Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_17699_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 2.8e-302 1041.2 535 100.0
TPR.G2194 Trifolium pratense HOM05D004947 ORTHO05D006077 1.4e-224 783.1 543 75.7
Lj1g0026570 Lotus japonicus HOM05D004947 ORTHO05D006077 4.4e-175 618.6 497 65.0
Lalb_Chr11g0068011 Lupinus albus HOM05D004947 ORTHO05D006077 2.2e-174 616.3 536 63.8
arahy.Tifrunner.gnm1.ann1.XRAY4T Arachis hypogaea HOM05D004947 ORTHO05D006077 1.6e-172 610.1 509 64.2
arahy.Tifrunner.gnm1.ann1.V2ZAQJ Arachis hypogaea HOM05D004947 ORTHO05D006077 3.5e-172 609.0 506 65.0
Psat7g052040 Pisum sativum HOM05D004947 ORTHO05D006077 4.6e-172 608.6 388 79.9
Glyma.06G145800 Glycine max HOM05D004947 ORTHO05D006077 1.2e-167 594.0 544 60.3
Ca_16888_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 1.1e-162 577.4 507 61.9
Medtr3g094760 Medicago truncatula HOM05D004947 ORTHO05D006077 3.1e-160 569.3 505 61.2
TPR.G6951 Trifolium pratense HOM05D004947 ORTHO05D006077 2.6e-159 566.2 524 59.2
Phvul.009G140300 Phaseolus vulgaris HOM05D004947 ORTHO05D006077 7.4e-154 548.1 567 55.0
QL06p032353 Quercus lobata HOM05D004947 ORTHO05D006077 9.0e-144 514.6 464 58.6
Cfa002745 Carpinus fangiana HOM05D004947 ORTHO05D006077 1.3e-142 510.8 487 57.7
Thecc.01G111600 Theobroma cacao HOM05D004947 ORTHO05D006077 6.1e-140 501.9 483 56.7
Duzib147G0355 Durio zibethinus HOM05D004947 ORTHO05D006077 8.8e-139 498.0 466 57.5
TAR625G0980 Trochodendron aralioides HOM05D004947 ORTHO05D006077 8.8e-139 498.0 533 54.0
Psat5g067160 Pisum sativum HOM05D004947 ORTHO05D006077 1.5e-138 497.3 457 58.6
TAR376G0315 Trochodendron aralioides HOM05D004947 ORTHO05D006077 8.2e-137 491.5 497 53.5
Dinv42703 Davidia involucrata HOM05D004947 ORTHO05D006077 3.2e-133 479.6 474 57.2
CiPaw.03G134900 Carya illinoinensis HOM05D004947 ORTHO05D006077 4.7e-132 475.7 434 58.8
Gohir.A02G134000 Gossypium hirsutum HOM05D004947 ORTHO05D006077 2.3e-131 473.4 467 56.1
Gohir.D03G045400 Gossypium hirsutum HOM05D004947 ORTHO05D006077 6.7e-131 471.9 467 55.5
CiPaw.04G092600 Carya illinoinensis HOM05D004947 ORTHO05D006077 8.8e-131 471.5 414 59.9
Prupe.6G175000 Prunus persica HOM05D004947 ORTHO05D006077 1.5e-130 470.7 520 51.5
MBI03_g11138_MAGBIO Magnolia biondii HOM05D004947 ORTHO05D006077 2.0e-130 470.3 459 55.8
COL.COLO4_11020 Corchorus olitorius HOM05D004947 ORTHO05D006077 2.6e-130 469.9 467 55.0
Gorai.003G046500 Gossypium raimondii HOM05D004947 ORTHO05D006077 5.7e-130 468.8 467 55.5
Ciclev10025244m.g Citrus clementina HOM05D004947 ORTHO05D006077 9.7e-130 468.0 479 53.9
Sc03g0004250 Simmondsia chinensis HOM05D004947 ORTHO05D006077 1.3e-129 467.6 476 53.8
Nitab4.5_0002843g0020 Nicotiana tabacum HOM05D004947 ORTHO05D006077 4.8e-129 465.7 487 54.0
CsaV3_6G045960 Cucumis sativus L. HOM05D004947 ORTHO05D006077 6.9e-128 461.8 484 54.3
Atru.chr4.372 Acer truncatum HOM05D004947 ORTHO05D006077 1.7e-126 457.2 478 53.6
Atru.chr4.373 Acer truncatum HOM05D004947 ORTHO05D006077 1.7e-126 457.2 478 53.6
Manes.12G141400 Manihot esculenta HOM05D004947 ORTHO05D006077 5.0e-126 455.7 496 52.4
