Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_18044_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 0.0e+00 1754.6 851 100.0
Psat7g078160 Pisum sativum HOM05D004097 ORTHO05D005352 0.0e+00 1636.7 853 92.0
TPR.G17087 Trifolium pratense HOM05D004097 ORTHO05D005352 0.0e+00 1630.2 854 91.9
Medtr8g080360 Medicago truncatula HOM05D004097 ORTHO05D005352 0.0e+00 1613.6 853 90.7
Lj4g0020055 Lotus japonicus HOM05D004097 ORTHO05D005352 0.0e+00 1538.1 853 85.5
Glyma.05G146500 Glycine max HOM05D004097 ORTHO05D005352 0.0e+00 1482.6 853 82.1
VMungo0251G0768 Vigna mungo HOM05D004097 ORTHO05D005352 0.0e+00 1468.4 853 81.8
Lalb_Chr13g0294221 Lupinus albus HOM05D004097 ORTHO05D005352 0.0e+00 1460.7 854 82.4
Phvul.002G174800 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 0.0e+00 1455.3 853 81.2
Psat7g078280 Pisum sativum HOM05D004097 ORTHO05D005352 0.0e+00 1446.0 854 81.5
TPR.G17069 Trifolium pratense HOM05D004097 ORTHO05D005352 0.0e+00 1443.3 854 81.6
arahy.Tifrunner.gnm1.ann1.11CB4V Arachis hypogaea HOM05D004097 ORTHO05D005352 0.0e+00 1438.3 857 79.8
arahy.Tifrunner.gnm1.ann1.7LT28F Arachis hypogaea HOM05D004097 ORTHO05D005352 0.0e+00 1425.2 857 79.3
Glyma.05G146400 Glycine max HOM05D004097 ORTHO05D005352 0.0e+00 1403.3 854 79.0
Ca_18045_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 0.0e+00 1385.2 882 78.1
Medtr8g080290 Medicago truncatula HOM05D004097 ORTHO05D005352 0.0e+00 1372.1 852 77.9
GSVIVG01010441001 Vitis vinifera HOM05D004097 ORTHO05D005352 0.0e+00 1277.7 849 70.8
QL03p053766 Quercus lobata HOM05D004097 ORTHO05D005352 0.0e+00 1273.8 851 69.7
Cfa009333 Carpinus fangiana HOM05D004097 ORTHO05D005352 0.0e+00 1266.5 851 70.3
CiPaw.05G112000 Carya illinoinensis HOM05D004097 ORTHO05D005352 0.0e+00 1261.5 852 70.4
Lalb_Chr13g0294231 Lupinus albus HOM05D004097 ORTHO05D005352 0.0e+00 1260.7 755 77.6
PGR102G2071 Punica granatum HOM05D004097 ORTHO05D005352 0.0e+00 1248.8 850 68.0
Manes.13G018100 Manihot esculenta HOM05D004097 ORTHO05D005352 0.0e+00 1243.4 850 68.2
CSS0021321 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1233.0 847 68.1
RcHm_v2.0_Chr4g0430631 Rosa chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1231.9 855 67.7
CSS0033535 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1231.1 847 68.1
Ciclev10030695m.g Citrus clementina HOM05D004097 ORTHO05D005352 0.0e+00 1224.9 850 68.1
Thecc.02G212500 Theobroma cacao HOM05D004097 ORTHO05D005352 0.0e+00 1223.4 854 66.6
Eucgr.B03480 Eucalyptus grandis HOM05D004097 ORTHO05D005352 0.0e+00 1221.5 850 67.3
TWI36G0618 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1219.1 850 67.2
MD13G1116700 Malus domestica HOM05D004097 ORTHO05D005352 0.0e+00 1216.1 854 67.2
Gorai.002G191800 Gossypium raimondii HOM05D004097 ORTHO05D005352 0.0e+00 1212.2 855 66.9
Potri.010G059000 Populus trichocarpa HOM05D004097 ORTHO05D005352 0.0e+00 1211.4 849 67.4
Duzib251G0245 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1209.5 851 66.9
Gohir.D01G154900 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1208.7 855 66.8
