Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_17076_v3 Cicer arietinum L. HOM05D004480 ORTHO05D005546 2.9e-252 874.8 457 100.0
Medtr4g094615 Medicago truncatula HOM05D004480 ORTHO05D005546 8.9e-225 783.5 461 88.5
Glyma.18G043300 Glycine max HOM05D004480 ORTHO05D005546 3.1e-217 758.4 461 86.1
TPR.G4936 Trifolium pratense HOM05D004480 ORTHO05D005546 7.6e-216 753.8 462 86.8
arahy.Tifrunner.gnm1.ann1.0BX3U4 Arachis hypogaea HOM05D004480 ORTHO05D005546 5.6e-211 737.6 458 84.7
Lj1g0018422 Lotus japonicus HOM05D004480 ORTHO05D005546 5.6e-211 737.6 461 84.4
Phvul.001G227600 Phaseolus vulgaris HOM05D004480 ORTHO05D005546 8.9e-209 730.3 461 83.3
VMungo1383G0315 Vigna mungo HOM05D004480 ORTHO05D005546 2.7e-205 718.8 460 82.0
Lalb_Chr08g0233091 Lupinus albus HOM05D004480 ORTHO05D005546 3.6e-202 708.4 465 81.5
Psat7g090480 Pisum sativum HOM05D004480 ORTHO05D005546 1.3e-199 699.9 397 90.2
VMungo1309G1911 Vigna mungo HOM05D004480 ORTHO05D005546 1.3e-196 689.9 460 80.4
Manes.17G005700 Manihot esculenta HOM05D004480 ORTHO05D005546 1.8e-193 679.5 473 75.7
QL11p020579 Quercus lobata HOM05D004480 ORTHO05D005546 5.3e-193 677.9 468 75.9
arahy.Tifrunner.gnm1.ann1.JT43NG Arachis hypogaea HOM05D004480 ORTHO05D005546 2.6e-192 675.6 458 79.5
Glyma.11G213400 Glycine max HOM05D004480 ORTHO05D005546 1.4e-190 669.8 366 91.8
Thecc.05G221800 Theobroma cacao HOM05D004480 ORTHO05D005546 3.2e-190 668.7 466 75.1
Duzib128G0969 Durio zibethinus HOM05D004480 ORTHO05D005546 3.0e-188 662.1 461 75.1
MD01G1035500 Malus domestica HOM05D004480 ORTHO05D005546 5.6e-187 657.9 471 74.3
MD15G1320300 Malus domestica HOM05D004480 ORTHO05D005546 5.6e-187 657.9 471 73.7
Cfa008538 Carpinus fangiana HOM05D004480 ORTHO05D005546 4.8e-186 654.8 475 72.8
Atru.chr11.1453 Acer truncatum HOM05D004480 ORTHO05D005546 5.8e-184 647.9 467 72.8
Atru.chr11.1483 Acer truncatum HOM05D004480 ORTHO05D005546 5.8e-184 647.9 467 72.8
Gohir.A08G013400 Gossypium hirsutum HOM05D004480 ORTHO05D005546 5.8e-184 647.9 464 73.9
Gorai.004G019100 Gossypium raimondii HOM05D004480 ORTHO05D005546 5.8e-184 647.9 464 73.7
Actinidia18384 Actinidia chinensis HOM05D004480 ORTHO05D005546 1.0e-183 647.1 468 73.5
CiPaw.01G203500 Carya illinoinensis HOM05D004480 ORTHO05D005546 1.3e-183 646.7 475 73.5
Hma1.2p1_0513F.1_g169740 Hydrangea macrophylla HOM05D004480 ORTHO05D005546 1.3e-183 646.7 473 72.7
Gohir.D08G023800 Gossypium hirsutum HOM05D004480 ORTHO05D005546 2.2e-183 646.0 464 73.7
RcHm_v2.0_Chr1g0334711 Rosa chinensis HOM05D004480 ORTHO05D005546 3.8e-183 645.2 469 71.6
GSVIVG01038269001 Vitis vinifera HOM05D004480 ORTHO05D005546 6.5e-183 644.4 471 73.0
Sed0006001 Sechium edule HOM05D004480 ORTHO05D005546 8.4e-183 644.0 478 71.8
Ciclev10008180m.g Citrus clementina HOM05D004480 ORTHO05D005546 2.5e-182 642.5 473 71.0
PGR083G0026 Punica granatum HOM05D004480 ORTHO05D005546 7.1e-182 641.0 468 72.2
