Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_16888_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 8.2e-310 1066.2 542 100.0
Medtr3g094760 Medicago truncatula HOM05D004947 ORTHO05D006077 1.2e-244 849.7 531 80.4
TPR.G6951 Trifolium pratense HOM05D004947 ORTHO05D006077 1.7e-227 792.7 538 76.4
Lj1g0026570 Lotus japonicus HOM05D004947 ORTHO05D006077 3.3e-210 735.3 545 69.5
Psat5g067160 Pisum sativum HOM05D004947 ORTHO05D006077 2.7e-188 662.5 463 72.4
arahy.Tifrunner.gnm1.ann1.XRAY4T Arachis hypogaea HOM05D004947 ORTHO05D006077 5.1e-179 631.7 541 62.5
arahy.Tifrunner.gnm1.ann1.V2ZAQJ Arachis hypogaea HOM05D004947 ORTHO05D006077 2.8e-177 625.9 541 62.3
Glyma.06G145800 Glycine max HOM05D004947 ORTHO05D006077 1.5e-175 620.2 578 60.0
Lalb_Chr11g0068011 Lupinus albus HOM05D004947 ORTHO05D006077 3.4e-175 619.0 506 65.2
Phvul.009G140300 Phaseolus vulgaris HOM05D004947 ORTHO05D006077 1.2e-167 594.0 574 58.0
Ca_17699_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 2.3e-163 579.7 507 61.9
TPR.G2194 Trifolium pratense HOM05D004947 ORTHO05D006077 8.5e-158 561.2 520 58.3
Duzib147G0355 Durio zibethinus HOM05D004947 ORTHO05D006077 7.3e-141 505.0 507 55.2
Cfa002745 Carpinus fangiana HOM05D004947 ORTHO05D006077 2.8e-140 503.1 487 56.5
QL06p032353 Quercus lobata HOM05D004947 ORTHO05D006077 1.4e-136 490.7 486 55.1
Thecc.01G111600 Theobroma cacao HOM05D004947 ORTHO05D006077 1.8e-136 490.3 537 52.0
Atru.chr4.372 Acer truncatum HOM05D004947 ORTHO05D006077 4.6e-135 485.7 492 52.6
Atru.chr4.373 Acer truncatum HOM05D004947 ORTHO05D006077 4.6e-135 485.7 492 52.6
Gorai.003G046500 Gossypium raimondii HOM05D004947 ORTHO05D006077 1.0e-134 484.6 528 51.9
Gohir.D03G045400 Gossypium hirsutum HOM05D004947 ORTHO05D006077 6.6e-134 481.9 521 52.4
Gohir.A02G134000 Gossypium hirsutum HOM05D004947 ORTHO05D006077 1.9e-133 480.3 528 51.7
Dinv42703 Davidia involucrata HOM05D004947 ORTHO05D006077 1.2e-132 477.6 491 54.8
TAR625G0980 Trochodendron aralioides HOM05D004947 ORTHO05D006077 2.8e-132 476.5 522 51.3
COL.COLO4_11020 Corchorus olitorius HOM05D004947 ORTHO05D006077 6.2e-132 475.3 514 51.9
Ciclev10025244m.g Citrus clementina HOM05D004947 ORTHO05D006077 1.2e-130 471.1 533 50.7
TAR376G0315 Trochodendron aralioides HOM05D004947 ORTHO05D006077 9.8e-130 468.0 514 51.6
Sc03g0004250 Simmondsia chinensis HOM05D004947 ORTHO05D006077 7.8e-127 458.4 495 51.5
CiPaw.03G134900 Carya illinoinensis HOM05D004947 ORTHO05D006077 6.8e-123 445.3 444 52.7
Nitab4.5_0002843g0020 Nicotiana tabacum HOM05D004947 ORTHO05D006077 1.5e-122 444.1 524 50.4
Prupe.6G175000 Prunus persica HOM05D004947 ORTHO05D006077 9.8e-122 441.4 513 49.3
CiPaw.04G092600 Carya illinoinensis HOM05D004947 ORTHO05D006077 1.3e-121 441.0 420 56.0
Manes.12G141400 Manihot esculenta HOM05D004947 ORTHO05D006077 8.3e-121 438.3 532 47.6
Sopen04g023630 Solanum pennellii HOM05D004947 ORTHO05D006077 1.1e-120 438.0 523 48.6
Peaxi162Scf01006g00315 Petunia axillaris HOM05D004947 ORTHO05D006077 5.4e-120 435.6 498 51.0
PGR102G0173 Punica granatum HOM05D004947 ORTHO05D006077 1.6e-119 434.1 532 46.2
