Carya illinoinensis HOM05D004468 ORTHO05D008180 5.8e-42 175.3 238 47.9
Gohir.D05G152600 Gossypium hirsutum HOM05D004468 ORTHO05D008180 1.7e-41 173.7 238 45.4
Atru.chr10.1342 Acer truncatum HOM05D004468 ORTHO05D008180 1.9e-40 170.2 244 46.3
vmacro10945 Vaccinium macrocarpon HOM05D004468 ORTHO05D008180 7.1e-40 168.3 237 44.7
Manes.17G067600 Manihot esculenta HOM05D004468 ORTHO05D008180 4.6e-39 165.6 240 44.6
Hma1.2p1_0164F.1_g073090 Hydrangea macrophylla HOM05D004468 ORTHO05D008180 6.0e-39 165.2 241 47.7
Cc09_g09510 Coffea canephora HOM05D004468 ORTHO05D008180 1.5e-37 160.6 240 45.0
Aqoxy1G01779 Aquilegia oxysepala HOM05D004468 ORTHO05D008180 3.3e-37 159.5 242 45.0
Nitab4.5_0001040g0150 Nicotiana tabacum HOM05D004468 ORTHO05D008180 4.3e-37 159.1 240 46.2
Sopen02g019960 Solanum pennellii HOM05D004468 ORTHO05D008180 4.3e-37 159.1 243 46.5
RhsimUnG0149400 Rhododendron simsii HOM05D004468 ORTHO05D008180 7.4e-37 158.3 240 43.3
Sc17g0005060 Simmondsia chinensis HOM05D004468 ORTHO05D008180 2.1e-36 156.8 239 45.6
Solyc02g070880.1 Solanum lycopersicum HOM05D004468 ORTHO05D008180 2.8e-36 156.4 243 45.7
PGSC0003DMG400008295 Solanum tuberosum HOM05D004468 ORTHO05D008180 3.7e-36 156.0 241 46.1
CAN.G257.6 Capsicum annuum HOM05D004468 ORTHO05D008180 8.2e-36 154.8 241 44.8
CsaV3_6G051560 Cucumis sativus L. HOM05D004468 ORTHO05D008180 1.4e-35 154.1 244 42.2
RcHm_v2.0_Chr5g0013411 Rosa chinensis HOM05D004468 ORTHO05D008180 2.4e-35 153.3 244 43.0
TAR629G0415 Trochodendron aralioides HOM05D004468 ORTHO05D008180 5.3e-35 152.1 246 44.7
FvH4_3g06000 Fragaria vesca HOM05D004468 ORTHO05D008180 2.0e-34 150.2 241 42.7
Peaxi162Scf00291g00015 Petunia axillaris HOM05D004468 ORTHO05D008180 2.6e-34 149.8 202 47.5
Sed0007839 Sechium edule HOM05D004468 ORTHO05D008180 2.6e-34 149.8 243 42.4
FAN21G2255 Fragaria x ananassa HOM05D004468 ORTHO05D008180 7.6e-34 148.3 241 42.3
MD05G1288000 Malus domestica HOM05D004468 ORTHO05D008180 7.6e-34 148.3 215 45.6
THA.LOC104820641 Tarenaya hassleriana HOM05D004468 ORTHO05D008180 2.2e-33 146.7 228 44.7
FAN16G0098 Fragaria x ananassa HOM05D004468 ORTHO05D008180 3.8e-33 146.0 241 41.9
FAN25G3280 Fragaria x ananassa HOM05D004468 ORTHO05D008180 4.9e-33 145.6 241 41.9
FAN11G2204 Fragaria x ananassa HOM05D004468 ORTHO05D008180 8.4e-33 144.8 240 41.7
MD05G1288300 Malus domestica HOM05D004468 ORTHO05D008180 8.4e-33 144.8 215 45.1
PSO541G2725 Papaver somniferum HOM05D004468 ORTHO05D008180 1.9e-32 143.7 239 43.1