Nn7g35785 Nelumbo nucifera HOM05D004480 ORTHO05D005546 9.3e-182 640.6 472 71.6
Prupe.5G084300 Prunus persica HOM05D004480 ORTHO05D005546 9.3e-182 640.6 489 70.6
CANSAT21G2297 Cannabis sativa HOM05D004480 ORTHO05D005546 1.2e-181 640.2 472 71.6
RcHm_v2.0_Chr7g0210541 Rosa chinensis HOM05D004480 ORTHO05D005546 1.2e-181 640.2 469 71.2
CsaV3_3G003300 Cucumis sativus L. HOM05D004480 ORTHO05D005546 4.6e-181 638.3 481 70.1
FAN03G0050 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.0e-180 637.1 475 70.5
FAN01G1951 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.3e-180 636.7 465 71.6
PGR119G0799 Punica granatum HOM05D004480 ORTHO05D005546 1.3e-180 636.7 466 72.3
MELO3C013997.2 Cucumis melo HOM05D004480 ORTHO05D005546 3.3e-179 632.1 481 69.2
FvH4_4g10760 Fragaria vesca HOM05D004480 ORTHO05D005546 3.3e-179 632.1 460 70.2
SGA_v2.0_scaffold19G08907 Striga asiatica HOM05D004480 ORTHO05D005546 5.7e-179 631.3 477 71.3
Eucgr.H00240 Eucalyptus grandis HOM05D004480 ORTHO05D005546 7.4e-179 630.9 465 71.0
FAN12G3644 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.3e-178 630.2 460 70.2
Potri.017G001100 Populus trichocarpa HOM05D004480 ORTHO05D005546 2.4e-177 625.9 469 71.2
Cc03_g16200 Coffea canephora HOM05D004480 ORTHO05D005546 1.5e-176 623.2 468 70.3
CSS0010781 Camellia sinensis var. sinensis HOM05D004480 ORTHO05D005546 2.0e-176 622.9 473 71.5
MSTRG.22059 Avicennia marina HOM05D004480 ORTHO05D005546 3.4e-176 622.1 490 69.4
SGA_v2.0_scaffold25G11023 Striga asiatica HOM05D004480 ORTHO05D005546 7.6e-176 620.9 487 69.4
SalBow1G2458 Salvia bowleyana HOM05D004480 ORTHO05D005546 2.2e-175 619.4 463 70.2
MBI07_g30868_MAGBIO Magnolia biondii HOM05D004480 ORTHO05D005546 2.9e-175 619.0 499 66.9
TAR626G1520 Trochodendron aralioides HOM05D004480 ORTHO05D005546 6.5e-175 617.8 504 67.9
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.5e-174 615.9 459 70.6
vmacro20035 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 2.5e-174 615.9 480 70.4
TWI74G1000 Tripterygium wilfordii HOM05D004480 ORTHO05D005546 5.5e-174 614.8 473 70.4
vmacro00734 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 2.1e-173 612.8 512 67.8
Sc03g0007800 Simmondsia chinensis HOM05D004480 ORTHO05D005546 2.3e-172 609.4 474 68.4
Hund12181 Selenicereus undatus HOM05D004480 ORTHO05D005546 3.9e-172 608.6 471 69.4
Dinv39175 Davidia involucrata HOM05D004480 ORTHO05D005546 5.1e-172 608.2 449 72.6
Sopen01g003100 Solanum pennellii HOM05D004480 ORTHO05D005546 8.7e-172 607.4 463 69.1
FAN12G1968 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.1e-171 607.1 445 69.4
A03p48230 Brassica napus HOM05D004480 ORTHO05D005546 2.5e-171 605.9 463 70.2
BraA03t13931Z Brassica rapa HOM05D004480 ORTHO05D005546 2.5e-171 605.9 466 70.0
Migut.N03010 Erythranthe guttata HOM05D004480 ORTHO05D005546 2.5e-171 605.9 477 67.1
Oeu019179.1 Olea europaea HOM05D004480 ORTHO05D005546 4.3e-171 605.1 523 65.2
