Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_18046_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 7.2e-311 1069.7 529 100.0
TPR.G17069 Trifolium pratense HOM05D004097 ORTHO05D005352 1.1e-239 833.2 438 88.4
Medtr8g080290 Medicago truncatula HOM05D004097 ORTHO05D005352 8.4e-235 817.0 439 86.3
Psat7g078280 Pisum sativum HOM05D004097 ORTHO05D005352 7.1e-234 813.9 441 85.9
Lj4g0020055 Lotus japonicus HOM05D004097 ORTHO05D005352 6.5e-227 790.8 438 83.3
Glyma.05G146400 Glycine max HOM05D004097 ORTHO05D005352 4.2e-226 788.1 437 82.4
arahy.Tifrunner.gnm1.ann1.7LT28F Arachis hypogaea HOM05D004097 ORTHO05D005352 9.3e-226 786.9 438 82.6
arahy.Tifrunner.gnm1.ann1.11CB4V Arachis hypogaea HOM05D004097 ORTHO05D005352 1.2e-225 786.6 438 82.6
Psat7g078160 Pisum sativum HOM05D004097 ORTHO05D005352 2.7e-225 785.4 438 82.9
Medtr8g080360 Medicago truncatula HOM05D004097 ORTHO05D005352 7.9e-225 783.9 438 82.9
Glyma.05G146500 Glycine max HOM05D004097 ORTHO05D005352 1.8e-224 782.7 438 82.4
TPR.G17087 Trifolium pratense HOM05D004097 ORTHO05D005352 3.9e-224 781.6 438 83.1
Ca_18044_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 1.3e-222 776.5 438 82.2
Lalb_Chr13g0294221 Lupinus albus HOM05D004097 ORTHO05D005352 2.8e-222 775.4 437 82.6
VMungo0251G0768 Vigna mungo HOM05D004097 ORTHO05D005352 2.2e-219 765.8 438 81.5
Phvul.002G174800 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 5.3e-213 744.6 438 79.7
Lalb_Chr13g0294231 Lupinus albus HOM05D004097 ORTHO05D005352 1.2e-212 743.4 438 78.5
Ca_18045_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 2.0e-207 726.1 469 76.5
Cfa009333 Carpinus fangiana HOM05D004097 ORTHO05D005352 7.4e-207 724.2 429 76.5
QL03p053766 Quercus lobata HOM05D004097 ORTHO05D005352 3.7e-206 721.8 429 76.0
CiPaw.05G112000 Carya illinoinensis HOM05D004097 ORTHO05D005352 3.4e-204 715.3 432 75.5
GSVIVG01010441001 Vitis vinifera HOM05D004097 ORTHO05D005352 6.7e-200 701.0 434 73.5
PGR102G2071 Punica granatum HOM05D004097 ORTHO05D005352 3.3e-199 698.7 434 71.2
Eucgr.B03480 Eucalyptus grandis HOM05D004097 ORTHO05D005352 9.7e-199 697.2 434 73.0
Manes.13G018100 Manihot esculenta HOM05D004097 ORTHO05D005352 2.4e-197 692.6 435 72.4
Rhsim12G0102000 Rhododendron simsii HOM05D004097 ORTHO05D005352 2.4e-197 692.6 447 72.0
COL.COLO4_20377 Corchorus olitorius HOM05D004097 ORTHO05D005352 3.1e-197 692.2 438 71.9
Gohir.D01G154900 Gossypium hirsutum HOM05D004097 ORTHO05D005352 4.1e-197 691.8 438 71.7
RcHm_v2.0_Chr4g0430631 Rosa chinensis HOM05D004097 ORTHO05D005352 4.1e-197 691.8 428 72.2
Thecc.02G212500 Theobroma cacao HOM05D004097 ORTHO05D005352 7.0e-197 691.0 438 71.5
Gorai.002G191800 Gossypium raimondii HOM05D004097 ORTHO05D005352 9.1e-197 690.6 438 71.5
