Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_17653_v3 Cicer arietinum L. HOM05D005030 ORTHO05D006490 0.0e+00 2570.0 1310 100.0
Psat7g048200 Pisum sativum HOM05D005030 ORTHO05D006490 0.0e+00 2141.3 1324 83.2
Medtr8g093100 Medicago truncatula HOM05D005030 ORTHO05D006490 0.0e+00 2134.4 1320 83.0
TPR.G37387 Trifolium pratense HOM05D005030 ORTHO05D006490 0.0e+00 2117.0 1378 80.0
Glyma.08G147000 Glycine max HOM05D005030 ORTHO05D006490 0.0e+00 1986.5 1322 77.9
VMungo0251G0340 Vigna mungo HOM05D005030 ORTHO05D006490 0.0e+00 1978.0 1329 76.4
Phvul.002G270100 Phaseolus vulgaris HOM05D005030 ORTHO05D006490 0.0e+00 1969.5 1322 76.9
Glyma.05G189400 Glycine max HOM05D005030 ORTHO05D006490 0.0e+00 1946.0 1322 76.6
Lalb_Chr13g0296501 Lupinus albus HOM05D005030 ORTHO05D006490 0.0e+00 1852.4 1323 74.5
arahy.Tifrunner.gnm1.ann1.HR53B8 Arachis hypogaea HOM05D005030 ORTHO05D006490 0.0e+00 1798.5 1319 72.6
arahy.Tifrunner.gnm1.ann1.CRY23I Arachis hypogaea HOM05D005030 ORTHO05D006490 0.0e+00 1797.3 1320 72.3
Lalb_Chr12g0203281 Lupinus albus HOM05D005030 ORTHO05D006490 0.0e+00 1783.5 1324 72.4
Lj4g0022240 Lotus japonicus HOM05D005030 ORTHO05D006490 0.0e+00 1745.3 1322 70.3
Cfa002838 Carpinus fangiana HOM05D005030 ORTHO05D006490 0.0e+00 1518.1 1354 61.5
Atru.chr4.774 Acer truncatum HOM05D005030 ORTHO05D006490 0.0e+00 1463.4 1361 59.4
Dinv24313 Davidia involucrata HOM05D005030 ORTHO05D006490 0.0e+00 1463.0 1371 58.8
GSVIVG01026545001 Vitis vinifera HOM05D005030 ORTHO05D006490 0.0e+00 1453.7 1353 59.3
QL06p030436 Quercus lobata HOM05D005030 ORTHO05D006490 0.0e+00 1442.6 1485 54.7
Duzib147G1675 Durio zibethinus HOM05D005030 ORTHO05D006490 0.0e+00 1437.6 1353 59.1
Thecc.01G124600 Theobroma cacao HOM05D005030 ORTHO05D006490 0.0e+00 1430.6 1352 58.6
Actinidia06653 Actinidia chinensis HOM05D005030 ORTHO05D006490 0.0e+00 1424.5 1356 58.5
Eucgr.H04934 Eucalyptus grandis HOM05D005030 ORTHO05D006490 0.0e+00 1418.7 1337 59.0
Ciclev10024723m.g Citrus clementina HOM05D005030 ORTHO05D006490 0.0e+00 1418.3 1335 59.4
Gohir.D11G232200 Gossypium hirsutum HOM05D005030 ORTHO05D006490 0.0e+00 1416.4 1348 58.5
Potri.007G110800 Populus trichocarpa HOM05D005030 ORTHO05D006490 0.0e+00 1412.1 1348 57.6
Gorai.002G151400 Gossypium raimondii HOM05D005030 ORTHO05D006490 0.0e+00 1408.3 1348 58.2
Gohir.A11G230400 Gossypium hirsutum HOM05D005030 ORTHO05D006490 0.0e+00 1406.7 1350 58.1
Prupe.3G147500 Prunus persica HOM05D005030 ORTHO05D006490 0.0e+00 1399.4 1344 58.4
Nn5g28681 Nelumbo nucifera HOM05D005030 ORTHO05D006490 0.0e+00 1375.9 1351 55.7
TWI31G0652 Tripterygium wilfordii HOM05D005030 ORTHO05D006490 0.0e+00 1372.5 1347 56.6
Sabra07G0090700 Salix brachista HOM05D005030 ORTHO05D006490 0.0e+00 1365.1 1433 54.4
PGR102G2159 Punica granatum HOM05D005030 ORTHO05D006490 0.0e+00 1349.3 1332 55.7
RcHm_v2.0_Chr2g0120111 Rosa chinensis HOM05D005030 ORTHO05D006490 0.0e+00 1333.9 1340 55.2
Lj2A602G37 Lonicera japonica HOM05D005030 ORTHO05D006490 0.0e+00 1321.6 1395 54.3
CsaV3_6G041830 Cucumis sativus L. HOM05D005030 ORTHO05D006490 0.0e+00 1303.1 1352 54.8
Dinv05712 Davidia involucrata HOM05D005030 ORTHO05D006490 0.0e+00 1302.0 1350 55.5