Potri.005G083600 Populus trichocarpa HOM05D004947 ORTHO05D006077 5.0e-126 455.7 496 52.8
Peaxi162Scf01006g00315 Petunia axillaris HOM05D004947 ORTHO05D006077 6.5e-126 455.3 485 54.2
ClCG01G019270 Citrullus lanatus HOM05D004947 ORTHO05D006077 5.5e-125 452.2 530 50.0
CAN.G1854.1 Capsicum annuum HOM05D004947 ORTHO05D006077 1.0e-123 448.0 485 52.0
Nitab4.5_0000156g0160 Nicotiana tabacum HOM05D004947 ORTHO05D006077 5.2e-123 445.7 499 51.5
TWI74G1183 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 5.2e-123 445.7 477 53.7
Sopen04g023630 Solanum pennellii HOM05D004947 ORTHO05D006077 7.4e-122 441.8 485 51.3
CANSAT01G0537 Cannabis sativa HOM05D004947 ORTHO05D006077 1.7e-121 440.7 537 47.3
PGSC0003DMG402012957 Solanum tuberosum HOM05D004947 ORTHO05D006077 2.2e-121 440.3 485 51.8
PGR102G0173 Punica granatum HOM05D004947 ORTHO05D006077 3.1e-120 436.4 541 48.2
Oeu056486.1 Olea europaea HOM05D004947 ORTHO05D006077 2.0e-119 433.7 465 53.5
Solyc04g054170.4 Solanum lycopersicum HOM05D004947 ORTHO05D006077 2.9e-118 429.9 515 48.2
Sabra07G0068900 Salix brachista HOM05D004947 ORTHO05D006077 3.8e-118 429.5 514 49.8
RcHm_v2.0_Chr2g0116221 Rosa chinensis HOM05D004947 ORTHO05D006077 6.5e-118 428.7 491 49.5
Migut.L00078 Erythranthe guttata HOM05D004947 ORTHO05D006077 3.2e-117 426.4 460 51.7
Manes.13G077600 Manihot esculenta HOM05D004947 ORTHO05D006077 4.2e-117 426.0 416 56.0
Cc07_g16050 Coffea canephora HOM05D004947 ORTHO05D006077 5.5e-117 425.6 469 49.7
Nn1g00054 Nelumbo nucifera HOM05D004947 ORTHO05D006077 2.1e-116 423.7 422 54.7
Eucgr.H04830 Eucalyptus grandis HOM05D004947 ORTHO05D006077 1.8e-115 420.6 412 54.4
Sed0009808 Sechium edule HOM05D004947 ORTHO05D006077 1.8e-115 420.6 427 55.5
vmacro12909 Vaccinium macrocarpon HOM05D004947 ORTHO05D006077 4.0e-115 419.5 547 45.7
DCAR_014256 Daucus carota HOM05D004947 ORTHO05D006077 6.7e-115 418.7 491 47.5
PSO675G5310 Papaver somniferum HOM05D004947 ORTHO05D006077 3.3e-114 416.4 533 45.6
AUR62003314 Chenopodium quinoa HOM05D004947 ORTHO05D006077 2.2e-113 413.7 487 49.1
HanXRQChr15g0471901 Helianthus annuus HOM05D004947 ORTHO05D006077 2.2e-113 413.7 486 48.8
MD01G1017700 Malus domestica HOM05D004947 ORTHO05D006077 2.2e-113 413.7 515 47.4
HanXRQChr14g0446211 Helianthus annuus HOM05D004947 ORTHO05D006077 6.3e-113 412.1 476 47.7
Lj4A878G34 Lonicera japonica HOM05D004947 ORTHO05D006077 6.3e-113 412.1 428 52.8
SGA_v2.0_scaffold47G17714 Striga asiatica HOM05D004947 ORTHO05D006077 1.4e-112 411.0 491 48.3
Aqoxy5G01985_Aqoxy5G01986 Aquilegia oxysepala HOM05D004947 ORTHO05D006077 4.1e-112 409.5 481 48.6
PSO541G1244 Papaver somniferum HOM05D004947 ORTHO05D006077 4.1e-112 409.5 534 45.7
Haze_25032 Corylus avellana HOM05D004947 ORTHO05D006077 1.7e-110 404.1 486 49.8
TWI53G2111 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 3.8e-110 402.9 515 47.8
EL10Ac6g14744 Beta vulgaris HOM05D004947 ORTHO05D006077 2.5e-109 400.2 537 44.9
CDE05G2725 Ceratophyllum demersum HOM05D004947 ORTHO05D006077 2.1e-108 397.1 484 48.3
Actinidia16961 Actinidia chinensis HOM05D004947 ORTHO05D006077 2.7e-108 396.7 477 50.9
Lsat_1_v5_gn_2_65461 Lactuca sativa HOM05D004947 ORTHO05D006077 3.6e-108 396.4 524 44.8
