Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_17167_v3 Cicer arietinum L. HOM05D007345 ORTHO05D009277 1.0e-137 493.4 248 100.0
Medtr3g015440 Medicago truncatula HOM05D007345 ORTHO05D009277 1.8e-99 366.3 245 77.1
Glyma.05G249000 Glycine max HOM05D007345 ORTHO05D009277 1.6e-98 363.2 248 75.8
LjContig00484g0026271 Lotus japonicus HOM05D007345 ORTHO05D009277 1.0e-97 360.5 251 74.9
Phvul.002G333600 Phaseolus vulgaris HOM05D007345 ORTHO05D009277 1.6e-95 353.2 243 73.7
arahy.Tifrunner.gnm1.ann1.TRXD5D Arachis hypogaea HOM05D007345 ORTHO05D009277 6.8e-86 321.2 220 74.1
arahy.Tifrunner.gnm1.ann1.X12NHK Arachis hypogaea HOM05D007345 ORTHO05D009277 6.8e-86 321.2 220 74.1
Lalb_Chr09g0330151 Lupinus albus HOM05D007345 ORTHO05D009277 2.0e-85 319.7 240 70.4
VMungo0251G1758 Vigna mungo HOM05D007345 ORTHO05D009277 4.6e-82 308.5 254 65.4
GSVIVG01029370001 Vitis vinifera HOM05D007345 ORTHO05D009277 5.6e-80 301.6 234 66.2
Cfa017791 Carpinus fangiana HOM05D007345 ORTHO05D009277 4.0e-78 295.4 235 66.4
Atru.chr9.353 Acer truncatum HOM05D007345 ORTHO05D009277 8.9e-78 294.3 216 66.2
Ciclev10021617m.g Citrus clementina HOM05D007345 ORTHO05D009277 6.4e-76 288.1 221 65.6
CANSAT01G1136 Cannabis sativa HOM05D007345 ORTHO05D009277 5.4e-75 285.0 240 62.9
CsaV3_1G005120 Cucumis sativus L. HOM05D007345 ORTHO05D009277 5.4e-75 285.0 222 65.8
Sed0020487 Sechium edule HOM05D007345 ORTHO05D009277 2.7e-74 282.7 220 65.5
Thecc.03G072800 Theobroma cacao HOM05D007345 ORTHO05D009277 2.7e-74 282.7 244 60.2
TAR485G0005 Trochodendron aralioides HOM05D007345 ORTHO05D009277 1.3e-73 280.4 206 67.0
CiPaw.16G072000 Carya illinoinensis HOM05D007345 ORTHO05D009277 3.0e-73 279.3 237 63.3
TAR629G2718 Trochodendron aralioides HOM05D007345 ORTHO05D009277 6.6e-73 278.1 206 67.0
FAN08G2921 Fragaria x ananassa HOM05D007345 ORTHO05D009277 4.3e-72 275.4 239 58.2
TAR629G0192 Trochodendron aralioides HOM05D007345 ORTHO05D009277 4.3e-72 275.4 206 66.5
Eucgr.H00620 Eucalyptus grandis HOM05D007345 ORTHO05D009277 9.5e-72 274.2 233 62.2
Cpa.g.sc111.41 Carica papaya HOM05D007345 ORTHO05D009277 1.6e-71 273.5 241 59.3
Haze_18424 Corylus avellana HOM05D007345 ORTHO05D009277 1.6e-71 273.5 212 66.0
RcHm_v2.0_Chr7g0177311 Rosa chinensis HOM05D007345 ORTHO05D009277 1.6e-71 273.5 215 64.7
FAN18G3356 Fragaria x ananassa HOM05D007345 ORTHO05D009277 3.6e-71 272.3 240 58.3
Potri.015G029700 Populus trichocarpa HOM05D007345 ORTHO05D009277 8.1e-71 271.2 234 58.1
COL.COLO4_05810 Corchorus olitorius HOM05D007345 ORTHO05D009277 1.1e-70 270.8 224 61.2
Sc10g0008500 Simmondsia chinensis HOM05D007345 ORTHO05D009277 1.1e-70 270.8 210 62.4
Dinv13291 Davidia involucrata HOM05D007345 ORTHO05D009277 1.8e-70 270.0 235 61.3
TWI60G0762 Tripterygium wilfordii HOM05D007345 ORTHO05D009277 1.2e-69 267.3 222 60.4
AUR62033076 Chenopodium quinoa HOM05D007345 ORTHO05D009277 1.3e-68 263.8 212 61.8
FvH4_5g18270 Fragaria vesca HOM05D007345 ORTHO05D009277 1.3e-68 263.8 225 59.1
FAN04G1809 Fragaria x ananassa HOM05D007345 ORTHO05D009277 2.9e-68 262.7 223 59.6
ClCG04G012580 Citrullus lanatus HOM05D007345 ORTHO05D009277 4.9e-68 261.9 267 55.8
Hma1.2p1_0403F.1_g145230 Hydrangea macrophylla HOM05D007345 ORTHO05D009277 6.4e-68 261.5 208 61.5