PSO675G1482 Papaver somniferum HOM05D004468 ORTHO05D008180 9.3e-32 141.4 239 43.5
Nn4g26508 Nelumbo nucifera HOM05D004468 ORTHO05D008180 3.5e-31 139.4 221 45.2
MSTRG.13248 Avicennia marina HOM05D004468 ORTHO05D008180 4.6e-31 139.0 244 41.0
Hund21515 Selenicereus undatus HOM05D004468 ORTHO05D008180 1.0e-30 137.9 207 43.5
MSTRG.14764 Avicennia marina HOM05D004468 ORTHO05D008180 3.0e-30 136.3 238 42.0
Sp1g25810 Schrenkiella parvula HOM05D004468 ORTHO05D008180 3.0e-30 136.3 238 42.0
Oeu052384.1 Olea europaea HOM05D004468 ORTHO05D008180 6.7e-30 135.2 241 39.8
Migut.H01376 Erythranthe guttata HOM05D004468 ORTHO05D008180 1.9e-29 133.7 242 38.4
Gohir.D10G039900 Gossypium hirsutum HOM05D004468 ORTHO05D008180 2.5e-29 133.3 239 41.0
Thhalv10009888m.g Eutrema salsugineum HOM05D004468 ORTHO05D008180 3.3e-29 132.9 240 42.1
SalBow6G4733 Salvia bowleyana HOM05D004468 ORTHO05D008180 9.7e-29 131.3 212 42.0
SalBow7G0317 Salvia bowleyana HOM05D004468 ORTHO05D008180 1.3e-28 131.0 212 42.0
Sed0014650 Sechium edule HOM05D004468 ORTHO05D008180 4.8e-28 129.0 242 38.4
THA.LOC104812665 Tarenaya hassleriana HOM05D004468 ORTHO05D008180 1.4e-27 127.5 228 39.9
BcaB03g13850 Brassica carinata HOM05D004468 ORTHO05D008180 6.9e-27 125.2 237 40.9
RhsimUnG0174800 Rhododendron simsii HOM05D004468 ORTHO05D008180 1.0e-25 121.3 225 38.2
AL1G43790 Arabidopsis lyrata HOM05D004468 ORTHO05D008180 7.2e-24 115.2 239 37.7
Lj1P1184T76 Lonicera japonica HOM05D004468 ORTHO05D008180 9.3e-24 114.8 214 40.7
C07p15630 Brassica napus HOM05D004468 ORTHO05D008180 1.8e-22 110.5 220 38.2
unitig_8.g4884 Utricularia gibba HOM05D004468 ORTHO05D008180 3.0e-22 109.8 241 33.6
Nn3g20652 Nelumbo nucifera HOM05D004468 ORTHO05D008180 8.7e-22 108.2 165 43.6
CANSAT35G0919 Cannabis sativa HOM05D004468 ORTHO05D008180 1.1e-21 107.8 241 37.8
Os01g0626900 Oryza sativa ssp. japonica HOM05D004468 ORTHO05D008180 1.5e-21 107.5 206 39.3
Nitab4.5_0001655g0240 Nicotiana tabacum HOM05D004468 ORTHO05D008180 2.5e-21 106.7 239 35.6
A08p24790 Brassica napus HOM05D004468 ORTHO05D008180 9.7e-21 104.8 238 35.7
BraA08t34433Z Brassica rapa HOM05D004468 ORTHO05D008180 9.7e-21 104.8 238 35.7
Dinv32278 Davidia involucrata HOM05D004468 ORTHO05D011136 1.3e-20 104.4 130 45.4
Oeu040960.2 Olea europaea HOM05D004468 ORTHO05D008180 1.3e-20 104.4 204 38.7
BcaC01g00145 Brassica carinata HOM05D004468 ORTHO05D008180 8.2e-20 101.7 239 36.0
CDE02G0697 Ceratophyllum demersum HOM05D004468 ORTHO05D008180 1.1e-19 101.3 217 36.4