MBI03_g11138_MAGBIO Magnolia biondii HOM05D004947 ORTHO05D006077 2.1e-119 433.7 474 50.6
CsaV3_6G045960 Cucumis sativus L. HOM05D004947 ORTHO05D006077 2.7e-119 433.3 494 50.2
PGSC0003DMG402012957 Solanum tuberosum HOM05D004947 ORTHO05D006077 2.7e-119 433.3 530 49.1
TWI74G1183 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 2.7e-119 433.3 518 50.0
CAN.G1854.1 Capsicum annuum HOM05D004947 ORTHO05D006077 7.8e-119 431.8 520 49.2
Oeu056486.1 Olea europaea HOM05D004947 ORTHO05D006077 1.0e-118 431.4 479 49.9
vmacro12909 Vaccinium macrocarpon HOM05D004947 ORTHO05D006077 1.0e-118 431.4 559 45.8
RcHm_v2.0_Chr2g0116221 Rosa chinensis HOM05D004947 ORTHO05D006077 1.3e-118 431.0 492 49.6
Nitab4.5_0000156g0160 Nicotiana tabacum HOM05D004947 ORTHO05D006077 1.7e-118 430.6 535 48.6
AUR62003314 Chenopodium quinoa HOM05D004947 ORTHO05D006077 1.5e-117 427.6 506 48.2
ClCG01G019270 Citrullus lanatus HOM05D004947 ORTHO05D006077 4.3e-117 426.0 562 45.9
CANSAT01G0537 Cannabis sativa HOM05D004947 ORTHO05D006077 9.5e-117 424.9 547 44.6
Solyc04g054170.4 Solanum lycopersicum HOM05D004947 ORTHO05D006077 1.6e-116 424.1 554 46.2
Psat7g052040 Pisum sativum HOM05D004947 ORTHO05D006077 2.8e-116 423.3 386 57.3
Ah.02g124420 Amaranthus hybridus HOM05D004947 ORTHO05D006077 5.2e-115 419.1 512 48.0
HanXRQChr14g0446211 Helianthus annuus HOM05D004947 ORTHO05D006077 6.8e-115 418.7 509 47.0
Potri.005G083600 Populus trichocarpa HOM05D004947 ORTHO05D006077 1.7e-113 414.1 495 49.5
Cc07_g16050 Coffea canephora HOM05D004947 ORTHO05D006077 4.9e-113 412.5 507 46.7
FAN23G3004 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.4e-112 411.0 539 45.5
EL10Ac6g14744 Beta vulgaris HOM05D004947 ORTHO05D006077 3.2e-112 409.8 508 47.2
HanXRQChr15g0471901 Helianthus annuus HOM05D004947 ORTHO05D006077 9.2e-112 408.3 485 47.0
Actinidia16961 Actinidia chinensis HOM05D004947 ORTHO05D006077 2.1e-111 407.1 528 47.5
Haze_25032 Corylus avellana HOM05D004947 ORTHO05D006077 7.8e-111 405.2 485 48.0
PSO675G5310 Papaver somniferum HOM05D004947 ORTHO05D006077 5.1e-110 402.5 540 43.9
FAN28G2993 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.1e-109 401.4 499 46.9
Migut.L00078 Erythranthe guttata HOM05D004947 ORTHO05D006077 1.5e-109 401.0 496 48.0
SGA_v2.0_scaffold47G17714 Striga asiatica HOM05D004947 ORTHO05D006077 1.9e-109 400.6 547 45.3
SalBow5G4162 Salvia bowleyana HOM05D004947 ORTHO05D006077 5.6e-109 399.1 573 43.6
Sabra07G0068900 Salix brachista HOM05D004947 ORTHO05D006077 7.3e-109 398.7 542 45.9
Eucgr.H04830 Eucalyptus grandis HOM05D004947 ORTHO05D006077 9.6e-109 398.3 414 51.0
Manes.13G077600 Manihot esculenta HOM05D004947 ORTHO05D006077 9.6e-109 398.3 419 52.7
PSO541G1244 Papaver somniferum HOM05D004947 ORTHO05D006077 1.6e-108 397.5 541 43.3
Lsat_1_v5_gn_2_65461 Lactuca sativa HOM05D004947 ORTHO05D006077 6.2e-108 395.6 510 45.7
Sed0009808 Sechium edule HOM05D004947 ORTHO05D006077 3.1e-107 393.3 433 50.8
DCAR_014256 Daucus carota HOM05D004947 ORTHO05D006077 5.2e-107 392.5 512 44.9
TWI53G2111 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 1.2e-106 391.3 534 46.4
THA.LOC104818481 Tarenaya hassleriana HOM05D004947 ORTHO05D006077 2.0e-106 390.6 503 45.7