Rhsim10G0151500 Rhododendron simsii HOM05D004947 ORTHO05D006077 2.3e-107 393.7 479 47.2
FAN28G2993 Fragaria x ananassa HOM05D004947 ORTHO05D006077 3.0e-107 393.3 507 45.0
FAN23G3004 Fragaria x ananassa HOM05D004947 ORTHO05D006077 5.2e-107 392.5 535 45.2
Ah.02g124420 Amaranthus hybridus HOM05D004947 ORTHO05D006077 1.5e-106 391.0 518 44.8
SalBow5G4162 Salvia bowleyana HOM05D004947 ORTHO05D006077 2.6e-106 390.2 567 43.2
THA.LOC104818481 Tarenaya hassleriana HOM05D004947 ORTHO05D006077 7.5e-106 388.7 459 47.7
Hund19664 Selenicereus undatus HOM05D004947 ORTHO05D006077 5.4e-104 382.5 502 46.8
ECA238G1011 Erigeron canadensis HOM05D004947 ORTHO05D006077 1.5e-101 374.4 493 44.6
SHI11672 Sapria himalayana HOM05D004947 ORTHO05D006077 1.9e-101 374.0 481 46.4
MELO3C007803.2 Cucumis melo HOM05D004947 ORTHO05D006077 4.7e-100 369.4 484 47.9
HPP92_005876 Vanilla planifolia HOM05D004947 ORTHO05D006077 1.0e-99 368.2 471 43.9
unitig_88.g27735 Utricularia gibba HOM05D004947 ORTHO05D006077 1.7e-97 360.9 568 42.1
MELO3C007802.2 Cucumis melo HOM05D004947 ORTHO05D006077 2.2e-97 360.5 483 45.8
FvH4_1g24620 Fragaria vesca HOM05D004947 ORTHO05D006077 8.3e-97 358.6 538 42.2
FAN26G0674 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.1e-93 348.2 538 41.6
ATR0171G039 Amborella trichopoda HOM05D004947 ORTHO05D006077 1.5e-93 347.8 459 43.8
Aa31LG1G17040 Aethionema arabicum HOM05D004947 ORTHO05D006077 1.0e-91 341.7 532 38.2
FAN19G2885 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.4e-91 341.3 536 40.9
Zm00001eb364640 Zea mays HOM05D004947 ORTHO05D006077 2.0e-90 337.4 456 41.0
Sp2g28010 Schrenkiella parvula HOM05D004947 ORTHO05D006077 6.4e-89 332.4 530 38.5
AUR62016269 Chenopodium quinoa HOM05D004947 ORTHO05D006077 5.4e-88 329.3 408 49.5
Os02g0770100 Oryza sativa ssp. japonica HOM05D004947 ORTHO05D006077 2.0e-87 327.4 479 39.2
GSVIVG01022215001 Vitis vinifera HOM05D004947 ORTHO05D006077 2.0e-87 327.4 369 51.5
BcaB02g09842 Brassica carinata HOM05D004947 ORTHO05D006077 3.3e-85 320.1 456 38.8
BcaC01g02724 Brassica carinata HOM05D004947 ORTHO05D006077 6.2e-84 315.8 456 38.4
C03p61260 Brassica napus HOM05D004947 ORTHO05D006077 6.2e-84 315.8 456 38.4
BraA06t26105Z Brassica rapa HOM05D004947 ORTHO05D006077 1.8e-83 314.3 458 38.4
BolC3t18387H Brassica oleracea HOM05D004947 ORTHO05D006077 2.3e-83 313.9 457 38.5
A06p31700 Brassica napus HOM05D004947 ORTHO05D006077 3.1e-83 313.5 456 38.4
VMungo1309G1623 Vigna mungo HOM05D004947 ORTHO05D006077 6.0e-79 299.3 370 50.5
CARHR293840 Cardamine hirsuta HOM05D004947 ORTHO05D006077 7.8e-79 298.9 474 36.5
AL8G42430 Arabidopsis lyrata HOM05D004947 ORTHO05D006077 1.9e-77 294.3 455 37.1
Thhalv10003912m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 3.6e-76 290.0 489 36.6
AT5G64930 Arabidopsis thaliana HOM05D004947 ORTHO05D006077 8.9e-75 285.4 458 36.7
BcaB04g20000 Brassica carinata HOM05D004947 ORTHO05D006077 9.9e-74 282.0 488 37.3
SalBow5G3891 Salvia bowleyana HOM05D004947 ORTHO05D006077 2.2e-73 280.8 232 58.2
Carub.0008s2576 Capsella rubella HOM05D004947 ORTHO05D006077 8.3e-73 278.9 480 35.0