BcaB01g00536 Brassica carinata HOM05D004480 ORTHO05D005546 5.7e-171 604.7 463 70.6
Nitab4.5_0002844g0040 Nicotiana tabacum HOM05D004480 ORTHO05D005546 1.3e-170 603.6 474 68.1
Solyc01g007120.3 Solanum lycopersicum HOM05D004480 ORTHO05D005546 2.2e-170 602.8 460 69.1
BcaC06g33042 Brassica carinata HOM05D004480 ORTHO05D005546 8.2e-170 600.9 462 70.1
PGSC0003DMG400021321 Solanum tuberosum HOM05D004480 ORTHO05D005546 1.1e-169 600.5 460 68.7
C07p46260 Brassica napus HOM05D004480 ORTHO05D005546 2.4e-169 599.4 463 70.2
BraA01t02261Z Brassica rapa HOM05D004480 ORTHO05D005546 6.9e-169 597.8 474 68.4
TAR623G1647 Trochodendron aralioides HOM05D004480 ORTHO05D005546 6.9e-169 597.8 504 66.1
BraA09t39892Z Brassica rapa HOM05D004480 ORTHO05D005546 1.2e-168 597.0 467 69.8
THA.LOC104827565 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 4.5e-168 595.1 472 68.9
A09p44300 Brassica napus HOM05D004480 ORTHO05D005546 7.7e-168 594.3 462 69.7
HanXRQChr14g0458331 Helianthus annuus HOM05D004480 ORTHO05D005546 1.0e-167 594.0 476 69.3
HanXRQChr15g0465141 Helianthus annuus HOM05D004480 ORTHO05D005546 1.0e-167 594.0 473 69.3
A01p23550 Brassica napus HOM05D004480 ORTHO05D005546 1.3e-167 593.6 471 67.9
Sed0005158 Sechium edule HOM05D004480 ORTHO05D005546 3.8e-167 592.0 395 75.7
Sp5g10950 Schrenkiella parvula HOM05D004480 ORTHO05D005546 6.5e-167 591.3 469 67.6
Dinv41802 Davidia involucrata HOM05D004480 ORTHO05D005546 2.5e-166 589.3 390 79.0
SalBow6G1632 Salvia bowleyana HOM05D004480 ORTHO05D005546 2.5e-166 589.3 468 67.7
Peaxi162Scf00586g00512 Petunia axillaris HOM05D004480 ORTHO05D005546 4.2e-166 588.6 453 68.7
BcaNung06395 Brassica carinata HOM05D004480 ORTHO05D005546 5.5e-166 588.2 464 68.5
C01p29210 Brassica napus HOM05D004480 ORTHO05D005546 5.5e-166 588.2 464 68.5
BolC7t45142H Brassica oleracea HOM05D004480 ORTHO05D005546 2.7e-165 585.9 457 69.6
BolC1t02850H Brassica oleracea HOM05D004480 ORTHO05D005546 3.6e-165 585.5 479 67.0
FvH4_7g06440 Fragaria vesca HOM05D004480 ORTHO05D005546 5.1e-164 581.6 378 76.2
Sabra17G0005500 Salix brachista HOM05D000001 ORTHO05D005546 6.7e-164 581.3 545 60.9
THA.LOC104802357 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 3.3e-163 578.9 459 69.5
DCAR_011737 Daucus carota HOM05D004480 ORTHO05D005546 2.2e-162 576.2 522 62.1
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.2e-162 576.2 459 67.8
Nitab4.5_0002686g0020 Nicotiana tabacum HOM05D004480 ORTHO05D005546 2.8e-162 575.9 472 66.3
COL.COLO4_23990 Corchorus olitorius HOM05D004480 ORTHO05D005546 4.8e-162 575.1 463 67.2
AL5G31690 Arabidopsis lyrata HOM05D004480 ORTHO05D005546 8.2e-162 574.3 463 68.3
Carub.0005s1764 Capsella rubella HOM05D004480 ORTHO05D005546 1.4e-161 573.5 463 67.8
BcaNung00392 Brassica carinata HOM05D004480 ORTHO05D005546 3.1e-161 572.4 458 67.5
Thhalv10010355m.g Eutrema salsugineum HOM05D004480 ORTHO05D005546 6.9e-161 571.2 466 66.3
