Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_17781_v3 Cicer arietinum L. HOM05D004854 ORTHO05D005854 5.6e-33 144.4 122 100.0
Psat7g058720 Pisum sativum HOM05D004854 ORTHO05D005854 1.5e-30 136.3 75 94.7
Medtr8g089790 Medicago truncatula HOM05D004854 ORTHO05D005854 2.2e-29 132.5 75 90.7
Glyma.05G174300 Glycine max HOM05D004854 ORTHO05D005854 2.1e-27 125.9 75 85.3
Glyma.08G131500 Glycine max HOM05D004854 ORTHO05D005854 2.1e-27 125.9 75 85.3
Phvul.002G259300 Phaseolus vulgaris HOM05D004854 ORTHO05D005854 2.5e-25 119.0 74 77.0
TPR.G6298 Trifolium pratense HOM05D004854 ORTHO05D005854 9.6e-25 117.1 68 88.2
VMungo0251G0447 Vigna mungo HOM05D004854 ORTHO05D005854 1.4e-23 113.2 72 75.0
arahy.Tifrunner.gnm1.ann1.P39ID1 Arachis hypogaea HOM05D004854 ORTHO05D005854 1.2e-22 110.2 74 75.7
Lj4g0022898 Lotus japonicus HOM05D004854 ORTHO05D005854 1.5e-22 109.8 70 78.6
Prupe.1G079500 Prunus persica HOM05D004854 ORTHO05D005854 1.5e-22 109.8 70 75.7
arahy.Tifrunner.gnm1.ann1.9B8HPN Arachis hypogaea HOM05D004854 ORTHO05D005854 3.4e-22 108.6 70 78.6
arahy.Tifrunner.gnm1.ann1.P9UE85 Arachis hypogaea HOM05D004854 ORTHO05D005854 3.4e-22 108.6 70 78.6
Cpa.g.sc95.32 Carica papaya HOM05D004854 ORTHO05D005854 3.4e-22 108.6 73 72.6
Lalb_Chr13g0295841 Lupinus albus HOM05D004854 ORTHO05D005854 5.8e-22 107.8 70 80.0
Lalb_Chr07g0185421 Lupinus albus HOM05D004854 ORTHO05D005854 1.3e-21 106.7 69 79.7
Sc26g0002890 Simmondsia chinensis HOM05D004854 ORTHO05D005854 1.7e-21 106.3 122 67.2
arahy.Tifrunner.gnm1.ann1.90PU0B Arachis hypogaea HOM05D004854 ORTHO05D005854 6.4e-21 104.4 72 72.2
unitig_899.g15189 Utricularia gibba HOM05D004854 ORTHO05D005854 8.4e-21 104.0 122 80.3
Atru.chr12.1305 Acer truncatum HOM05D004854 ORTHO05D005854 1.1e-20 103.6 71 71.8
Migut.J00819 Erythranthe guttata HOM05D004854 ORTHO05D005854 1.1e-20 103.6 73 69.9
SGA_v2.0_scaffold21G09635 Striga asiatica HOM05D004854 ORTHO05D005854 1.4e-20 103.2 71 73.2
MSTRG.26532 Avicennia marina HOM05D004854 ORTHO05D005854 1.9e-20 102.8 72 69.4
MBI13_g31550_MAGBIO Magnolia biondii HOM05D004854 ORTHO05D005854 1.9e-20 102.8 68 76.5
MD16G1253100 Malus domestica HOM05D004854 ORTHO05D005854 1.9e-20 102.8 122 79.5
vmacro20836 Vaccinium macrocarpon HOM05D004854 ORTHO05D005854 1.9e-20 102.8 69 76.8
arahy.Tifrunner.gnm1.ann1.AP25S4 Arachis hypogaea HOM05D004854 ORTHO05D005854 2.4e-20 102.4 69 73.9
CANSAT11G1984 Cannabis sativa HOM05D004854 ORTHO05D005854 2.4e-20 102.4 69 73.9
ClCG11G011930 Citrullus lanatus HOM05D004854 ORTHO05D005854 3.2e-20 102.1 70 72.9
Ciclev10002863m.g Citrus clementina HOM05D004854 ORTHO05D005854 4.2e-20 101.7 74 70.3