QL93p0275_0011 Quercus lobata HOM05D004947 ORTHO05D006077 9.2e-72 275.4 295 53.2
Sabra05G0068700 Salix brachista HOM05D004947 ORTHO05D006077 6.4e-65 252.7 328 48.8
Potri.007G082100 Populus trichocarpa HOM05D004947 ORTHO05D006077 3.3e-61 240.4 296 50.7
Thhalv10019768m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 1.1e-59 235.3 521 32.8
CSS0010100 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 9.9e-58 228.8 364 42.6
FAN23G2837 Fragaria x ananassa HOM05D004947 ORTHO05D006077 4.6e-55 219.9 362 42.0
Nn1g05196 Nelumbo nucifera HOM05D004947 ORTHO05D006077 1.3e-54 218.4 218 53.2
VMungo1309G0633 Vigna mungo HOM05D004947 ORTHO05D006077 1.5e-53 214.9 146 69.9
CSS0029975 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 1.9e-53 214.5 302 45.7
Cpa.g.sc196.3 Carica papaya HOM05D004947 ORTHO05D006077 5.3e-51 206.5 165 58.8
FvH4_1g22140 Fragaria vesca HOM05D004947 ORTHO05D006077 1.9e-48 198.0 317 40.7
Thhalv10005311m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 9.3e-48 195.7 238 42.0
SEGI_09258 Sequoiadendron giganteum HOM05D004947 ORTHO05D006077 6.4e-41 172.9 240 38.8
Zm00001eb193490 Zea mays HOM05D004947 ORTHO05D006077 2.1e-39 167.9 345 35.1
Pp3c21_530 Physcomitrium patens HOM05D004947 ORTHO05D006077 1.3e-36 158.7 227 37.4
Mapoly0483s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 4.0e-35 153.7 279 33.7
AagrBONN_evm.TU.Sc2ySwM_228.3588 Anthoceros agrestis HOM05D004947 ORTHO05D006077 9.0e-35 152.5 318 32.4
Mapoly0107s0002 Marchantia polymorpha HOM05D004947 ORTHO05D006077 7.6e-34 149.4 350 29.7
Pp3c22_5670 Physcomitrium patens HOM05D004947 ORTHO05D006077 9.7e-29 132.5 214 36.0
Mapoly0002s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 4.8e-28 130.2 269 32.0
SGA_v2.0_scaffold47G17717 Striga asiatica HOM05D004947 ORTHO05D006077 2.6e-26 124.4 132 49.2
CSS0006585 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 7.7e-26 122.9 94 57.4
CSS0047108 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 7.7e-26 122.9 94 57.4
FAN28G0567 Fragaria x ananassa HOM05D004947 ORTHO05D006077 7.2e-24 116.3 216 37.0
Nn1g00055 Nelumbo nucifera HOM05D004947 ORTHO05D006077 1.1e-21 109.0 151 45.7
CBR_g4593 Chara braunii HOM05D004947 ORTHO05D006077 7.4e-21 106.3 318 25.5
Nn5g28924 Nelumbo nucifera HOM05D004947 ORTHO05D006077 1.1e-19 102.4 147 45.6
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 1.5e-18 98.6 58 74.1
BcaB02g07604 Brassica carinata HOM05D004947 ORTHO05D006077 2.9e-17 94.4 272 27.9
CBR_g49522 Chara braunii HOM05D000019 ORTHO05D000048 2.7e-15 87.8 430 22.3
BcaC08g44843 Brassica carinata HOM05D004947 ORTHO05D006077 1.4e-14 85.5 254 25.2
C06p24500 Brassica napus HOM05D004947 ORTHO05D006077 1.4e-14 85.5 254 25.2
BolC6t37597H Brassica oleracea HOM05D004947 ORTHO05D006077 1.4e-14 85.5 254 25.2
A07p23420 Brassica napus HOM05D004947 ORTHO05D006077 3.9e-14 84.0 254 24.4
BraA07t30005Z Brassica rapa HOM05D004947 ORTHO05D006077 3.9e-14 84.0 254 24.4
MCO05G196 Micromonas commoda HOM05D004947 ORTHO05D006077 3.6e-07 60.8 212 24.1


User provided reference genes

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