Rhsim09G0001300 Rhododendron simsii HOM05D004480 ORTHO05D005546 7.7e-160 567.8 430 71.2
CARHR160850 Cardamine hirsuta HOM05D004480 ORTHO05D005546 1.4e-158 563.5 466 66.7
ATR0743G007 Amborella trichopoda HOM05D004480 ORTHO05D005546 4.7e-157 558.5 484 63.0
ECA248G1292 Erigeron canadensis HOM05D004480 ORTHO05D005546 3.0e-156 555.8 460 65.9
Cpa.g.sc9.237 Carica papaya HOM05D004480 ORTHO05D005546 5.2e-156 555.1 471 65.0
C08p26540 Brassica napus HOM05D004480 ORTHO05D005546 6.7e-156 554.7 468 66.2
HanXRQChr15g0464981 Helianthus annuus HOM05D004480 ORTHO05D005546 5.7e-155 551.6 332 81.9
BolC8t50268H Brassica oleracea HOM05D004480 ORTHO05D005546 6.3e-154 548.1 481 65.1
PSO732G0488 Papaver somniferum HOM05D004480 ORTHO05D005546 3.1e-153 545.8 459 66.0
PSO675G8718 Papaver somniferum HOM05D004480 ORTHO05D005546 1.2e-152 543.9 459 65.8
Os01g0888700 Oryza sativa ssp. japonica HOM05D004480 ORTHO05D005546 2.0e-152 543.1 501 60.5
AT3G51270 Arabidopsis thaliana HOM05D004480 ORTHO05D005546 3.5e-152 542.3 467 65.1
Haze_11102 Corylus avellana HOM05D004480 ORTHO05D005546 6.5e-151 538.1 464 62.7
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 1.1e-150 537.3 452 64.2
Duzib177G0198 Durio zibethinus HOM05D004480 ORTHO05D005546 3.2e-150 535.8 400 72.0
Zm00001eb145320 Zea mays HOM05D004480 ORTHO05D005546 3.6e-149 532.3 482 61.0
unitig_62.g23773 Utricularia gibba HOM05D004480 ORTHO05D005546 2.6e-147 526.2 503 61.0
Zm00001eb365940 Zea mays HOM05D004480 ORTHO05D005546 3.7e-146 522.3 492 58.5
Oeu061379.1 Olea europaea HOM05D004480 ORTHO05D005546 4.8e-146 521.9 286 88.8
BcaC09g50090 Brassica carinata HOM05D004480 ORTHO05D005546 8.2e-146 521.2 445 64.7
CAN.G574.17 Capsicum annuum HOM05D004480 ORTHO05D005546 1.1e-145 520.8 433 65.8
AUR62001702 Chenopodium quinoa HOM05D004480 ORTHO05D005546 5.0e-143 511.9 459 62.1
Lju124A7T24 Lonicera japonica HOM05D004480 ORTHO05D005546 5.0e-143 511.9 279 87.1
Lsat_1_v5_gn_5_33821 Lactuca sativa HOM05D004480 ORTHO05D005546 1.4e-140 503.8 465 61.5
Mapoly0052s0036 Marchantia polymorpha HOM05D004480 ORTHO05D005546 2.3e-140 503.1 455 58.5
CDE02G2467 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 4.1e-137 492.3 472 58.3
CDE09G0719 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 4.1e-137 492.3 387 67.7
SMO203G0211 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 7.7e-136 488.0 337 71.2
Aqoxy2G00126 Aquilegia oxysepala HOM05D004480 ORTHO05D005546 2.3e-135 486.5 500 56.0
Pp3c20_22360 Physcomitrium patens HOM05D004480 ORTHO05D005546 4.9e-130 468.8 464 55.8
SHI53263 Sapria himalayana HOM05D004480 ORTHO05D005546 2.4e-129 466.5 334 71.0
CDE09G0674 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 5.4e-129 465.3 447 60.6
AagrBONN_evm.TU.Sc2ySwM_228.3019 Anthoceros agrestis HOM05D004480 ORTHO05D005546 3.8e-127 459.1 330 68.5
ClCG00G001030 Citrullus lanatus HOM05D004480 ORTHO05D005546 5.6e-126 455.3 423 60.0