TWI36G0618 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 2.6e-196 689.1 443 71.6
Cc00_g13540 Coffea canephora HOM05D004097 ORTHO05D005352 4.5e-196 688.3 442 70.4
Glyma.08G103233 Glycine max HOM05D004097 ORTHO05D005352 1.3e-195 686.8 432 74.8
Duzib251G0245 Durio zibethinus HOM05D004097 ORTHO05D005352 1.7e-195 686.4 434 71.2
TWI18G1202 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 1.7e-195 686.4 435 72.4
Duzib248G1376 Durio zibethinus HOM05D004097 ORTHO05D005352 2.9e-195 685.6 438 70.8
Prupe.1G228800 Prunus persica HOM05D004097 ORTHO05D005352 2.9e-195 685.6 434 71.9
Gohir.A01G155000 Gossypium hirsutum HOM05D004097 ORTHO05D005352 5.0e-195 684.9 438 71.0
MD13G1116700 Malus domestica HOM05D004097 ORTHO05D005352 5.0e-195 684.9 434 71.7
FAN17G1448 Fragaria x ananassa HOM05D004097 ORTHO05D005352 1.1e-194 683.7 428 72.2
MD16G1117400 Malus domestica HOM05D004097 ORTHO05D005352 1.1e-194 683.7 434 70.7
CSS0021321 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 9.4e-194 680.6 429 71.3
FAN07G0057 Fragaria x ananassa HOM05D004097 ORTHO05D005352 2.1e-193 679.5 428 71.5
Lj6C825T6 Lonicera japonica HOM05D004097 ORTHO05D005352 2.7e-193 679.1 435 71.5
Ciclev10030695m.g Citrus clementina HOM05D004097 ORTHO05D005352 6.1e-193 677.9 434 70.7
FvH4_4g23960 Fragaria vesca HOM05D004097 ORTHO05D005352 1.8e-192 676.4 428 72.0
Potri.010G059000 Populus trichocarpa HOM05D004097 ORTHO05D005352 1.8e-192 676.4 429 72.0
CSS0033535 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 3.0e-192 675.6 429 70.9
FAN12G2099 Fragaria x ananassa HOM05D004097 ORTHO05D005352 1.2e-191 673.7 428 71.5
CANSAT01G0794 Cannabis sativa HOM05D004097 ORTHO05D005352 2.8e-190 669.1 429 70.6
CsaV3_5G030370 Cucumis sativus L. HOM05D004097 ORTHO05D005352 1.1e-189 667.2 432 70.1
TAR629G3065 Trochodendron aralioides HOM05D004097 ORTHO05D005352 1.4e-189 666.8 467 67.5
ClCG11G013780 Citrullus lanatus HOM05D004097 ORTHO05D005352 2.4e-189 666.0 429 70.4
Nn4g22358 Nelumbo nucifera HOM05D004097 ORTHO05D005352 9.1e-189 664.1 431 71.0
MELO3C011876.2 Cucumis melo HOM05D004097 ORTHO05D005352 1.6e-188 663.3 446 68.2
Aqoxy5G03417 Aquilegia oxysepala HOM05D004097 ORTHO05D005352 4.5e-188 661.8 435 69.7
Sed0007371 Sechium edule HOM05D004097 ORTHO05D005352 4.5e-188 661.8 426 70.9
Hund25455 Selenicereus undatus HOM05D004097 ORTHO05D005352 5.9e-188 661.4 441 67.8
HanXRQChr17g0540261 Helianthus annuus HOM05D004097 ORTHO05D005352 2.2e-187 659.4 438 68.3
MSTRG.7991 Avicennia marina HOM05D004097 ORTHO05D005352 2.9e-187 659.1 429 70.4
Oeu019032.1 Olea europaea HOM05D004097 ORTHO05D005352 3.2e-186 655.6 430 69.3
Sabra10G0046600 Salix brachista HOM05D004097 ORTHO05D005352 4.2e-186 655.2 432 69.4
ECA246G4064 Erigeron canadensis HOM05D004097 ORTHO05D005352 5.5e-186 654.8 437 67.7