Prupe.1G228800 Prunus persica HOM05D004097 ORTHO05D005352 0.0e+00 1206.4 849 67.3
COL.COLO4_20377 Corchorus olitorius HOM05D004097 ORTHO05D005352 0.0e+00 1204.1 857 66.9
FvH4_4g23960 Fragaria vesca HOM05D004097 ORTHO05D005352 0.0e+00 1204.1 849 67.6
Lj6C825T6 Lonicera japonica HOM05D004097 ORTHO05D005352 0.0e+00 1204.1 880 65.2
Gohir.A01G155000 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1199.9 855 66.2
FAN07G0057 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1197.2 859 66.4
TWI18G1202 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1196.0 850 66.4
TAR629G3065 Trochodendron aralioides HOM05D004097 ORTHO05D005352 0.0e+00 1195.6 887 64.8
CANSAT01G0794 Cannabis sativa HOM05D004097 ORTHO05D005352 0.0e+00 1194.5 853 66.1
Hma1.2p1_0668F.1_g200000 Hydrangea macrophylla HOM05D004097 ORTHO05D005352 0.0e+00 1191.4 824 68.2
FAN17G1448 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1188.7 870 66.2
FAN12G2099 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1187.2 858 66.6
Rhsim12G0102000 Rhododendron simsii HOM05D004097 ORTHO05D005352 0.0e+00 1187.2 970 60.4
Duzib248G1376 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1183.7 858 65.2
CsaV3_5G030370 Cucumis sativus L. HOM05D004097 ORTHO05D005352 0.0e+00 1182.2 852 65.6
Dinv14824 Davidia involucrata HOM05D004097 ORTHO05D005352 0.0e+00 1179.5 810 68.9
Actinidia20697 Actinidia chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1177.2 812 68.3
ClCG11G013780 Citrullus lanatus HOM05D004097 ORTHO05D005352 0.0e+00 1175.2 854 65.6
Nn4g22358 Nelumbo nucifera HOM05D004097 ORTHO05D005352 0.0e+00 1173.3 853 64.7
PSO017G2193 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1163.7 856 65.3
HanXRQChr17g0540261 Helianthus annuus HOM05D004097 ORTHO05D005352 0.0e+00 1163.3 849 64.8
MELO3C011876.2 Cucumis melo HOM05D004097 ORTHO05D005352 0.0e+00 1162.5 852 64.6
MD16G1117400 Malus domestica HOM05D004097 ORTHO05D005352 0.0e+00 1162.1 859 65.4
Aqoxy5G03417 Aquilegia oxysepala HOM05D004097 ORTHO05D005352 0.0e+00 1157.5 864 64.9
PSO478G3686 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1153.7 856 64.6
Sed0007371 Sechium edule HOM05D004097 ORTHO05D005352 0.0e+00 1152.9 852 65.4
Cc00_g13540 Coffea canephora HOM05D004097 ORTHO05D005352 0.0e+00 1151.3 856 63.6
Sabra10G0046600 Salix brachista HOM05D004097 ORTHO05D005352 0.0e+00 1149.4 849 65.0
Hund25455 Selenicereus undatus HOM05D004097 ORTHO05D005352 0.0e+00 1146.7 852 63.7
Oeu019032.1 Olea europaea HOM05D004097 ORTHO05D005352 0.0e+00 1146.0 852 63.4
EL10Ac6g13480 Beta vulgaris HOM05D004097 ORTHO05D005352 0.0e+00 1142.1 853 64.2
ECA246G4064 Erigeron canadensis HOM05D004097 ORTHO05D005352 0.0e+00 1140.6 847 64.2
Sopen05g010470 Solanum pennellii HOM05D004097 ORTHO05D005352 0.0e+00 1129.0 851 63.6
Carub.0002s1382 Capsella rubella HOM05D004097 ORTHO05D005352 0.0e+00 1122.8 855 62.9
AT1G67490 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 0.0e+00 1122.5 852 62.4