MD01G1017700 Malus domestica HOM05D004947 ORTHO05D006077 4.4e-106 389.4 539 43.4
Rhsim10G0151500 Rhododendron simsii HOM05D004947 ORTHO05D006077 2.9e-105 386.7 477 47.6
Hund19664 Selenicereus undatus HOM05D004947 ORTHO05D006077 3.8e-105 386.3 533 46.0
ECA238G1011 Erigeron canadensis HOM05D004947 ORTHO05D006077 4.2e-104 382.9 484 44.4
Nn1g00054 Nelumbo nucifera HOM05D004947 ORTHO05D006077 5.4e-104 382.5 425 50.4
FvH4_1g24620 Fragaria vesca HOM05D004947 ORTHO05D006077 1.3e-102 377.9 509 45.2
FAN26G0674 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.3e-102 377.9 519 44.1
CDE05G2725 Ceratophyllum demersum HOM05D004947 ORTHO05D006077 6.6e-102 375.6 536 44.0
Aqoxy5G01985_Aqoxy5G01986 Aquilegia oxysepala HOM05D004947 ORTHO05D006077 5.6e-101 372.5 529 43.1
Lj4A878G34 Lonicera japonica HOM05D004947 ORTHO05D006077 1.6e-100 370.9 407 51.1
SHI11672 Sapria himalayana HOM05D004947 ORTHO05D006077 1.5e-98 364.4 485 46.0
unitig_88.g27735 Utricularia gibba HOM05D004947 ORTHO05D006077 2.0e-98 364.0 568 41.0
FAN19G2885 Fragaria x ananassa HOM05D004947 ORTHO05D006077 5.8e-98 362.5 508 43.9
HPP92_005876 Vanilla planifolia HOM05D004947 ORTHO05D006077 5.8e-98 362.5 461 44.9
Aa31LG1G17040 Aethionema arabicum HOM05D004947 ORTHO05D006077 4.9e-97 359.4 539 39.5
Sp2g28010 Schrenkiella parvula HOM05D004947 ORTHO05D006077 1.2e-95 354.8 517 40.4
BraA06t26105Z Brassica rapa HOM05D004947 ORTHO05D006077 1.6e-95 354.4 482 42.3
A06p31700 Brassica napus HOM05D004947 ORTHO05D006077 7.9e-95 352.1 480 42.1
BcaC01g02724 Brassica carinata HOM05D004947 ORTHO05D006077 3.0e-94 350.1 480 42.3
C03p61260 Brassica napus HOM05D004947 ORTHO05D006077 3.0e-94 350.1 480 42.3
BolC3t18387H Brassica oleracea HOM05D004947 ORTHO05D006077 3.0e-94 350.1 480 42.3
MELO3C007803.2 Cucumis melo HOM05D004947 ORTHO05D006077 3.3e-93 346.7 502 43.8
ATR0171G039 Amborella trichopoda HOM05D004947 ORTHO05D006077 7.4e-93 345.5 531 40.9
VMungo1309G1623 Vigna mungo HOM05D004947 ORTHO05D006077 1.6e-92 344.4 416 52.4
AUR62016269 Chenopodium quinoa HOM05D004947 ORTHO05D006077 8.1e-92 342.0 421 48.2
CARHR293840 Cardamine hirsuta HOM05D004947 ORTHO05D006077 3.8e-89 333.2 482 41.9
BcaB02g09842 Brassica carinata HOM05D004947 ORTHO05D006077 4.9e-89 332.8 481 41.0
GSVIVG01022215001 Vitis vinifera HOM05D004947 ORTHO05D006077 1.9e-88 330.9 396 48.7
Os02g0770100 Oryza sativa ssp. japonica HOM05D004947 ORTHO05D006077 2.3e-86 323.9 498 39.2
AL8G42430 Arabidopsis lyrata HOM05D004947 ORTHO05D006077 3.0e-86 323.6 485 40.0
MELO3C007802.2 Cucumis melo HOM05D004947 ORTHO05D006077 3.0e-86 323.6 483 41.4
Zm00001eb364640 Zea mays HOM05D004947 ORTHO05D006077 3.3e-85 320.1 455 40.2
AT5G64930 Arabidopsis thaliana HOM05D004947 ORTHO05D006077 5.8e-82 309.3 518 37.8
Thhalv10003912m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 1.7e-81 307.8 494 40.1
Carub.0008s2576 Capsella rubella HOM05D004947 ORTHO05D006077 2.1e-79 300.8 495 37.4
QL93p0275_0011 Quercus lobata HOM05D004947 ORTHO05D006077 6.5e-73 279.3 313 50.8
BcaB04g20000 Brassica carinata HOM05D004947 ORTHO05D006077 1.9e-72 277.7 531 35.2