Nitab4.5_0002174g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 5.5e-186 654.8 432 69.2
Nitab4.5_0005179g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 1.6e-185 653.3 432 69.2
Sp5g22470 Schrenkiella parvula HOM05D004097 ORTHO05D005352 2.7e-185 652.5 430 68.8
BraA07t30877Z Brassica rapa HOM05D004097 ORTHO05D005352 2.3e-184 649.4 430 68.4
EL10Ac6g13480 Beta vulgaris HOM05D004097 ORTHO05D005352 4.0e-184 648.7 441 66.4
PSO017G2193 Papaver somniferum HOM05D004097 ORTHO05D005352 4.0e-184 648.7 435 69.2
A07p32530 Brassica napus HOM05D004097 ORTHO05D005352 5.2e-184 648.3 430 68.1
MBI11_g07450_MAGBIO Magnolia biondii HOM05D004097 ORTHO05D005352 8.8e-184 647.5 431 68.7
Solyc05g015220.3 Solanum lycopersicum HOM05D004097 ORTHO05D005352 8.8e-184 647.5 432 68.3
Sopen05g010470 Solanum pennellii HOM05D004097 ORTHO05D005352 8.8e-184 647.5 432 68.3
SGA_v2.0_scaffold130G34253 Striga asiatica HOM05D004097 ORTHO05D005352 1.2e-183 647.1 430 69.1
C06p38670 Brassica napus HOM05D004097 ORTHO05D005352 1.5e-183 646.7 430 68.1
BolC6t38956H Brassica oleracea HOM05D004097 ORTHO05D005352 2.6e-183 646.0 430 67.9
Carub.0002s1382 Capsella rubella HOM05D004097 ORTHO05D005352 4.4e-183 645.2 442 66.5
AT1G67490 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 9.8e-183 644.0 430 67.4
PSO478G3686 Papaver somniferum HOM05D004097 ORTHO05D005352 2.2e-182 642.9 435 68.5
AL2G26080 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 3.7e-182 642.1 445 65.2
Ah.02g130710 Amaranthus hybridus HOM05D004097 ORTHO05D005352 6.3e-182 641.3 431 66.1
AL1G40600 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 6.3e-182 641.3 447 64.0
Migut.K00711 Erythranthe guttata HOM05D004097 ORTHO05D005352 8.3e-182 641.0 429 67.6
THA.LOC104807884 Tarenaya hassleriana HOM05D004097 ORTHO05D005352 1.4e-181 640.2 440 65.2
CAN.G1548.3 Capsicum annuum HOM05D004097 ORTHO05D005352 7.0e-181 637.9 432 68.3
CAN.G311.73 Capsicum annuum HOM05D004097 ORTHO05D005352 7.0e-181 637.9 432 68.3
Thhalv10018104m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 9.1e-181 637.5 430 67.2
CARHR026770 Cardamine hirsuta HOM05D004097 ORTHO05D005352 2.7e-180 636.0 447 64.0
Peaxi162Scf00128g01140 Petunia axillaris HOM05D004097 ORTHO05D005352 2.7e-180 636.0 432 67.8
BolC7t42308H Brassica oleracea HOM05D004097 ORTHO05D005352 4.5e-180 635.2 439 65.1
SalBow2G2696 Salvia bowleyana HOM05D004097 ORTHO05D005352 5.9e-180 634.8 429 67.4
Hma1.2p1_0668F.1_g200000 Hydrangea macrophylla HOM05D004097 ORTHO05D005352 7.7e-180 634.4 407 70.0
BcaC06g35272 Brassica carinata HOM05D004097 ORTHO05D005352 1.0e-179 634.0 437 65.2
Aa31sc781G10 Aethionema arabicum HOM05D004097 ORTHO05D005352 1.3e-179 633.6 445 65.8
C07p17980 Brassica napus HOM05D004097 ORTHO05D005352 5.0e-179 631.7 437 65.0
