Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_17244_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 0.0e+00 3509.9 1847 100.0
Psat7g004480 Pisum sativum HOM05D003986 ORTHO05D004916 0.0e+00 3195.6 1864 90.8
Ca_29522_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 0.0e+00 3152.1 1742 96.3
TPR.G12867 Trifolium pratense HOM05D003986 ORTHO05D004916 0.0e+00 3140.9 1865 89.3
Medtr8g106090 Medicago truncatula HOM05D003986 ORTHO05D004916 0.0e+00 3129.0 1865 89.2
Glyma.08G048400 Glycine max HOM05D003986 ORTHO05D004916 0.0e+00 3019.6 1874 85.0
Glyma.05G241400 Glycine max HOM05D003986 ORTHO05D004916 0.0e+00 3008.4 1874 83.4
Lj4g0022556 Lotus japonicus HOM05D003986 ORTHO05D004916 0.0e+00 3004.5 1874 85.6
VMungo0251G0132 Vigna mungo HOM05D003986 ORTHO05D004916 0.0e+00 2998.0 1874 84.4
Medtr7g117220 Medicago truncatula HOM05D003986 ORTHO05D004916 0.0e+00 2993.4 1869 85.3
Phvul.002G324500 Phaseolus vulgaris HOM05D003986 ORTHO05D004916 0.0e+00 2985.7 1874 84.3
Lalb_Chr05g0222051 Lupinus albus HOM05D003986 ORTHO05D004916 0.0e+00 2869.0 1879 81.3
arahy.Tifrunner.gnm1.ann1.R76IPR Arachis hypogaea HOM05D003986 ORTHO05D004916 0.0e+00 2858.6 1893 80.9
arahy.Tifrunner.gnm1.ann1.374THF Arachis hypogaea HOM05D003986 ORTHO05D004916 0.0e+00 2840.1 1917 79.9
Lalb_Chr16g0387401 Lupinus albus HOM05D003986 ORTHO05D004916 0.0e+00 2808.9 1876 80.0
Dinv11756 Davidia involucrata HOM05D003986 ORTHO05D004916 0.0e+00 2592.8 1905 73.4
CiPaw.06G055800 Carya illinoinensis HOM05D003986 ORTHO05D004916 0.0e+00 2579.7 1896 73.2
Manes.17G086100 Manihot esculenta HOM05D003986 ORTHO05D004916 0.0e+00 2558.5 1896 73.0
Potri.013G085000 Populus trichocarpa HOM05D003986 ORTHO05D004916 0.0e+00 2500.3 1893 71.1
MELO3C005265.2 Cucumis melo HOM05D003986 ORTHO05D004916 0.0e+00 2494.2 1898 71.5
Prupe.3G150800 Prunus persica HOM05D003986 ORTHO05D004916 0.0e+00 2486.1 1896 71.1
CsaV3_5G027880 Cucumis sativus L. HOM05D003986 ORTHO05D004916 0.0e+00 2484.5 1897 70.8
Atru.chr11.800 Acer truncatum HOM05D003986 ORTHO05D004916 0.0e+00 2481.8 1900 70.9
CANSAT78G0669 Cannabis sativa HOM05D003986 ORTHO05D004916 0.0e+00 2480.7 1890 70.7
TWI74G0603 Tripterygium wilfordii HOM05D003986 ORTHO05D004916 0.0e+00 2465.3 1900 69.9
Potri.019G054600 Populus trichocarpa HOM05D003986 ORTHO05D004916 0.0e+00 2464.9 1893 71.0
GSVIVG01011619001 Vitis vinifera HOM05D003986 ORTHO05D004916 0.0e+00 2456.8 1881 70.0
Actinidia12415 Actinidia chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2452.2 1905 69.4
MD09G1258800 Malus domestica HOM05D003986 ORTHO05D004916 0.0e+00 2444.8 1891 70.4
Sed0014719 Sechium edule HOM05D003986 ORTHO05D004916 0.0e+00 2440.2 1918 67.6
Gohir.A03G112200 Gossypium hirsutum HOM05D003986 ORTHO05D004916 0.0e+00 2435.6 1905 70.5
Gorai.005G152800 Gossypium raimondii HOM05D003986 ORTHO05D004916 0.0e+00 2423.3 1896 70.3
ClCG01G006690 Citrullus lanatus HOM05D003986 ORTHO05D004916 0.0e+00 2402.5 2109 64.2
Sabra13G0078400 Salix brachista HOM05D003986 ORTHO05D004916 0.0e+00 2376.3 1983 67.6