CSS0019451 Camellia sinensis var. sinensis HOM05D005030 ORTHO05D006490 0.0e+00 1294.6 1465 52.9
Sed0011527 Sechium edule HOM05D005030 ORTHO05D006490 0.0e+00 1288.5 1350 54.4
ClCG01G015590 Citrullus lanatus HOM05D005030 ORTHO05D006490 0.0e+00 1287.7 1348 55.0
MBI18_g25945_MAGBIO Magnolia biondii HOM05D005030 ORTHO05D006490 0.0e+00 1284.6 1358 53.5
FvH4_1g23980 Fragaria vesca HOM05D005030 ORTHO05D006490 0.0e+00 1282.3 1355 54.1
Sopen11g001650 Solanum pennellii HOM05D005030 ORTHO05D006490 0.0e+00 1282.3 1362 52.8
FAN26G2615 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 1270.0 1351 53.3
FAN19G2772 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 1269.2 1391 52.8
FAN28G1848 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 1265.8 1391 52.4
Sc03g0005100 Simmondsia chinensis HOM05D005030 ORTHO05D006490 0.0e+00 1264.6 1330 52.6
MELO3C008038.2 Cucumis melo HOM05D005030 ORTHO05D006490 0.0e+00 1260.7 1405 52.5
Lsat_1_v5_gn_1_117161 Lactuca sativa HOM05D005030 ORTHO05D006490 0.0e+00 1260.4 1351 52.6
Cc08_g02710 Coffea canephora HOM05D005030 ORTHO05D006490 0.0e+00 1258.8 1377 52.2
FAN23G1259 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 1253.0 1392 52.0
Nitab4.5_0002909g0070 Nicotiana tabacum HOM05D005030 ORTHO05D006490 0.0e+00 1246.9 1357 52.7
Aqoxy5G02153 Aquilegia oxysepala HOM05D005030 ORTHO05D006490 0.0e+00 1236.9 1337 52.4
Migut.H01102 Erythranthe guttata HOM05D005030 ORTHO05D006490 0.0e+00 1235.7 1338 52.0
Hund04465 Selenicereus undatus HOM05D005030 ORTHO05D006490 0.0e+00 1228.8 1357 51.8
CANSAT01G2434 Cannabis sativa HOM05D005030 ORTHO05D006490 0.0e+00 1225.3 1339 52.2
CiPaw.03G127500 Carya illinoinensis HOM05D005030 ORTHO05D006490 0.0e+00 1224.9 1376 52.8
Oeu037792.2 Olea europaea HOM05D005030 ORTHO05D006490 0.0e+00 1216.8 1410 51.0
Os02g0782800 Oryza sativa ssp. japonica HOM05D005030 ORTHO05D006490 0.0e+00 1201.0 1336 50.7
AUR62017924 Chenopodium quinoa HOM05D005030 ORTHO05D006490 0.0e+00 1198.3 1321 51.5
PSO210G3052 Papaver somniferum HOM05D005030 ORTHO05D006490 0.0e+00 1196.4 1349 51.3
Peaxi162Scf00012g02419 Petunia axillaris HOM05D005030 ORTHO05D006490 0.0e+00 1194.9 1395 50.1
AUR62003613 Chenopodium quinoa HOM05D005030 ORTHO05D006490 0.0e+00 1191.4 1342 51.0
HanXRQChr02g0043651 Helianthus annuus HOM05D005030 ORTHO05D006490 0.0e+00 1190.6 1365 50.3
DCAR_001349 Daucus carota HOM05D005030 ORTHO05D006490 0.0e+00 1186.8 1423 49.5
THA.LOC104820424 Tarenaya hassleriana HOM05D005030 ORTHO05D006490 0.0e+00 1185.2 1334 51.3
Ah.03g146670 Amaranthus hybridus HOM05D005030 ORTHO05D006490 0.0e+00 1177.2 1339 50.7
Thhalv10019906m.g Eutrema salsugineum HOM05D005030 ORTHO05D006490 0.0e+00 1176.4 1354 51.5
AT3G18730 Arabidopsis thaliana HOM05D005030 ORTHO05D006490 0.0e+00 1173.7 1338 50.2
Aa31LG8G5540 Aethionema arabicum HOM05D005030 ORTHO05D006490 0.0e+00 1172.5 1333 50.9
THA.LOC104821859 Tarenaya hassleriana HOM05D005030 ORTHO05D006490 0.0e+00 1171.0 1354 51.3
Nitab4.5_0003048g0010 Nicotiana tabacum HOM05D005030 ORTHO05D006490 0.0e+00 1170.6 1386 49.6
BraA05t21931Z Brassica rapa HOM05D005030 ORTHO05D006490 0.0e+00 1165.2 1353 50.0
COL.COLO4_13999 Corchorus olitorius HOM05D005030 ORTHO05D006490 0.0e+00 1164.1 1373 51.3