CARHR060060 Cardamine hirsuta HOM05D004097 ORTHO05D005352 8.6e-179 630.9 430 66.5
Thhalv10006835m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 8.6e-179 630.9 441 64.2
Actinidia20697 Actinidia chinensis HOM05D004097 ORTHO05D005352 1.1e-178 630.6 390 73.6
AT1G24320 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 4.2e-178 628.6 435 64.4
HPP92_023192 Vanilla planifolia HOM05D004097 ORTHO05D005352 4.2e-178 628.6 433 66.5
Sp1g23450 Schrenkiella parvula HOM05D004097 ORTHO05D005352 5.5e-178 628.2 437 65.0
Dinv14824 Davidia involucrata HOM05D004097 ORTHO05D005352 4.0e-176 622.1 389 73.5
PSO675G1898 Papaver somniferum HOM05D004097 ORTHO05D005352 8.9e-176 620.9 442 64.5
BcaB03g13994 Brassica carinata HOM05D004097 ORTHO05D005352 2.6e-175 619.4 437 64.1
BcaB03g13996 Brassica carinata HOM05D004097 ORTHO05D005352 1.3e-174 617.1 442 63.3
A07p12040 Brassica napus HOM05D004097 ORTHO05D005352 8.3e-174 614.4 468 60.3
AUR62005598 Chenopodium quinoa HOM05D004097 ORTHO05D005352 1.8e-173 613.2 424 65.1
Zm00001eb143210 Zea mays HOM05D004097 ORTHO05D005352 1.6e-172 610.1 433 64.2
ATR0561G059 Amborella trichopoda HOM05D004097 ORTHO05D005352 3.5e-172 609.0 429 65.5
Os01g0921200 Oryza sativa ssp. japonica HOM05D004097 ORTHO05D005352 3.5e-172 609.0 433 63.7
Lsat_1_v5_gn_3_29780 Lactuca sativa HOM05D004097 ORTHO05D005352 9.5e-170 600.9 437 63.8
Aa31LG7G6710 Aethionema arabicum HOM05D004097 ORTHO05D005352 3.6e-169 599.0 447 61.7
BcaB03g15361 Brassica carinata HOM05D004097 ORTHO05D005352 9.8e-167 590.9 430 63.5
SEGI_39835 Sequoiadendron giganteum HOM05D004097 ORTHO05D005352 5.4e-165 585.1 428 64.5
AUR62024129 Chenopodium quinoa HOM05D004097 ORTHO05D005352 8.3e-158 561.2 415 61.0
VMungo0251G3103 Vigna mungo HOM05D004097 ORTHO05D005352 2.7e-156 556.2 325 78.8
Carub.0001s2575 Capsella rubella HOM05D004097 ORTHO05D005352 1.3e-155 553.9 391 64.2
CDE05G0715 Ceratophyllum demersum HOM05D004097 ORTHO05D005352 1.3e-155 553.9 436 60.1
SHI17952 Sapria himalayana HOM05D004097 ORTHO05D005352 1.9e-154 550.1 480 55.4
Oeu036882.3 Olea europaea HOM05D004097 ORTHO05D005352 3.5e-148 529.3 478 56.5
DCAR_031191 Daucus carota HOM05D004097 ORTHO05D005352 7.3e-146 521.5 429 57.3
SMO358G0259 Selaginella moellendorffii HOM05D004097 ORTHO05D005352 2.1e-145 520.0 464 54.1
Mapoly0071s0095 Marchantia polymorpha HOM05D004097 ORTHO05D005352 3.6e-145 519.2 444 55.4
Sp1g06290 Schrenkiella parvula HOM05D004097 ORTHO05D005352 1.7e-142 510.4 445 53.7
DCAR_026468 Daucus carota HOM05D004097 ORTHO05D005352 4.9e-142 508.8 449 55.7
Atru.chr11.2303 Acer truncatum HOM05D004097 ORTHO05D005352 4.6e-140 502.3 349 66.8
A10p06090 Brassica napus HOM05D004097 ORTHO05D005352 3.3e-138 496.1 438 54.6
CBR_g11887 Chara braunii HOM05D004097 ORTHO05D005352 9.6e-138 494.6 454 53.1