Eucgr.B02697 Eucalyptus grandis HOM05D003986 ORTHO05D004916 0.0e+00 2375.5 1889 68.0
QL03p038358 Quercus lobata HOM05D003986 ORTHO05D004916 0.0e+00 2365.1 1732 73.7
Nn4g24477 Nelumbo nucifera HOM05D003986 ORTHO05D004916 0.0e+00 2354.3 1900 67.7
Thecc.02G306600 Theobroma cacao HOM05D003986 ORTHO05D004916 0.0e+00 2347.0 1889 68.7
DCAR_026811 Daucus carota HOM05D003986 ORTHO05D004916 0.0e+00 2343.5 1956 66.7
Haze_08333 Corylus avellana HOM05D003986 ORTHO05D004916 0.0e+00 2342.4 2081 64.4
PGR142G4089 Punica granatum HOM05D003986 ORTHO05D004916 0.0e+00 2329.7 1894 67.2
Peaxi162Scf00937g00119 Petunia axillaris HOM05D003986 ORTHO05D004916 0.0e+00 2319.7 1896 66.5
Dinv14386 Davidia involucrata HOM05D003986 ORTHO05D004916 0.0e+00 2294.2 1896 67.6
COL.COLO4_06656 Corchorus olitorius HOM05D003986 ORTHO05D004916 0.0e+00 2292.7 1932 66.7
PSO782G5475 Papaver somniferum HOM05D003986 ORTHO05D004916 0.0e+00 2266.9 1897 65.5
Sabra19G0063600 Salix brachista HOM05D003986 ORTHO05D004916 0.0e+00 2265.0 2223 58.3
Aqoxy3G04028 Aquilegia oxysepala HOM05D003986 ORTHO05D004916 0.0e+00 2256.5 1901 64.8
MSTRG.2114 Avicennia marina HOM05D003986 ORTHO05D004916 0.0e+00 2248.0 1883 64.9
Sopen05g014610 Solanum pennellii HOM05D003986 ORTHO05D004916 0.0e+00 2245.3 1891 66.2
Solyc05g017890.4 Solanum lycopersicum HOM05D003986 ORTHO05D004916 0.0e+00 2243.4 1891 66.3
RcHm_v2.0_Chr4g0442311 Rosa chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2240.3 1906 66.5
EL10Ac6g14201 Beta vulgaris HOM05D003986 ORTHO05D004916 0.0e+00 2235.3 1890 65.9
CAN.G206.116 Capsicum annuum HOM05D003986 ORTHO05D004916 0.0e+00 2231.4 1899 65.4
TAR629G0821 Trochodendron aralioides HOM05D003986 ORTHO05D004916 0.0e+00 2229.9 1712 69.9
Migut.E00504 Erythranthe guttata HOM05D003986 ORTHO05D004916 0.0e+00 2225.3 1887 64.6
PSO063G2585 Papaver somniferum HOM05D003986 ORTHO05D004916 0.0e+00 2222.2 1859 65.5
ECA246G1343 Erigeron canadensis HOM05D003986 ORTHO05D004916 0.0e+00 2221.4 1871 66.0
FAN07G2168 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2218.4 1905 65.8
Ah.02g127910 Amaranthus hybridus HOM05D003986 ORTHO05D004916 0.0e+00 2202.6 1884 64.3
THA.LOC104807876 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 0.0e+00 2199.5 1901 63.4
HanXRQChr12g0381871 Helianthus annuus HOM05D003986 ORTHO05D004916 0.0e+00 2173.3 1884 64.9
FvH4_4g33200 Fragaria vesca HOM05D003986 ORTHO05D004916 0.0e+00 2172.5 1906 64.8
CSS0009129 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 0.0e+00 2167.5 1738 68.0
ATR0021G052 Amborella trichopoda HOM05D003986 ORTHO05D004916 0.0e+00 2166.7 1900 62.7
AUR62038486 Chenopodium quinoa HOM05D003986 ORTHO05D004916 0.0e+00 2164.8 1863 64.7
FAN22G0296 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2160.2 1904 64.7
FAN12G0920 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2153.3 1910 64.5
AL1G40240 Arabidopsis lyrata HOM05D003986 ORTHO05D004916 0.0e+00 2148.6 1880 63.6
Sp1g23110 Schrenkiella parvula HOM05D003986 ORTHO05D004916 0.0e+00 2145.5 1888 64.4