PSO832G2315 Papaver somniferum HOM05D005030 ORTHO05D006490 0.0e+00 1161.4 1361 50.0
SGA_v2.0_scaffold137G35137 Striga asiatica HOM05D005030 ORTHO05D006490 0.0e+00 1160.6 1416 48.1
CARHR094120 Cardamine hirsuta HOM05D005030 ORTHO05D006490 0.0e+00 1158.7 1339 51.0
BcaC05g28579 Brassica carinata HOM05D005030 ORTHO05D006490 0.0e+00 1158.3 1359 50.0
C05p46820 Brassica napus HOM05D005030 ORTHO05D006490 0.0e+00 1158.3 1359 50.0
BolC5t33412H Brassica oleracea HOM05D005030 ORTHO05D006490 0.0e+00 1158.3 1359 50.0
Sp3g16780 Schrenkiella parvula HOM05D005030 ORTHO05D006490 0.0e+00 1157.9 1354 50.2
BcaB06g25924 Brassica carinata HOM05D005030 ORTHO05D006490 0.0e+00 1156.7 1353 50.0
AL3G32080 Arabidopsis lyrata HOM05D005030 ORTHO05D006490 0.0e+00 1153.3 1340 50.2
A05p30890 Brassica napus HOM05D005030 ORTHO05D006490 0.0e+00 1153.3 1354 49.6
ECA240G4559 Erigeron canadensis HOM05D005030 ORTHO05D006490 0.0e+00 1149.0 1303 51.7
Carub.0003s1851 Capsella rubella HOM05D005030 ORTHO05D006490 0.0e+00 1100.9 1338 49.3
Manes.12G152000 Manihot esculenta HOM05D005030 ORTHO05D006490 0.0e+00 1090.1 1053 56.9
ATR0772G104 Amborella trichopoda HOM05D005030 ORTHO05D006490 0.0e+00 1078.9 1356 47.8
Zm00001eb192940 Zea mays HOM05D005030 ORTHO05D006490 1.3e-300 1036.9 1092 53.3
MD00G1172700 Malus domestica HOM05D005030 ORTHO05D006490 4.7e-295 1018.5 1349 45.7
Rhsim10G0138800 Rhododendron simsii HOM05D005030 ORTHO05D006490 1.4e-294 1016.9 1345 47.6
unitig_0.g2514 Utricularia gibba HOM05D005030 ORTHO05D006490 9.8e-293 1010.7 1344 44.9
CDE06G1651 Ceratophyllum demersum HOM05D005030 ORTHO05D006490 2.4e-291 1006.1 1333 45.9
Cc07_g17780 Coffea canephora HOM05D005030 ORTHO05D006490 2.7e-290 1002.7 1264 47.6
HPP92_005719 Vanilla planifolia HOM05D005030 ORTHO05D006490 1.1e-267 927.5 1283 44.5
Haze_25135 Corylus avellana HOM05D005030 ORTHO05D006490 1.3e-252 877.5 911 56.0
Hma1.2p1_0006F.1_g004750 Hydrangea macrophylla HOM05D005030 ORTHO05D006490 4.3e-248 862.4 923 54.3
Solyc11g005690.3 Solanum lycopersicum HOM05D005030 ORTHO05D006490 4.7e-218 762.7 840 51.9
CiPaw.03G127200 Carya illinoinensis HOM05D005030 ORTHO05D006490 6.8e-209 732.3 800 53.6
MSTRG.2678 Avicennia marina HOM05D005030 ORTHO05D006490 1.3e-207 728.0 676 59.6
Cpa.g.sc42.108 Carica papaya HOM05D005030 ORTHO05D006490 1.3e-199 701.4 714 56.0
SHI11439 Sapria himalayana HOM05D005030 ORTHO05D006490 1.2e-197 694.9 764 52.9
TAR381G0402 Trochodendron aralioides HOM05D005030 ORTHO05D006490 6.1e-194 682.6 709 54.7
Cpa.g.sc42.107 Carica papaya HOM05D005030 ORTHO05D006490 1.7e-188 664.5 612 60.8
MD09G1255500 Malus domestica HOM05D005030 ORTHO05D006490 3.9e-188 663.3 908 47.7
CiPaw.03G127600 Carya illinoinensis HOM05D005030 ORTHO05D006490 1.4e-177 628.2 815 46.3
CiPaw.03G127100 Carya illinoinensis HOM05D005030 ORTHO05D006490 1.4e-174 618.2 473 66.0
Mapoly0047s0105 Marchantia polymorpha HOM05D005030 ORTHO05D006490 9.5e-171 605.5 1279 34.2
MSTRG.2677 Avicennia marina HOM05D005030 ORTHO05D006490 2.4e-153 547.7 599 50.9
SEGI_29284 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 2.3e-148 531.2 764 42.1
Haze_25140 Corylus avellana HOM05D005030 ORTHO05D006490 3.4e-144 517.3 354 73.2