Pp3c11_13660 Physcomitrium patens HOM05D004097 ORTHO05D005352 6.2e-137 491.9 428 53.5
BolC5t29329H Brassica oleracea HOM05D004097 ORTHO05D005352 6.6e-131 471.9 465 51.0
Haze_12391 Corylus avellana HOM05D004097 ORTHO05D005352 1.9e-125 453.8 270 76.7
BcaB02g06725 Brassica carinata HOM05D004097 ORTHO05D005352 1.8e-120 437.2 436 50.5
Cre13.g579734 Chlamydomonas reinhardtii HOM05D004097 ORTHO05D005352 2.1e-116 423.7 469 45.8
C05p05580 Brassica napus HOM05D004097 ORTHO05D005352 4.6e-108 396.0 400 51.2
AagrBONN_evm.TU.Sc2ySwM_344.2645 Anthoceros agrestis HOM05D004097 ORTHO05D005352 1.2e-103 381.3 328 54.6
Sc04g0010030 Simmondsia chinensis HOM05D004097 ORTHO05D005352 1.4e-101 374.4 240 70.0
unitig_22.g6408 Utricularia gibba HOM05D004097 ORTHO05D005352 2.6e-87 327.0 243 60.9
Phvul.002G174901 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 1.1e-80 305.1 166 81.3
Haze_12390 Corylus avellana HOM05D004097 ORTHO05D005352 1.1e-69 268.5 176 69.9
Cfa024667 Carpinus fangiana HOM05D004097 ORTHO05D005352 1.2e-63 248.4 428 32.9
unitig_22.g6409 Utricularia gibba HOM05D004097 ORTHO05D005352 1.6e-63 248.1 162 65.4
Cpa.g.sc43.13 Carica papaya HOM05D004097 ORTHO05D005352 4.5e-63 246.5 202 55.4
Haze_12355 Corylus avellana HOM05D004097 ORTHO05D005352 4.7e-60 236.5 147 74.1
VMungo0251G3132 Vigna mungo HOM05D004097 ORTHO05D005352 1.5e-50 204.9 100 88.0
Oeu036881.1 Olea europaea HOM05D004097 ORTHO05D005352 7.5e-50 202.6 139 69.1
BraA10t42875Z Brassica rapa HOM05D004097 ORTHO05D108425 3.7e-49 200.3 294 38.8
Cpa.g.sc43.17 Carica papaya HOM05D004097 ORTHO05D116738 3.6e-44 183.7 113 72.6
RcHm_v2.0_Chr7g0216361 Rosa chinensis HOM05D004097 ORTHO05D005352 9.2e-40 169.1 193 47.7
TWI36G0648 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 4.6e-39 166.8 100 77.0
CAN.G49.23 Capsicum annuum HOM05D004097 ORTHO05D005352 1.4e-24 118.6 95 58.9
CAN.G49.22 Capsicum annuum HOM05D004097 ORTHO05D043419 3.5e-23 114.0 94 57.4
Cpa.g.sc43.15 Carica papaya HOM05D004097 ORTHO05D043419 1.9e-21 108.2 69 71.0
FAN22G1343 Fragaria x ananassa HOM05D004097 ORTHO05D005352 7.3e-21 106.3 66 71.2
Actinidia15016 Actinidia chinensis HOM05D004097 ORTHO05D005352 1.4e-16 92.0 60 70.0
Actinidia15017 Actinidia chinensis HOM05D004097 ORTHO05D055553 1.4e-16 92.0 95 51.6
Sabra10G0046700 Salix brachista HOM05D004097 ORTHO05D005352 8.7e-14 82.8 62 62.9
Actinidia15018 Actinidia chinensis HOM05D004097 ORTHO05D054282 4.3e-13 80.5 84 45.2
TAR624G1259 Trochodendron aralioides HOM05D000428 ORTHO05D009311 9.0e-11 72.8 35 82.9
TAR626G1714 Trochodendron aralioides HOM05D000428 ORTHO05D009311 2.6e-10 71.2 34 85.3
MBI03_g17125_MAGBIO Magnolia biondii HOM05D000089 ORTHO05D000104 1.3e-09 68.9 42 71.4


User provided reference genes

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