Prupe.5G242200 Prunus persica HOM05D007345 ORTHO05D009277 6.4e-68 261.5 233 60.5
PGR083G0906 Punica granatum HOM05D007345 ORTHO05D009277 8.3e-68 261.2 215 61.4
Actinidia35146 Actinidia chinensis HOM05D007345 ORTHO05D009277 1.1e-67 260.8 230 61.3
EL10Ac8g19438 Beta vulgaris HOM05D007345 ORTHO05D009277 4.1e-67 258.8 209 59.3
CSS0049327 Camellia sinensis var. sinensis HOM05D007345 ORTHO05D009277 5.4e-67 258.5 229 62.0
MD06G1238300 Malus domestica HOM05D007345 ORTHO05D009277 4.6e-66 255.4 239 58.2
Cc00_g18760 Coffea canephora HOM05D007345 ORTHO05D009277 7.8e-66 254.6 254 53.5
Lj5A166T75 Lonicera japonica HOM05D007345 ORTHO05D009277 2.3e-65 253.1 232 57.8
CAN.G1909.2 Capsicum annuum HOM05D007345 ORTHO05D009277 3.9e-65 252.3 246 54.9
Sabra15G0024900 Salix brachista HOM05D007345 ORTHO05D009277 6.6e-65 251.5 220 59.1
Aqoxy3G04287 Aquilegia oxysepala HOM05D007345 ORTHO05D009277 8.6e-65 251.1 211 60.2
PSO782G0509 Papaver somniferum HOM05D007345 ORTHO05D009277 1.5e-64 250.4 210 57.1
Sopen03g029180 Solanum pennellii HOM05D007345 ORTHO05D009277 1.9e-64 250.0 249 54.2
AT3G17670 Arabidopsis thaliana HOM05D007345 ORTHO05D009277 3.3e-64 249.2 225 55.6
Solyc03g098440.4 Solanum lycopersicum HOM05D007345 ORTHO05D009277 1.6e-63 246.9 249 53.8
HanXRQChr13g0409411 Helianthus annuus HOM05D007345 ORTHO05D009277 2.1e-63 246.5 220 56.4
AL3G30780 Arabidopsis lyrata HOM05D007345 ORTHO05D009277 2.8e-63 246.1 226 54.9
Aa31LG8G4530 Aethionema arabicum HOM05D007345 ORTHO05D009277 6.2e-63 245.0 224 56.2
Manes.02G214200 Manihot esculenta HOM05D007345 ORTHO05D009277 6.2e-63 245.0 232 52.6
Carub.0003s1739 Capsella rubella HOM05D007345 ORTHO05D009277 8.1e-63 244.6 232 53.9
Nitab4.5_0000782g0230 Nicotiana tabacum HOM05D000001 ORTHO05D000003 8.1e-63 244.6 229 55.9
CDE05G0430 Ceratophyllum demersum HOM05D007345 ORTHO05D009277 1.1e-62 244.2 211 55.5
BraA05t22048Z Brassica rapa HOM05D007345 ORTHO05D009277 1.4e-62 243.8 224 54.5
unitig_0.g26 Utricularia gibba HOM05D007345 ORTHO05D009277 2.4e-62 243.0 234 50.0
Nitab4.5_0004612g0070 Nicotiana tabacum HOM05D000066 ORTHO05D000003 4.0e-62 242.3 219 56.2
A05p32180 Brassica napus HOM05D007345 ORTHO05D009277 1.2e-61 240.7 232 52.6
Sp3g15810 Schrenkiella parvula HOM05D007345 ORTHO05D009277 1.2e-61 240.7 224 54.0
AUR62034041 Chenopodium quinoa HOM05D007345 ORTHO05D009277 1.5e-61 240.4 219 57.1
Rhsim12G0136700 Rhododendron simsii HOM05D007345 ORTHO05D009277 1.5e-61 240.4 201 62.2
CARHR093010 Cardamine hirsuta HOM05D007345 ORTHO05D009277 2.6e-61 239.6 225 53.3
C05p48720 Brassica napus HOM05D007345 ORTHO05D009277 7.6e-61 238.0 224 52.7
BolC5t33608H Brassica oleracea HOM05D007345 ORTHO05D009277 7.6e-61 238.0 224 52.7
Migut.D02059 Erythranthe guttata HOM05D007345 ORTHO05D009277 7.6e-61 238.0 248 52.4
Peaxi162Scf00171g00331 Petunia axillaris HOM05D007345 ORTHO05D009277 7.6e-61 238.0 225 55.1
Thhalv10021436m.g Eutrema salsugineum HOM05D007345 ORTHO05D009277 1.7e-60 236.9 232 52.6
Oeu061194.1 Olea europaea HOM05D007345 ORTHO05D009277 2.2e-60 236.5 227 52.9
SalBow1G0799 Salvia bowleyana HOM05D007345 ORTHO05D009277 8.4e-60 234.6 262 47.7