MSTRG.7991 Avicennia marina HOM05D004097 ORTHO05D005352 0.0e+00 1119.8 799 64.8
CAN.G1548.3 Capsicum annuum HOM05D004097 ORTHO05D005352 0.0e+00 1118.6 851 63.0
MBI11_g07450_MAGBIO Magnolia biondii HOM05D004097 ORTHO05D005352 0.0e+00 1118.6 857 62.9
Sp5g22470 Schrenkiella parvula HOM05D004097 ORTHO05D005352 0.0e+00 1111.3 854 62.1
AL2G26080 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 0.0e+00 1105.1 886 59.9
THA.LOC104807884 Tarenaya hassleriana HOM05D004097 ORTHO05D005352 0.0e+00 1104.0 851 61.8
CAN.G311.73 Capsicum annuum HOM05D004097 ORTHO05D005352 0.0e+00 1103.6 875 61.3
BraA07t30877Z Brassica rapa HOM05D004097 ORTHO05D005352 0.0e+00 1101.3 859 61.7
Lsat_1_v5_gn_3_29780 Lactuca sativa HOM05D004097 ORTHO05D005352 0.0e+00 1096.6 848 62.3
BolC6t38956H Brassica oleracea HOM05D004097 ORTHO05D005352 0.0e+00 1095.9 859 61.4
A07p32530 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1094.7 860 61.5
Migut.K00711 Erythranthe guttata HOM05D004097 ORTHO05D005352 0.0e+00 1091.6 850 61.1
C06p38670 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1088.6 861 61.1
Thhalv10018104m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 0.0e+00 1085.1 890 60.0
ATR0561G059 Amborella trichopoda HOM05D004097 ORTHO05D005352 0.0e+00 1082.4 844 61.3
SalBow2G2696 Salvia bowleyana HOM05D004097 ORTHO05D005352 0.0e+00 1081.2 852 60.0
Aa31sc781G10 Aethionema arabicum HOM05D004097 ORTHO05D005352 0.0e+00 1075.5 874 60.0
Ah.02g130710 Amaranthus hybridus HOM05D004097 ORTHO05D005352 2.3e-311 1072.0 862 59.9
AUR62005598 Chenopodium quinoa HOM05D004097 ORTHO05D005352 1.9e-308 1062.4 873 59.0
PSO675G1898 Papaver somniferum HOM05D004097 ORTHO05D005352 3.6e-304 1048.1 779 63.2
HPP92_023192 Vanilla planifolia HOM05D004097 ORTHO05D005352 6.2e-304 1047.3 858 58.9
Atru.chr11.2303 Acer truncatum HOM05D004097 ORTHO05D005352 4.0e-303 1044.6 764 65.2
SGA_v2.0_scaffold130G34253 Striga asiatica HOM05D004097 ORTHO05D005352 8.9e-303 1043.5 816 60.7
Os01g0921200 Oryza sativa ssp. japonica HOM05D004097 ORTHO05D005352 1.7e-301 1039.3 773 61.7
Solyc05g015220.3 Solanum lycopersicum HOM05D004097 ORTHO05D005352 2.3e-298 1028.9 729 66.4
Zm00001eb143210 Zea mays HOM05D004097 ORTHO05D005352 4.3e-297 1024.6 775 60.8
AUR62024129 Chenopodium quinoa HOM05D004097 ORTHO05D005352 8.9e-295 1016.9 836 58.3
DCAR_031191 Daucus carota HOM05D004097 ORTHO05D005352 4.4e-294 1014.6 850 57.2
Sp1g23450 Schrenkiella parvula HOM05D004097 ORTHO05D005352 1.9e-292 1009.2 769 61.2
BcaB03g15361 Brassica carinata HOM05D004097 ORTHO05D005352 4.1e-292 1008.1 861 58.3
Peaxi162Scf00128g01140 Petunia axillaris HOM05D004097 ORTHO05D005352 1.0e-290 1003.4 720 65.3
CARHR026770 Cardamine hirsuta HOM05D004097 ORTHO05D005352 3.0e-290 1001.9 773 60.3
Thhalv10006835m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 5.1e-290 1001.1 769 61.0
AT1G24320 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 8.6e-290 1000.3 772 60.0
C07p17980 Brassica napus HOM05D004097 ORTHO05D005352 1.5e-289 999.6 774 60.5