CDE02G0168 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 2.0e-123 446.8 359 65.5
ClCG10G003270 Citrullus lanatus HOM05D004480 ORTHO05D005546 2.6e-123 446.4 564 50.4
CDE09G1409 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 2.4e-121 439.9 441 58.7
CBR_g22944 Chara braunii HOM05D004480 ORTHO05D005546 2.7e-120 436.4 293 71.0
AUR62020079 Chenopodium quinoa HOM05D004480 ORTHO05D005546 1.2e-112 411.0 467 54.0
CDE09G0134 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 5.1e-103 379.0 287 68.3
SEGI_41177 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 1.5e-99 367.5 390 53.8
PRCOL_00001861 Prasinoderma coloniale HOM05D004480 ORTHO05D005546 1.1e-97 361.3 363 53.4
MCO09G317 Micromonas commoda HOM05D004480 ORTHO05D005546 6.0e-96 355.5 337 55.5
Migut.O00494 Erythranthe guttata HOM05D004480 ORTHO05D005546 3.0e-79 300.1 477 42.3
Cre03.g159900 Chlamydomonas reinhardtii HOM05D004480 ORTHO05D005546 2.7e-72 276.9 260 55.4
Ciclev10020879m.g Citrus clementina HOM05D004480 ORTHO05D005546 1.1e-65 255.0 466 41.6
Cfa009489 Carpinus fangiana HOM05D004480 ORTHO05D005546 2.4e-52 210.7 380 36.6
Medtr8g090145 Medicago truncatula HOM05D004480 ORTHO05D005546 9.4e-41 172.2 179 62.0
HPP92_020625 Vanilla planifolia HOM05D004480 ORTHO05D005546 2.7e-40 170.6 242 48.8
ClCG00G000020 Citrullus lanatus HOM05D004480 ORTHO05D005546 3.9e-39 166.8 170 54.7
SMO327G0006 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 1.3e-37 161.8 120 70.0
SEGI_14248 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 4.8e-29 133.3 81 77.8
Ca_25752_v3 Cicer arietinum L. HOM05D009226 ORTHO05D010767 1.1e-28 132.1 89 86.5
Zm00001eb233680 Zea mays HOM05D009386 ORTHO05D011419 2.5e-25 120.9 155 45.2
FAN07G0363 Fragaria x ananassa HOM05D004480 ORTHO05D005546 7.2e-25 119.4 195 44.1
Oeu061378.1 Olea europaea HOM05D004480 ORTHO05D005546 2.0e-19 101.3 185 43.8
Zm00001eb393850 Zea mays HOM05D009386 ORTHO05D011419 2.5e-17 94.4 108 48.1
Lju124A7T25 Lonicera japonica HOM05D004480 ORTHO05D005546 5.2e-15 86.7 203 39.4
Zm00001eb011520 Zea mays HOM05D009386 ORTHO05D011419 3.7e-13 80.5 171 35.1
Medtr4g087670 Medicago truncatula HOM05D004480 ORTHO05D263555 6.1e-08 63.2 44 63.6
AT2G24990 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 1.0e-07 62.4 199 25.1
Carub.0004s0455 Capsella rubella HOM05D003858 ORTHO05D005878 1.0e-07 62.4 199 25.1
CARHR116740 Cardamine hirsuta HOM05D003858 ORTHO05D005878 1.8e-07 61.6 291 23.4
Sp4g03970 Schrenkiella parvula HOM05D003858 ORTHO05D005878 5.2e-07 60.1 294 25.5
PSO170G6136 Papaver somniferum HOM05D003858 ORTHO05D005878 2.6e-06 57.8 220 24.1
AL7G45930 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 5.8e-06 56.6 287 23.3
AL4G16080 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 9.8e-06 55.8 291 23.0
AT5G37350 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 9.8e-06 55.8 291 23.0


User provided reference genes

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