MELO3C003999.2 Cucumis melo HOM05D004854 ORTHO05D005854 4.2e-20 101.7 70 72.9
Thhalv10026301m.g Eutrema salsugineum HOM05D004854 ORTHO05D005854 4.2e-20 101.7 72 70.8
AL8G33260 Arabidopsis lyrata HOM05D004854 ORTHO05D005854 5.4e-20 101.3 70 70.0
BcaB05g22334 Brassica carinata HOM05D004854 ORTHO05D005854 5.4e-20 101.3 70 70.0
BcaC03g14166 Brassica carinata HOM05D004854 ORTHO05D005854 5.4e-20 101.3 70 70.0
BcaC04g19981 Brassica carinata HOM05D004854 ORTHO05D005854 5.4e-20 101.3 70 70.0
MD13G1245200 Malus domestica HOM05D004854 ORTHO05D005854 5.4e-20 101.3 70 70.0
arahy.Tifrunner.gnm1.ann1.XNR1AK Arachis hypogaea HOM05D004854 ORTHO05D005854 9.3e-20 100.5 69 72.5
CsaV3_2G008580 Cucumis sativus L. HOM05D004854 ORTHO05D005854 9.3e-20 100.5 69 73.9
Actinidia29956 Actinidia chinensis HOM05D004854 ORTHO05D005854 1.2e-19 100.1 71 69.0
AL7G27120 Arabidopsis lyrata HOM05D004854 ORTHO05D005854 1.2e-19 100.1 70 71.4
CDE05G0266 Ceratophyllum demersum HOM05D000177 ORTHO05D008165 1.2e-19 100.1 67 74.6
CDE05G2165 Ceratophyllum demersum HOM05D004854 ORTHO05D005854 1.2e-19 100.1 67 74.6
Lj6g0003516 Lotus japonicus HOM05D004854 ORTHO05D005854 1.2e-19 100.1 70 72.9
MSTRG.19386 Avicennia marina HOM05D004854 ORTHO05D005854 1.6e-19 99.8 75 69.3
BraA02t05931Z Brassica rapa HOM05D004854 ORTHO05D005854 1.6e-19 99.8 70 68.6
CARHR233360 Cardamine hirsuta HOM05D004854 ORTHO05D005854 1.6e-19 99.8 72 70.8
Rhsim01G0120500 Rhododendron simsii HOM05D004854 ORTHO05D005854 1.6e-19 99.8 67 76.1
SEGI_03932 Sequoiadendron giganteum HOM05D004854 ORTHO05D005854 1.6e-19 99.8 71 66.2
Dinv26446 Davidia involucrata HOM05D004854 ORTHO05D005854 2.1e-19 99.4 68 73.5
Oeu000974.1 Olea europaea HOM05D004854 ORTHO05D005854 2.1e-19 99.4 72 70.8
Potri.009G032600 Populus trichocarpa HOM05D004854 ORTHO05D005854 2.1e-19 99.4 71 74.6
Sp7g23910 Schrenkiella parvula HOM05D004854 ORTHO05D005854 2.1e-19 99.4 70 71.4
CSS0022850 Camellia sinensis var. sinensis HOM05D004854 ORTHO05D005854 2.7e-19 99.0 67 76.1
Eucgr.C02261 Eucalyptus grandis HOM05D004854 ORTHO05D005854 2.7e-19 99.0 67 74.6
Eucgr.C02263 Eucalyptus grandis HOM05D004854 ORTHO05D005854 2.7e-19 99.0 67 74.6
PGR044G2628 Punica granatum HOM05D004854 ORTHO05D005854 2.7e-19 99.0 68 73.5
PGR109G0004 Punica granatum HOM05D004854 ORTHO05D005854 2.7e-19 99.0 68 73.5
PGR142G3975 Punica granatum HOM05D004854 ORTHO05D005854 2.7e-19 99.0 75 66.7
A02p08620 Brassica napus HOM05D004854 ORTHO05D005854 3.5e-19 98.6 69 69.6
Dinv25401 Davidia involucrata HOM05D004854 ORTHO05D005854 4.6e-19 98.2 69 72.5