A08p26750 Brassica napus HOM05D003986 ORTHO05D004916 0.0e+00 2142.5 1878 64.1
AT1G24706 Arabidopsis thaliana HOM05D003986 ORTHO05D004916 0.0e+00 2134.4 1879 63.1
FAN17G2354 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2132.1 1910 64.1
AUR62014146 Chenopodium quinoa HOM05D003986 ORTHO05D004916 0.0e+00 2130.9 1918 62.6
Aa31LG7G9380 Aethionema arabicum HOM05D003986 ORTHO05D004916 0.0e+00 2123.6 1884 62.9
Sc14g0006590 Simmondsia chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2112.0 1792 64.8
C03p73260 Brassica napus HOM05D003986 ORTHO05D004916 0.0e+00 2111.6 1878 63.5
BraA08t34620Z Brassica rapa HOM05D003986 ORTHO05D004916 0.0e+00 2104.7 1882 63.2
THA.LOC104825570 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 0.0e+00 2097.0 1899 63.7
BolC3t19622H Brassica oleracea HOM05D003986 ORTHO05D004916 0.0e+00 2090.5 1878 63.1
Carub.0001s2544 Capsella rubella HOM05D003986 ORTHO05D004916 0.0e+00 2088.9 1877 63.0
SGA_v2.0_scaffold3G01767 Striga asiatica HOM05D003986 ORTHO05D004916 0.0e+00 2087.8 1988 60.9
CARHR026420 Cardamine hirsuta HOM05D003986 ORTHO05D004916 0.0e+00 2083.1 1852 63.3
unitig_8.g4016 Utricularia gibba HOM05D003986 ORTHO05D004916 0.0e+00 2053.1 1978 58.4
Oeu006345.3 Olea europaea HOM05D003986 ORTHO05D004916 0.0e+00 2046.6 1932 61.6
HPP92_004743 Vanilla planifolia HOM05D003986 ORTHO05D004916 0.0e+00 2008.4 1881 60.3
Thhalv10006540m.g Eutrema salsugineum HOM05D003986 ORTHO05D004916 0.0e+00 1996.9 1885 60.8
Lsat_1_v5_gn_3_102381 Lactuca sativa HOM05D003986 ORTHO05D004916 0.0e+00 1932.1 1351 73.1
CSS0026713 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 0.0e+00 1868.6 1516 67.7
Lj3C862T8 Lonicera japonica HOM05D003986 ORTHO05D004916 0.0e+00 1846.6 1505 67.9
Zm00001eb156750 Zea mays HOM05D003986 ORTHO05D004916 0.0e+00 1801.2 1864 55.3
Mapoly0001s0369 Marchantia polymorpha HOM05D003986 ORTHO05D004916 0.0e+00 1778.8 1989 53.4
AagrBONN_evm.TU.Sc2ySwM_117.1912 Anthoceros agrestis HOM05D003986 ORTHO05D004916 0.0e+00 1715.7 1977 52.0
Pp3c11_17570 Physcomitrium patens HOM05D003986 ORTHO05D004916 0.0e+00 1648.3 1753 53.1
Os01g0916800 Oryza sativa ssp. japonica HOM05D003986 ORTHO05D004916 0.0e+00 1620.1 1887 51.9
SMO145G0041 Selaginella moellendorffii HOM05D003986 ORTHO05D004916 0.0e+00 1543.5 1880 51.2
Ciclev10014076m.g Citrus clementina HOM05D003986 ORTHO05D004916 0.0e+00 1446.8 1212 67.8
Nitab4.5_0004735g0030 Nicotiana tabacum HOM05D003986 ORTHO05D004916 0.0e+00 1444.5 1269 64.7
Gohir.D02G136832 Gossypium hirsutum HOM05D003986 ORTHO05D004916 0.0e+00 1416.4 937 76.9
Nitab4.5_0000011g0120 Nicotiana tabacum HOM05D003986 ORTHO05D004916 0.0e+00 1412.1 1293 63.3
Hund24923 Selenicereus undatus HOM05D003986 ORTHO05D004916 0.0e+00 1343.6 1074 68.2
BcaB03g12045 Brassica carinata HOM05D003986 ORTHO05D004916 0.0e+00 1311.2 1478 53.9
SalBow2G1878 Salvia bowleyana HOM05D003986 ORTHO05D004916 0.0e+00 1283.5 1220 60.9
CDE05G3646 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 0.0e+00 1139.4 852 69.1
Cpa.g.sc2.153 Carica papaya HOM05D003986 ORTHO05D004916 0.0e+00 1138.6 1096 62.7