SMO203G0163 Selaginella moellendorffii HOM05D005030 ORTHO05D006490 2.3e-140 504.6 1327 29.9
CDE08G0761 Ceratophyllum demersum HOM05D005030 ORTHO05D006490 1.3e-132 478.8 354 67.8
Pp3c6_6440 Physcomitrium patens HOM05D005030 ORTHO05D006490 3.9e-132 477.2 1334 29.7
AagrBONN_evm.TU.Sc2ySwM_228.5700 Anthoceros agrestis HOM05D005030 ORTHO05D006490 3.1e-129 467.6 1141 31.9
CAN.G802.6 Capsicum annuum HOM05D005030 ORTHO05D006490 9.0e-129 466.1 508 52.0
MD17G1248700 Malus domestica HOM05D005030 ORTHO05D000105 1.3e-127 462.2 1348 30.6
EL10Ac6g15267 Beta vulgaris HOM05D005030 ORTHO05D006490 1.0e-124 452.6 1039 33.6
SEGI_07118 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 1.6e-117 428.7 411 52.1
ECA234G2315 Erigeron canadensis HOM05D005030 ORTHO05D006490 2.5e-94 351.7 439 43.7
SEGI_08752 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 1.1e-89 336.3 679 34.6
SEGI_25247 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 1.5e-83 315.8 326 49.1
Os02g0784100 Oryza sativa ssp. japonica HOM05D005030 ORTHO05D006490 1.4e-81 309.3 238 63.4
FAN23G1614 Fragaria x ananassa HOM05D005030 ORTHO05D006490 2.2e-74 285.4 351 46.4
vmacro12845 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 1.0e-63 250.0 308 49.0
Thecc.01G125300 Theobroma cacao HOM05D005030 ORTHO05D006490 6.8e-60 237.3 367 44.7
TAR381G0325 Trochodendron aralioides HOM05D005030 ORTHO05D006490 2.5e-54 218.8 234 54.3
vmacro12844 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 6.0e-48 197.6 335 37.3
ECA234G1901 Erigeron canadensis HOM05D005030 ORTHO05D006490 1.2e-45 189.9 261 41.8
PGSC0003DMG400025561 Solanum tuberosum HOM05D005030 ORTHO05D006490 2.1e-40 172.6 268 41.4
TAR625G0665 Trochodendron aralioides HOM05D005030 ORTHO05D006490 6.6e-39 167.5 121 69.4
CBR_g36663 Chara braunii HOM05D005030 ORTHO05D006490 3.3e-38 165.2 508 28.5
vmacro12843 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 6.4e-34 151.0 202 49.0
MD17G1248600 Malus domestica HOM05D005030 ORTHO05D006490 1.2e-32 146.7 301 36.2
CBR_g61481 Chara braunii HOM05D005030 ORTHO05D001575 6.9e-28 131.0 370 28.6
Sopen11g004310 Solanum pennellii HOM05D000399 ORTHO05D000304 4.6e-24 118.2 95 57.9
TPR.G24704 Trifolium pratense HOM05D005030 ORTHO05D006490 4.6e-24 118.2 80 78.8
BcaNung06136 Brassica carinata HOM05D005030 ORTHO05D006490 1.5e-22 113.2 211 37.9
Hma1.2p1_0006F.1_g004730 Hydrangea macrophylla HOM05D005030 ORTHO05D006490 1.4e-20 106.7 162 43.2
SEGI_13201 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 1.8e-20 106.3 471 28.5
TAR376G0117 Trochodendron aralioides HOM05D005030 ORTHO05D006490 2.6e-19 102.4 162 40.1
SEGI_13008 Sequoiadendron giganteum HOM05D005030 ORTHO05D050943 1.8e-15 89.7 416 25.7
CBR_g36665 Chara braunii HOM05D005030 ORTHO05D006490 5.1e-15 88.2 451 22.6
MBI11_g38367_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D010488 4.8e-13 81.6 68 60.3
Sc05g0004550 Simmondsia chinensis HOM05D005030 ORTHO05D006490 1.4e-12 80.1 85 52.9
Actinidia09824 Actinidia chinensis HOM05D005030 ORTHO05D001675 3.2e-09 68.9 84 45.2
SEGI_37730 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 3.3e-06 58.9 284 22.9


User provided reference genes

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