Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_16838_v3 Cicer arietinum L. HOM05D006277 ORTHO05D007673 3.1e-227 791.6 435 100.0
TPR.G35912 Trifolium pratense HOM05D006277 ORTHO05D007673 1.3e-161 573.5 435 73.6
Medtr3g093330 Medicago truncatula HOM05D006277 ORTHO05D007673 2.8e-151 539.3 436 72.2
Psat6g243000 Pisum sativum HOM05D006277 ORTHO05D007673 2.8e-143 512.7 436 68.3
Glyma.06G139100 Glycine max HOM05D006277 ORTHO05D007673 7.1e-139 498.0 435 67.4
Lj1g0014471 Lotus japonicus HOM05D006277 ORTHO05D007673 9.3e-139 497.7 436 68.6
Lalb_Chr23g0272041 Lupinus albus HOM05D006277 ORTHO05D007673 2.5e-131 473.0 436 64.2
Phvul.009G040200 Phaseolus vulgaris HOM05D006277 ORTHO05D007673 2.5e-128 463.0 442 63.6
VMungo1309G1324 Vigna mungo HOM05D006277 ORTHO05D007673 3.8e-124 449.1 440 63.4
arahy.Tifrunner.gnm1.ann1.YJ5L14 Arachis hypogaea HOM05D006277 ORTHO05D007673 2.8e-111 406.4 441 60.5
arahy.Tifrunner.gnm1.ann1.VE49IY Arachis hypogaea HOM05D006277 ORTHO05D007673 6.3e-111 405.2 441 59.2
arahy.Tifrunner.gnm1.ann1.NYS2P6 Arachis hypogaea HOM05D006277 ORTHO05D007673 8.2e-111 404.8 440 59.5
Glyma.04G225700 Glycine max HOM05D006277 ORTHO05D007673 2.2e-108 396.7 437 57.9
LjContig00312_ERROPOS870357g0003049 Lotus japonicus HOM05D006277 ORTHO05D007673 1.1e-107 394.4 307 73.9
QL09p006002 Quercus lobata HOM05D006277 ORTHO05D007673 2.7e-90 336.7 450 50.7
Dinv29192 Davidia involucrata HOM05D006277 ORTHO05D007673 2.4e-86 323.6 438 50.7
Gorai.004G126300 Gossypium raimondii HOM05D006277 ORTHO05D007673 1.7e-84 317.4 437 49.4
GSVIVG01038680001 Vitis vinifera HOM05D006277 ORTHO05D007673 1.5e-83 314.3 436 49.8
Gohir.A08G106400 Gossypium hirsutum HOM05D006277 ORTHO05D007673 5.5e-83 312.4 436 49.1
CiPaw.06G038300 Carya illinoinensis HOM05D006277 ORTHO05D007673 2.1e-82 310.5 380 53.7
Haze_00334 Corylus avellana HOM05D006277 ORTHO05D007673 6.8e-81 305.4 517 44.3
Thecc.03G212000 Theobroma cacao HOM05D006277 ORTHO05D007673 2.0e-77 293.9 437 48.1
Duzib205G1288 Durio zibethinus HOM05D006277 ORTHO05D007673 4.5e-77 292.7 437 49.0
COL.COLO4_14399 Corchorus olitorius HOM05D006277 ORTHO05D007673 1.7e-76 290.8 438 46.3
Sc19g0000370 Simmondsia chinensis HOM05D006277 ORTHO05D007673 3.8e-76 289.7 440 47.5
Atru.chr12.2501 Acer truncatum HOM05D006277 ORTHO05D007673 3.3e-75 286.6 444 48.0
RcHm_v2.0_Chr1g0383301 Rosa chinensis HOM05D006277 ORTHO05D007673 7.2e-75 285.4 450 47.6
Atru.chr12.2525 Acer truncatum HOM05D006277 ORTHO05D007673 6.1e-74 282.3 442 47.1
arahy.Tifrunner.gnm1.ann1.Z5WHM0 Arachis hypogaea HOM05D006277 ORTHO05D007673 2.3e-73 280.4 399 50.4
Potri.012G004700 Populus trichocarpa HOM05D006277 ORTHO05D007673 8.9e-73 278.5 436 45.9
PGR142G2769 Punica granatum HOM05D006277 ORTHO05D007673 3.4e-72 276.6 443 45.6