Actinidia39559 Actinidia chinensis HOM05D004468 ORTHO05D008180 2.4e-19 100.1 231 32.9
THA.LOC104814285 Tarenaya hassleriana HOM05D004468 ORTHO05D008180 2.4e-19 100.1 214 35.5
Actinidia07680 Actinidia chinensis HOM05D004468 ORTHO05D011136 4.1e-19 99.4 217 35.9
C03p76270 Brassica napus HOM05D004468 ORTHO05D008180 1.5e-18 97.4 238 35.3
BolC3t19884H Brassica oleracea HOM05D004468 ORTHO05D008180 1.5e-18 97.4 238 35.3
BcaB03g12186 Brassica carinata HOM05D004468 ORTHO05D008180 1.7e-17 94.0 231 34.6
CARHR029490 Cardamine hirsuta HOM05D004468 ORTHO05D008180 2.2e-17 93.6 241 32.4
Lsat_1_v5_gn_1_96101 Lactuca sativa HOM05D004468 ORTHO05D008180 2.2e-17 93.6 191 39.8
Os02g0315600 Oryza sativa ssp. japonica HOM05D004468 ORTHO05D008180 2.9e-17 93.2 204 37.3
BcaC06g35475 Brassica carinata HOM05D004468 ORTHO05D008180 6.5e-17 92.0 219 33.8
BolC7t42051H Brassica oleracea HOM05D004468 ORTHO05D008180 6.5e-17 92.0 219 33.8
Carub.0001s2818 Capsella rubella HOM05D004468 ORTHO05D008180 6.5e-17 92.0 254 31.9
MD05G1288500 Malus domestica HOM05D004468 ORTHO05D008180 3.2e-16 89.7 108 55.6
AT1G29950 Arabidopsis thaliana HOM05D004468 ORTHO05D008180 4.2e-16 89.4 239 31.8
QL05p059480 Quercus lobata HOM05D004468 ORTHO05D008180 4.7e-15 85.9 130 47.7
MELO3C007151.2 Cucumis melo HOM05D004468 ORTHO05D008180 2.3e-14 83.6 243 30.5
Os03g0591300 Oryza sativa ssp. japonica HOM05D004468 ORTHO05D008180 5.1e-14 82.4 229 34.5
Lsat_1_v5_gn_7_32861 Lactuca sativa HOM05D004468 ORTHO05D008180 3.3e-13 79.7 200 35.0
Eucgr.D00317 Eucalyptus grandis HOM05D004468 ORTHO05D008180 2.2e-12 77.0 240 29.2
HanXRQChr04g0118301 Helianthus annuus HOM05D004468 ORTHO05D008180 3.7e-12 76.3 201 34.3
A07p10110 Brassica napus HOM05D004468 ORTHO05D008180 8.2e-12 75.1 212 31.6
Zm00001eb384990 Zea mays HOM05D004468 ORTHO05D008180 4.1e-11 72.8 208 32.2
ECA236G0629 Erigeron canadensis HOM05D004468 ORTHO05D011136 2.0e-10 70.5 173 37.0
HanXRQChr12g0382221 Helianthus annuus HOM05D004468 ORTHO05D008180 2.9e-09 66.6 113 47.8
BraA07t28804Z Brassica rapa HOM05D004468 ORTHO05D008180 1.4e-08 64.3 209 29.2
C07p15610 Brassica napus HOM05D004468 ORTHO05D008180 2.7e-07 60.1 106 38.7
Aqoxy6G01464 Aquilegia oxysepala HOM05D001755 ORTHO05D001665 3.6e-07 59.7 237 27.0
Migut.L01931 Erythranthe guttata HOM05D001755 ORTHO05D001665 8.0e-07 58.5 205 27.8
Lsat_1_v5_gn_1_2200 Lactuca sativa HOM05D001755 ORTHO05D001665 3.0e-06 56.6 218 29.4
CDE08G0998 Ceratophyllum demersum HOM05D004468 ORTHO05D011136 8.8e-06 55.1 138 34.8


User provided reference genes

Program Settings