QL11p004841 Quercus lobata HOM05D004854 ORTHO05D005854 4.6e-19 98.2 70 71.4
Sp6g19020 Schrenkiella parvula HOM05D004854 ORTHO05D005854 4.6e-19 98.2 70 68.6
THA.LOC104813509 Tarenaya hassleriana HOM05D004854 ORTHO05D005854 4.6e-19 98.2 70 68.6
Actinidia39348 Actinidia chinensis HOM05D000406 ORTHO05D003425 6.0e-19 97.8 67 74.6
Peaxi162Scf00324g00719 Petunia axillaris HOM05D004854 ORTHO05D005854 6.0e-19 97.8 68 73.5
Sed0005886 Sechium edule HOM05D004854 ORTHO05D005854 6.0e-19 97.8 70 70.0
AT4G25890 Arabidopsis thaliana HOM05D004854 ORTHO05D005854 7.9e-19 97.4 70 68.6
Sed0001835 Sechium edule HOM05D004854 ORTHO05D005854 7.9e-19 97.4 70 70.0
CAN.G86.2 Capsicum annuum HOM05D004854 ORTHO05D005854 1.0e-18 97.1 68 70.6
FAN22G0664 Fragaria x ananassa HOM05D004854 ORTHO05D005854 1.0e-18 97.1 69 66.7
Nitab4.5_0000074g0010 Nicotiana tabacum HOM05D004854 ORTHO05D005854 1.0e-18 97.1 68 72.1
Nitab4.5_0012849g0010 Nicotiana tabacum HOM05D004854 ORTHO05D005854 1.0e-18 97.1 68 72.1
Solyc07g009330.4 Solanum lycopersicum HOM05D004854 ORTHO05D005854 1.0e-18 97.1 68 73.5
PGSC0003DMG400008513 Solanum tuberosum HOM05D004854 ORTHO05D005854 1.0e-18 97.1 68 73.5
Cc06_g22110 Coffea canephora HOM05D004854 ORTHO05D005854 1.3e-18 96.7 68 72.1
Eucgr.A01410 Eucalyptus grandis HOM05D004854 ORTHO05D005854 1.3e-18 96.7 67 73.1
FvH4_4g07630 Fragaria vesca HOM05D004854 ORTHO05D005854 1.3e-18 96.7 67 68.7
FAN07G2001 Fragaria x ananassa HOM05D004854 ORTHO05D005854 1.3e-18 96.7 67 68.7
FAN12G2445 Fragaria x ananassa HOM05D004854 ORTHO05D005854 1.3e-18 96.7 67 68.7
FAN17G2475 Fragaria x ananassa HOM05D004854 ORTHO05D005854 1.3e-18 96.7 67 68.7
Carub.0007s1506 Capsella rubella HOM05D004854 ORTHO05D005854 1.7e-18 96.3 72 68.1
Duzib150G0904 Durio zibethinus HOM05D004854 ORTHO05D005854 1.7e-18 96.3 68 70.6
Gohir.A05G003400 Gossypium hirsutum HOM05D004854 ORTHO05D005854 1.7e-18 96.3 69 69.6
Gohir.D05G003800 Gossypium hirsutum HOM05D004854 ORTHO05D005854 1.7e-18 96.3 69 69.6
Gorai.009G003400 Gossypium raimondii HOM05D004854 ORTHO05D005854 1.7e-18 96.3 69 69.6
SGA_v2.0_scaffold41G15867 Striga asiatica HOM05D004854 ORTHO05D005854 1.7e-18 96.3 70 67.1
THA.LOC104811780 Tarenaya hassleriana HOM05D004854 ORTHO05D005854 1.7e-18 96.3 70 67.1
TWI38G2070 Tripterygium wilfordii HOM05D004854 ORTHO05D005854 1.7e-18 96.3 70 67.1
Oeu044701.1 Olea europaea HOM05D004854 ORTHO05D005854 2.3e-18 95.9 122 77.9
C02p14390 Brassica napus HOM05D004854 ORTHO05D005854 3.0e-18 95.5 68 67.6
BolC2t07563H Brassica oleracea HOM05D004854 ORTHO05D005854 3.0e-18 95.5 68 67.6
BolC9t57762H Brassica oleracea HOM05D004854 ORTHO05D005854 3.0e-18 95.5 68 67.6