SHI04403 Sapria himalayana HOM05D003986 ORTHO05D004916 0.0e+00 1104.0 940 64.3
CDE05G1820 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 1.1e-292 1011.1 1145 55.4
CBR_g39719 Chara braunii HOM05D003986 ORTHO05D004916 2.4e-292 1010.0 1277 46.0
CAN.G71.2 Capsicum annuum HOM05D003986 ORTHO05D004916 1.9e-281 973.8 676 75.4
Ciclev10017843m.g Citrus clementina HOM05D003986 ORTHO05D004916 1.7e-274 950.7 674 73.0
Gohir.D02G136766 Gossypium hirsutum HOM05D003986 ORTHO05D004916 2.7e-248 863.6 874 61.2
BcaC05g26698 Brassica carinata HOM05D003986 ORTHO05D004916 4.0e-223 780.0 1120 45.2
CDE05G1425 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 1.6e-219 768.1 977 52.0
MCO13G375 Micromonas commoda HOM05D003986 ORTHO05D004916 2.5e-217 760.8 1317 37.2
Cpa.g.sc2.149 Carica papaya HOM05D003986 ORTHO05D004916 8.6e-194 682.6 448 80.4
Lj3P862T26 Lonicera japonica HOM05D003986 ORTHO05D004916 4.2e-164 583.9 374 77.3
PRCOL_00006124 Prasinoderma coloniale HOM05D003986 ORTHO05D004916 1.9e-148 531.9 1333 31.6
Nitab4.5_0000011g0130 Nicotiana tabacum HOM05D003986 ORTHO05D004916 7.4e-145 520.0 366 71.3
CDE05G1569 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 6.7e-138 496.9 369 68.0
Nitab4.5_0004735g0040 Nicotiana tabacum HOM05D003986 ORTHO05D004916 2.2e-133 481.9 367 67.3
Rhsim04G0125900 Rhododendron simsii HOM05D003986 ORTHO05D004916 1.3e-109 402.9 480 50.4
BcaB03g12046 Brassica carinata HOM05D003986 ORTHO05D004916 8.3e-104 383.6 293 66.2
CAN.G71.1 Capsicum annuum HOM05D003986 ORTHO05D004916 1.2e-94 353.2 524 51.7
COL.COLO4_04150 Corchorus olitorius HOM05D003986 ORTHO05D004916 5.2e-90 337.8 299 62.2
AagrBONN_evm.TU.Sc2ySwM_368.2552 Anthoceros agrestis HOM05D003986 ORTHO05D004916 6.8e-90 337.4 214 76.6
TAR371G1117 Trochodendron aralioides HOM05D003986 ORTHO05D004916 1.2e-89 336.7 540 44.6
Ca_30366_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 4.4e-89 334.7 170 99.4
Rhsim09G0087200 Rhododendron simsii HOM05D003986 ORTHO05D004916 3.3e-84 318.5 198 78.3
Cfa024658 Carpinus fangiana HOM05D003986 ORTHO05D004916 1.9e-76 292.7 1540 25.1
Nitab4.5_0000011g0140 Nicotiana tabacum HOM05D003986 ORTHO05D004916 9.6e-76 290.4 239 66.9
Cre12.g507700 Chlamydomonas reinhardtii HOM05D003986 ORTHO05D004916 3.4e-73 282.0 1125 26.5
Nitab4.5_0004735g0050 Nicotiana tabacum HOM05D003986 ORTHO05D004916 4.9e-72 278.1 262 59.9
C05p25490 Brassica napus HOM05D003986 ORTHO05D004916 7.3e-68 264.2 264 55.7
TAR371G0322 Trochodendron aralioides HOM05D003986 ORTHO05D004916 2.2e-56 226.1 488 35.0
BolC5t31277H Brassica oleracea HOM05D003986 ORTHO05D004916 5.6e-52 211.5 190 58.9
Lsat_1_v5_gn_3_86221 Lactuca sativa HOM05D003986 ORTHO05D004916 2.1e-51 209.5 220 55.0
Hund24924 Selenicereus undatus HOM05D008000 ORTHO05D010275 1.4e-50 206.8 176 63.1
Rhsim04G0143900 Rhododendron simsii HOM05D003986 ORTHO05D004916 2.4e-50 206.1 235 52.8
SHI04410 Sapria himalayana HOM05D003986 ORTHO05D004916 2.1e-46 193.0 163 60.1
Rhsim04G0143600 Rhododendron simsii HOM05D003986 ORTHO05D004916 7.9e-46 191.0 278 47.5