SGA_v2.0_scaffold164G38118 Striga asiatica HOM05D007345 ORTHO05D009277 1.1e-59 234.2 215 57.7
BcaB06g25825 Brassica carinata HOM05D007345 ORTHO05D009277 2.4e-59 233.0 224 52.2
Lsat_1_v5_gn_3_108980 Lactuca sativa HOM05D007345 ORTHO05D009277 2.4e-59 233.0 232 51.7
Psat7g000360 Pisum sativum HOM05D007345 ORTHO05D009277 9.2e-59 231.1 159 73.0
HPP92_025754 Vanilla planifolia HOM05D007345 ORTHO05D009277 2.1e-55 219.9 221 51.6
HPP92_025712 Vanilla planifolia HOM05D007345 ORTHO05D009277 4.7e-55 218.8 239 49.4
Nn4g24918 Nelumbo nucifera HOM05D007345 ORTHO05D009277 3.4e-53 212.6 162 62.3
Os04g0674100 Oryza sativa ssp. japonica HOM05D007345 ORTHO05D009277 3.5e-50 202.6 234 45.7
Zm00001eb066530 Zea mays HOM05D007345 ORTHO05D009277 3.0e-49 199.5 237 45.6
PGSC0003DMG400010180 Solanum tuberosum HOM05D007345 ORTHO05D009277 1.1e-48 197.6 311 40.2
Ah.09g231730 Amaranthus hybridus HOM05D007345 ORTHO05D009277 9.6e-48 194.5 203 51.2
ATR0618G142 Amborella trichopoda HOM05D007345 ORTHO05D009277 1.3e-47 194.1 227 46.7
ECA240G0690 Erigeron canadensis HOM05D007345 ORTHO05D009277 4.9e-44 182.2 173 55.5
Pp3c11_25980 Physcomitrium patens HOM05D007345 ORTHO05D009277 1.9e-43 180.3 241 40.7
Mapoly0014s0070 Marchantia polymorpha HOM05D007345 ORTHO05D009277 3.2e-43 179.5 236 41.5
DCAR_023255 Daucus carota HOM05D007345 ORTHO05D009277 2.1e-42 176.8 183 50.3
PSO063G1698 Papaver somniferum HOM05D007345 ORTHO05D009277 3.0e-41 172.9 210 44.8
SMO352G0035 Selaginella moellendorffii HOM05D007345 ORTHO05D009277 7.4e-40 168.3 220 41.4
MELO3C001950.2 Cucumis melo HOM05D007345 ORTHO05D009277 2.1e-39 166.8 157 56.7
CBR_g52222 Chara braunii HOM05D007345 ORTHO05D009277 5.3e-38 162.2 202 41.6
vmacro16392 Vaccinium macrocarpon HOM05D007345 ORTHO05D009277 2.0e-37 160.2 391 30.4
FAN13G2172 Fragaria x ananassa HOM05D007345 ORTHO05D009277 3.4e-37 159.5 149 57.0
CAN.G1635.20 Capsicum annuum HOM05D007345 ORTHO05D009277 3.8e-36 156.0 225 44.0
Lj9C350T12 Lonicera japonica HOM05D000001 ORTHO05D009373 1.9e-35 153.7 151 55.6
AagrBONN_evm.TU.Sc2ySwM_117.2683 Anthoceros agrestis HOM05D007345 ORTHO05D009277 2.1e-34 150.2 173 45.1
SEGI_13495 Sequoiadendron giganteum HOM05D007345 ORTHO05D009277 7.9e-34 148.3 177 48.0
MSTRG.9709 Avicennia marina HOM05D007345 ORTHO05D009277 7.6e-29 131.7 113 60.2
Zm00001eb184330 Zea mays HOM05D007345 ORTHO05D009277 3.8e-28 129.4 153 44.4
Eucgr.H00622 Eucalyptus grandis HOM05D007345 ORTHO05D009277 1.1e-24 117.9 99 58.6
Cre16.g674534 Chlamydomonas reinhardtii HOM05D007345 ORTHO05D009277 1.5e-16 90.9 203 29.6
PRCOL_00001636 Prasinoderma coloniale HOM05D007345 ORTHO05D009277 1.6e-10 70.9 54 55.6
ECA238G4657 Erigeron canadensis HOM05D006295 ORTHO05D008061 1.8e-09 67.4 152 30.3
Hund22393 Selenicereus undatus HOM05D007345 ORTHO05D009277 8.2e-07 58.5 50 54.0
CsaV3_3G028470 Cucumis sativus L. HOM05D006210 ORTHO05D007510 2.4e-06 57.0 138 31.2
ClCG00G001600 Citrullus lanatus HOM05D006210 ORTHO05D007510 4.1e-06 56.2 139 30.9
ClCG07G001460 Citrullus lanatus HOM05D006210 ORTHO05D007510 4.1e-06 56.2 139 30.9
Os12g0636100 Oryza sativa ssp. japonica HOM05D001789 ORTHO05D001755 9.1e-06 55.1 99 30.3


User provided reference genes

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