BraA10t43555Z Brassica rapa HOM05D004854 ORTHO05D005854 3.0e-18 95.5 68 67.6
Carub.0008s1780 Capsella rubella HOM05D004854 ORTHO05D005854 3.0e-18 95.5 70 65.7
CiPaw.08G034100 Carya illinoinensis HOM05D004854 ORTHO05D005854 3.0e-18 95.5 70 67.1
RcHm_v2.0_Chr4g0400241 Rosa chinensis HOM05D004854 ORTHO05D005854 3.0e-18 95.5 67 68.7
Sopen07g005080 Solanum pennellii HOM05D004854 ORTHO05D005854 3.0e-18 95.5 68 72.1
TWI38G1790 Tripterygium wilfordii HOM05D004854 ORTHO05D005854 3.0e-18 95.5 72 63.9
Sabra09G0023200 Salix brachista HOM05D004854 ORTHO05D005854 3.9e-18 95.1 68 76.5
BcaB08g36089 Brassica carinata HOM05D004854 ORTHO05D005854 5.1e-18 94.7 71 66.2
ECA247G3496 Erigeron canadensis HOM05D004854 ORTHO05D005854 5.1e-18 94.7 70 67.1
Thhalv10015037m.g Eutrema salsugineum HOM05D004854 ORTHO05D005854 5.1e-18 94.7 70 65.7
HanXRQChr10g0297881 Helianthus annuus HOM05D004854 ORTHO05D005854 5.1e-18 94.7 70 67.1
Potri.003G010200 Populus trichocarpa HOM05D004854 ORTHO05D005854 5.1e-18 94.7 71 70.4
Zm00001eb226990 Zea mays HOM05D004854 ORTHO05D005854 5.1e-18 94.7 70 68.6
TWI18G0069 Tripterygium wilfordii HOM05D004854 ORTHO05D005854 6.6e-18 94.4 69 68.1
TAR625G0051 Trochodendron aralioides HOM05D004854 ORTHO05D005854 6.6e-18 94.4 67 71.6
PSO423G0276 Papaver somniferum HOM05D004854 ORTHO05D005854 8.7e-18 94.0 72 62.5
DCAR_003035 Daucus carota HOM05D004854 ORTHO05D005854 1.1e-17 93.6 71 67.6
A10p14720 Brassica napus HOM05D004854 ORTHO05D005854 1.5e-17 93.2 68 66.2
C09p49130 Brassica napus HOM05D004854 ORTHO05D005854 1.5e-17 93.2 68 66.2
Oeu064534.1 Olea europaea HOM05D004854 ORTHO05D005854 1.5e-17 93.2 122 73.8
Ah.05g168230 Amaranthus hybridus HOM05D004854 ORTHO05D005854 1.9e-17 92.8 70 68.6
Os06g0701400 Oryza sativa ssp. japonica HOM05D004854 ORTHO05D005854 1.9e-17 92.8 70 65.7
ATR0626G247 Amborella trichopoda HOM05D004854 ORTHO05D005854 3.3e-17 92.0 62 74.2
Os01g0231700 Oryza sativa ssp. japonica HOM05D004854 ORTHO05D005854 3.3e-17 92.0 70 64.3
Aa31LG3G13170 Aethionema arabicum HOM05D004854 ORTHO05D005854 4.3e-17 91.7 70 62.9
AT5G57290 Arabidopsis thaliana HOM05D004854 ORTHO05D005854 4.3e-17 91.7 65 67.7
CARHR271090 Cardamine hirsuta HOM05D004854 ORTHO05D005854 4.3e-17 91.7 70 64.3
RcHm_v2.0_Chr1g0341131 Rosa chinensis HOM05D004854 ORTHO05D005854 4.3e-17 91.7 67 65.7
Cfa013427 Carpinus fangiana HOM05D004854 ORTHO05D005854 5.6e-17 91.3 67 67.2
Ah.16g108570 Amaranthus hybridus HOM05D004854 ORTHO05D005854 7.3e-17 90.9 70 67.1
Dinv25400 Davidia involucrata HOM05D004854 ORTHO05D005854 7.3e-17 90.9 66 69.7
Oeu044703.1 Olea europaea HOM05D004854 ORTHO05D005854 7.3e-17 90.9 68 67.6