AL1G40600 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 2.5e-289 998.8 774 59.7
BcaC06g35272 Brassica carinata HOM05D004097 ORTHO05D005352 4.7e-288 994.6 773 60.3
SEGI_39835 Sequoiadendron giganteum HOM05D004097 ORTHO05D005352 6.2e-288 994.2 846 57.3
BcaB03g13996 Brassica carinata HOM05D004097 ORTHO05D005352 1.1e-284 983.4 783 59.5
A07p12040 Brassica napus HOM05D004097 ORTHO05D005352 1.4e-284 983.0 806 58.3
CDE05G0715 Ceratophyllum demersum HOM05D004097 ORTHO05D005352 7.1e-284 980.7 850 56.4
SHI17952 Sapria himalayana HOM05D004097 ORTHO05D005352 9.2e-284 980.3 907 54.1
BcaB03g13994 Brassica carinata HOM05D004097 ORTHO05D005352 2.1e-280 969.1 785 58.7
BolC7t42308H Brassica oleracea HOM05D004097 ORTHO05D005352 3.8e-277 958.4 775 58.8
Carub.0001s2575 Capsella rubella HOM05D004097 ORTHO05D005352 2.9e-269 932.2 728 60.2
DCAR_026468 Daucus carota HOM05D004097 ORTHO05D005352 4.9e-269 931.4 860 54.8
Aa31LG7G6710 Aethionema arabicum HOM05D004097 ORTHO05D005352 1.9e-257 892.9 805 55.0
Mapoly0071s0095 Marchantia polymorpha HOM05D004097 ORTHO05D005352 1.3e-248 863.6 848 51.2
Sp1g06290 Schrenkiella parvula HOM05D004097 ORTHO05D005352 4.2e-244 848.6 780 52.9
SMO358G0259 Selaginella moellendorffii HOM05D004097 ORTHO05D005352 4.6e-243 845.1 835 50.5
Sc04g0010030 Simmondsia chinensis HOM05D004097 ORTHO05D005352 6.1e-243 844.7 646 63.0
A10p06090 Brassica napus HOM05D004097 ORTHO05D005352 7.9e-235 817.8 797 51.1
Pp3c11_13660 Physcomitrium patens HOM05D004097 ORTHO05D005352 3.0e-234 815.8 812 48.5
Haze_12390 Corylus avellana HOM05D004097 ORTHO05D005352 2.2e-232 809.7 599 65.6
CBR_g11887 Chara braunii HOM05D004097 ORTHO05D005352 1.3e-224 783.9 788 49.1
Ca_18046_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 2.0e-222 776.5 438 82.2
Nitab4.5_0005179g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 3.8e-221 772.3 629 60.1
Phvul.002G174901 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 1.7e-216 756.9 538 68.2
VMungo0251G3132 Vigna mungo HOM05D004097 ORTHO05D005352 2.7e-214 749.6 477 73.4
BcaB02g06725 Brassica carinata HOM05D004097 ORTHO05D005352 1.3e-205 720.7 779 48.7
CARHR060060 Cardamine hirsuta HOM05D004097 ORTHO05D005352 4.2e-204 715.7 471 69.6
Oeu036882.3 Olea europaea HOM05D004097 ORTHO05D005352 6.1e-203 711.8 622 56.9
Glyma.08G103233 Glycine max HOM05D004097 ORTHO05D005352 8.9e-202 708.0 432 75.9
Nitab4.5_0002174g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 2.2e-200 703.4 432 74.1
AagrBONN_evm.TU.Sc2ySwM_344.2645 Anthoceros agrestis HOM05D004097 ORTHO05D005352 2.5e-196 689.9 747 47.5
Glyma.08G103167 Glycine max HOM05D004097 ORTHO05D005352 2.8e-187 659.8 406 79.1
BolC5t29329H Brassica oleracea HOM05D004097 ORTHO05D005352 3.7e-176 622.9 662 50.2
unitig_22.g6409 Utricularia gibba HOM05D004097 ORTHO05D005352 1.2e-169 601.3 583 50.4
Cre13.g579734 Chlamydomonas reinhardtii HOM05D004097 ORTHO05D005352 6.4e-168 595.5 870 39.3
VMungo0251G3103 Vigna mungo HOM05D004097 ORTHO05D005352 5.6e-156 555.8 324 79.6
C05p05580 Brassica napus HOM05D004097 ORTHO05D005352 1.0e-149 535.0 583 50.1