SalBow5G3891 Salvia bowleyana HOM05D004947 ORTHO05D006077 2.5e-69 267.3 237 57.0
CSS0010100 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 1.1e-64 251.9 351 45.9
Sabra05G0068700 Salix brachista HOM05D004947 ORTHO05D006077 5.5e-64 249.6 331 46.5
Potri.007G082100 Populus trichocarpa HOM05D004947 ORTHO05D006077 1.2e-63 248.4 326 49.1
FAN23G2837 Fragaria x ananassa HOM05D004947 ORTHO05D006077 9.7e-61 238.8 358 43.0
Thhalv10019768m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 2.4e-59 234.2 530 33.8
VMungo1309G0633 Vigna mungo HOM05D004947 ORTHO05D006077 3.2e-56 223.8 149 70.5
CSS0029975 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 2.1e-55 221.1 300 45.3
FvH4_1g22140 Fragaria vesca HOM05D004947 ORTHO05D006077 1.4e-54 218.4 323 41.5
Cpa.g.sc196.3 Carica papaya HOM05D004947 ORTHO05D006077 2.9e-49 200.7 175 57.7
Nn1g05196 Nelumbo nucifera HOM05D004947 ORTHO05D006077 2.7e-47 194.1 227 48.0
Thhalv10005311m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 6.1e-47 193.0 241 41.5
SEGI_09258 Sequoiadendron giganteum HOM05D004947 ORTHO05D006077 3.5e-42 177.2 240 38.8
Zm00001eb193490 Zea mays HOM05D004947 ORTHO05D006077 1.0e-41 175.6 377 32.4
Pp3c21_530 Physcomitrium patens HOM05D004947 ORTHO05D006077 8.0e-39 166.0 244 38.9
Mapoly0107s0002 Marchantia polymorpha HOM05D004947 ORTHO05D006077 3.0e-38 164.1 281 35.9
Mapoly0483s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 2.6e-37 161.0 281 35.2
AagrBONN_evm.TU.Sc2ySwM_228.3588 Anthoceros agrestis HOM05D004947 ORTHO05D006077 2.3e-33 147.9 299 33.1
Pp3c22_5670 Physcomitrium patens HOM05D004947 ORTHO05D006077 3.0e-30 137.5 213 37.6
Mapoly0002s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 1.2e-29 135.6 270 33.3
FAN28G0567 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.5e-29 135.2 160 46.2
CSS0006585 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 5.0e-25 120.2 95 55.8
CSS0047108 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 5.0e-25 120.2 95 55.8
CBR_g4593 Chara braunii HOM05D004947 ORTHO05D006077 9.5e-24 115.9 333 27.3
SGA_v2.0_scaffold47G17717 Striga asiatica HOM05D004947 ORTHO05D006077 1.6e-23 115.2 129 48.8
CBR_g49522 Chara braunii HOM05D000019 ORTHO05D000048 9.8e-21 105.9 256 28.9
Nn1g00055 Nelumbo nucifera HOM05D004947 ORTHO05D006077 1.1e-19 102.4 163 42.9
Nn5g28924 Nelumbo nucifera HOM05D004947 ORTHO05D006077 1.1e-19 102.4 149 40.9
BcaB02g07604 Brassica carinata HOM05D004947 ORTHO05D006077 3.7e-12 77.4 150 32.0
BcaC08g44843 Brassica carinata HOM05D004947 ORTHO05D006077 4.9e-12 77.0 145 32.4
C06p24500 Brassica napus HOM05D004947 ORTHO05D006077 4.9e-12 77.0 145 32.4
BolC6t37597H Brassica oleracea HOM05D004947 ORTHO05D006077 4.9e-12 77.0 145 32.4
A07p23420 Brassica napus HOM05D004947 ORTHO05D006077 6.0e-10 70.1 143 29.4
BraA07t30005Z Brassica rapa HOM05D004947 ORTHO05D006077 6.0e-10 70.1 143 29.4
MCO05G196 Micromonas commoda HOM05D004947 ORTHO05D006077 5.6e-08 63.5 291 23.7
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 9.5e-08 62.8 65 44.6


User provided reference genes

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