AUR62026626 Chenopodium quinoa HOM05D004854 ORTHO05D005854 9.6e-17 90.5 70 65.7
AUR62034880 Chenopodium quinoa HOM05D004854 ORTHO05D005854 9.6e-17 90.5 70 65.7
Manes.06G021300 Manihot esculenta HOM05D004854 ORTHO05D005854 9.6e-17 90.5 69 68.1
PSO596G0050 Papaver somniferum HOM05D004854 ORTHO05D005854 9.6e-17 90.5 72 58.3
Thecc.09G180300 Theobroma cacao HOM05D004854 ORTHO05D005854 9.6e-17 90.5 69 66.7
GSVIVG01010910001 Vitis vinifera HOM05D004854 ORTHO05D005854 9.6e-17 90.5 67 65.7
Hund26676 Selenicereus undatus HOM05D004854 ORTHO05D005854 1.3e-16 90.1 71 59.2
Lsat_1_v5_gn_9_31040 Lactuca sativa HOM05D004854 ORTHO05D005854 1.6e-16 89.7 122 74.6
PSO596G0067 Papaver somniferum HOM05D004854 ORTHO05D005854 1.6e-16 89.7 75 61.3
Sabra03G0005200 Salix brachista HOM05D004854 ORTHO05D005854 1.6e-16 89.7 70 67.1
SalBow5G3614 Salvia bowleyana HOM05D004854 ORTHO05D005854 2.1e-16 89.4 70 67.1
PSO423G0052 Papaver somniferum HOM05D004854 ORTHO05D005854 8.1e-16 87.4 75 60.0
SGA_v2.0_scaffold46G17340 Striga asiatica HOM05D004854 ORTHO05D005854 1.1e-15 87.0 74 63.5
Zm00001eb272850 Zea mays HOM05D004854 ORTHO05D005854 1.4e-15 86.7 69 65.2
SHI02877 Sapria himalayana HOM05D004681 ORTHO05D005541 2.4e-15 85.9 66 66.7
TAR636G3485 Trochodendron aralioides HOM05D004854 ORTHO05D005854 2.4e-15 85.9 60 71.7
Migut.L01900 Erythranthe guttata HOM05D004854 ORTHO05D005854 4.0e-15 85.1 61 67.2
HPP92_026146 Vanilla planifolia HOM05D003573 ORTHO05D004204 4.0e-15 85.1 67 64.2
Thecc.01G294400 Theobroma cacao HOM05D004854 ORTHO05D005854 1.2e-14 83.6 71 59.2
Pp3c22_2920 Physcomitrium patens HOM05D004854 ORTHO05D005854 5.8e-14 81.3 72 61.1
arahy.Tifrunner.gnm1.ann1.63P7R9 Arachis hypogaea HOM05D000970 ORTHO05D000788 2.2e-13 79.3 53 77.4
Pp3c21_16160 Physcomitrium patens HOM05D004854 ORTHO05D005854 1.1e-12 77.0 72 54.2
Mapoly0006s0174 Marchantia polymorpha HOM05D004854 ORTHO05D005854 5.4e-12 74.7 124 66.9
C03p15060 Brassica napus HOM05D004854 ORTHO05D005854 7.1e-12 74.3 56 66.1
Nn2g12744 Nelumbo nucifera HOM05D004854 ORTHO05D005854 2.3e-10 69.3 46 71.7
SMO172G0233 Selaginella moellendorffii HOM05D004854 ORTHO05D005854 1.5e-09 66.6 70 48.6
BolC3t13948H Brassica oleracea HOM05D004854 ORTHO05D005854 3.3e-09 65.5 54 59.3
Duzib170G0267 Durio zibethinus HOM05D004854 ORTHO05D005854 1.4e-07 60.1 42 66.7
COL.COLO4_25466 Corchorus olitorius HOM05D004854 ORTHO05D005854 9.0e-07 57.4 42 59.5
Duzib168G1583 Durio zibethinus HOM05D004854 ORTHO05D005854 2.0e-06 56.2 46 56.5


User provided reference genes

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