Haze_12355 Corylus avellana HOM05D004097 ORTHO05D005352 2.1e-139 500.7 778 39.2
Haze_12391 Corylus avellana HOM05D004097 ORTHO05D005352 3.1e-130 470.3 269 79.9
Cpa.g.sc1279.1 Carica papaya HOM05D004097 ORTHO05D005352 1.7e-123 448.0 435 53.6
Nitab4.5_0002174g0020 Nicotiana tabacum HOM05D004097 ORTHO05D005352 9.7e-108 395.6 338 56.2
FAN22G1343 Fragaria x ananassa HOM05D004097 ORTHO05D005352 1.6e-105 388.3 421 51.8
Prupe.1G228900 Prunus persica HOM05D004097 ORTHO05D005352 2.6e-105 387.5 395 53.4
MD16G1117300 Malus domestica HOM05D004097 ORTHO05D005352 3.6e-102 377.1 398 51.3
unitig_22.g6408 Utricularia gibba HOM05D004097 ORTHO05D005352 2.2e-91 341.3 242 64.5
BraA10t42875Z Brassica rapa HOM05D004097 ORTHO05D108425 5.8e-76 290.0 815 29.2
Ca_18056_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 4.1e-74 283.9 167 75.4
Cfa024667 Carpinus fangiana HOM05D004097 ORTHO05D005352 4.6e-73 280.4 530 32.8
Cpa.g.sc43.13 Carica papaya HOM05D004097 ORTHO05D005352 2.2e-67 261.5 202 59.4
Nitab4.5_0005179g0020 Nicotiana tabacum HOM05D004097 ORTHO05D036916 1.7e-64 251.9 200 59.5
Oeu036881.1 Olea europaea HOM05D004097 ORTHO05D005352 2.6e-52 211.5 139 69.1
Cpa.g.sc43.17 Carica papaya HOM05D004097 ORTHO05D116738 2.1e-46 191.8 116 72.4
RcHm_v2.0_Chr7g0216361 Rosa chinensis HOM05D004097 ORTHO05D005352 2.6e-44 184.9 193 50.8
TWI36G0648 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 1.3e-43 182.6 99 80.8
Psat3g154560 Pisum sativum HOM05D001399 ORTHO05D001670 8.4e-35 153.3 84 90.5
PSO724G1248 Papaver somniferum HOM05D004097 ORTHO05D005352 5.1e-32 144.1 198 40.4
CAN.G49.23 Capsicum annuum HOM05D004097 ORTHO05D005352 1.4e-29 136.0 94 66.0
CAN.G49.22 Capsicum annuum HOM05D004097 ORTHO05D043419 1.6e-22 112.5 94 57.4
Cpa.g.sc43.15 Carica papaya HOM05D004097 ORTHO05D043419 2.4e-21 108.6 69 71.0
Psat7g044200 Pisum sativum HOM05D003089 ORTHO05D003544 2.0e-20 105.5 59 91.5
Solyc05g015250.2 Solanum lycopersicum HOM05D004097 ORTHO05D036916 5.9e-20 104.0 122 45.1
TPR.G36369 Trifolium pratense HOM05D004097 ORTHO05D001670 7.6e-20 103.6 69 82.6
Actinidia15018 Actinidia chinensis HOM05D004097 ORTHO05D054282 1.1e-18 99.8 81 55.6
Actinidia15017 Actinidia chinensis HOM05D004097 ORTHO05D055553 1.6e-17 95.9 95 52.6
Actinidia15016 Actinidia chinensis HOM05D004097 ORTHO05D005352 3.0e-16 91.7 61 68.9
Peaxi162Scf00128g01139 Petunia axillaris HOM05D004097 ORTHO05D036916 1.3e-14 86.3 77 55.8
Sabra10G0046700 Salix brachista HOM05D004097 ORTHO05D005352 1.8e-13 82.4 45 80.0
TAR624G1259 Trochodendron aralioides HOM05D000428 ORTHO05D009311 4.5e-12 77.8 36 88.9
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 1.3e-11 76.3 98 41.8
TAR626G1714 Trochodendron aralioides HOM05D000428 ORTHO05D009311 1.3e-11 76.3 35 91.4
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 1.7e-11 75.9 96 42.7
MBI03_g17125_MAGBIO Magnolia biondii HOM05D000089 ORTHO05D000104 5.0e-11 74.3 44 72.7


User provided reference genes

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