BcaB05g22549 Brassica carinata HOM05D003986 ORTHO05D004916 5.1e-45 188.3 242 49.6
Actinidia23394 Actinidia chinensis HOM05D003986 ORTHO05D004916 1.6e-43 183.3 404 38.4
SHI04405 Sapria himalayana HOM05D003986 ORTHO05D004916 3.6e-38 165.6 106 72.6
RcHm_v2.0_Chr2g0110801 Rosa chinensis HOM05D003986 ORTHO05D004916 5.7e-36 158.3 89 82.0
Rhsim04G0143700 Rhododendron simsii HOM05D003986 ORTHO05D004916 4.1e-34 152.1 219 44.3
TAR629G2897 Trochodendron aralioides HOM05D003986 ORTHO05D004916 4.2e-31 142.1 127 62.2
Sabra18G0054000 Salix brachista HOM05D003986 ORTHO05D004916 9.7e-28 131.0 143 58.0
Lalb_Chr18g0049821 Lupinus albus HOM05D003986 ORTHO05D004916 2.8e-27 129.4 75 89.3
MBI18_g21002_MAGBIO Magnolia biondii HOM05D003986 ORTHO05D004916 6.3e-27 128.3 105 68.6
Lalb_Chr18g0050041 Lupinus albus HOM05D003986 ORTHO05D004916 7.7e-25 121.3 69 89.9
Ciclev10015223m.g Citrus clementina HOM05D000271 ORTHO05D002152 1.4e-23 117.1 98 66.3
TPR.G39728 Trifolium pratense HOM05D003986 ORTHO05D004916 1.9e-23 116.7 78 80.8
Cpa.g.c39725 Carica papaya HOM05D003986 ORTHO05D004916 2.5e-23 116.3 87 63.2
Actinidia23393 Actinidia chinensis HOM05D003986 ORTHO05D004916 3.6e-22 112.5 124 51.6
BcaC05g26498 Brassica carinata HOM05D003986 ORTHO05D004916 2.0e-20 106.7 75 73.3
Cpa.g.sc2.147 Carica papaya HOM05D003986 ORTHO05D004916 1.7e-19 103.6 61 83.6
CSS0042784 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 2.4e-18 99.8 82 57.3
Sabra18G0053100 Salix brachista HOM05D003986 ORTHO05D004078 4.1e-18 99.0 80 67.5
Sabra18G0052900 Salix brachista HOM05D003986 ORTHO05D004916 2.6e-17 96.3 58 82.8
Sabra18G0053600 Salix brachista HOM05D003986 ORTHO05D004916 2.6e-17 96.3 58 82.8
Cpa.g.sc2.145 Carica papaya HOM05D003986 ORTHO05D004916 2.2e-16 93.2 128 47.7
Sabra18G0053500 Salix brachista HOM05D003986 ORTHO05D004916 2.2e-16 93.2 58 81.0
Atru.chr2.736 Acer truncatum HOM05D003986 ORTHO05D004916 5.5e-15 88.6 100 50.0
Psat0s3352g0200 Pisum sativum HOM05D003986 ORTHO05D020973 5.5e-15 88.6 51 94.1
Lalb_Chr05g0227571 Lupinus albus HOM05D003986 ORTHO05D004916 2.1e-14 86.7 41 97.6
COL.COLO4_04151 Corchorus olitorius HOM05D003986 ORTHO05D004916 3.6e-14 85.9 73 64.4
Psat0s3352g0120 Pisum sativum HOM05D003435 ORTHO05D020973 3.0e-13 82.8 132 44.7
VMungo0465G0002 Vigna mungo HOM05D003986 ORTHO05D004916 1.2e-12 80.9 82 56.1
COL.COLO4_22391 Corchorus olitorius HOM05D002579 ORTHO05D002775 2.6e-12 79.7 36 97.2
VMungo0266G0001 Vigna mungo HOM05D000230 ORTHO05D000176 7.5e-12 78.2 61 67.2
FAN07G2130 Fragaria x ananassa HOM05D003986 ORTHO05D004916 1.8e-10 73.6 110 54.5
TAR371G1101 Trochodendron aralioides HOM05D003986 ORTHO05D004916 1.2e-09 70.9 105 46.7
CsaV3_1G014700 Cucumis sativus L. HOM05D003986 ORTHO05D004916 2.0e-09 70.1 106 42.5
COL.COLO4_22474 Corchorus olitorius HOM05D002548 ORTHO05D003031 7.7e-09 68.2 71 46.5
Sabra18G0053300 Salix brachista HOM05D003986 ORTHO05D004916 2.7e-06 59.7 59 54.2


User provided reference genes

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