MD01G1231400 Malus domestica HOM05D006277 ORTHO05D007673 2.4e-70 270.4 306 55.2
MSTRG.26953 Avicennia marina HOM05D006277 ORTHO05D007673 1.6e-69 267.7 438 46.3
arahy.Tifrunner.gnm1.ann1.T9XRV5 Arachis hypogaea HOM05D006277 ORTHO05D007673 2.0e-69 267.3 287 59.9
CANSAT21G1902 Cannabis sativa HOM05D006277 ORTHO05D007673 4.6e-69 266.2 365 51.0
Sabra12G0000500 Salix brachista HOM05D006277 ORTHO05D007673 5.9e-69 265.8 439 44.2
Manes.18G108300 Manihot esculenta HOM05D006277 ORTHO05D007673 7.8e-69 265.4 448 46.7
Sabra12G0006800 Salix brachista HOM05D006277 ORTHO05D007673 1.0e-68 265.0 439 44.4
SalBow4G0692 Salvia bowleyana HOM05D006277 ORTHO05D007673 1.0e-68 265.0 437 45.5
PGSC0003DMG400000548 Solanum tuberosum HOM05D006277 ORTHO05D007673 3.9e-68 263.1 440 45.7
vmacro06474 Vaccinium macrocarpon HOM05D006277 ORTHO05D007673 3.9e-68 263.1 477 42.6
CAN.G303.58 Capsicum annuum HOM05D006277 ORTHO05D007673 5.0e-68 262.7 434 44.2
Hund09753 Selenicereus undatus HOM05D006277 ORTHO05D007673 5.0e-68 262.7 399 46.9
TWI59G0797 Tripterygium wilfordii HOM05D006277 ORTHO05D007673 5.0e-68 262.7 305 51.5
EL10Ac3g05132 Beta vulgaris HOM05D006277 ORTHO05D007673 1.1e-67 261.5 441 46.3
FAN01G0327 Fragaria x ananassa HOM05D006277 ORTHO05D007673 1.1e-67 261.5 443 44.9
FvH4_7g33320 Fragaria vesca HOM05D006277 ORTHO05D007673 3.3e-67 260.0 442 46.2
FAN10G3443 Fragaria x ananassa HOM05D006277 ORTHO05D007673 5.6e-67 259.2 442 45.9
Migut.F00123 Erythranthe guttata HOM05D006277 ORTHO05D007673 7.3e-67 258.8 440 44.1
Rhsim03G0218400 Rhododendron simsii HOM05D006277 ORTHO05D007673 1.2e-66 258.1 452 44.5
FAN10G1913 Fragaria x ananassa HOM05D006277 ORTHO05D007673 4.7e-66 256.1 442 45.5
Sopen03g027470 Solanum pennellii HOM05D006277 ORTHO05D007673 4.7e-66 256.1 443 44.5
Cfa016128 Carpinus fangiana HOM05D006277 ORTHO05D007673 6.1e-66 255.8 336 50.0
SGA_v2.0_scaffold18G08496 Striga asiatica HOM05D006277 ORTHO05D007673 3.7e-63 246.5 418 43.8
Nitab4.5_0000021g0190 Nicotiana tabacum HOM05D006277 ORTHO05D007673 4.1e-62 243.0 351 48.4
Sed0010003 Sechium edule HOM05D006277 ORTHO05D007673 4.1e-62 243.0 441 43.8
CSS0047728 Camellia sinensis var. sinensis HOM05D006277 ORTHO05D007673 9.2e-62 241.9 447 43.2
CsaV3_2G019700 Cucumis sativus L. HOM05D006277 ORTHO05D007673 2.0e-61 240.7 442 43.0
AUR62005949 Chenopodium quinoa HOM05D006277 ORTHO05D007673 2.7e-61 240.4 439 44.6
Nitab4.5_0007121g0020 Nicotiana tabacum HOM05D006277 ORTHO05D007673 3.5e-61 240.0 392 45.4
Cpa.g.sc3.186 Carica papaya HOM05D006277 ORTHO05D007673 4.6e-61 239.6 443 42.7
Solyc03g079950.4 Solanum lycopersicum HOM05D006277 ORTHO05D007673 7.8e-61 238.8 445 43.1
ClCG07G009750 Citrullus lanatus HOM05D006277 ORTHO05D007673 2.3e-60 237.3 440 44.1
MD07G1303400 Malus domestica HOM05D006277 ORTHO05D007673 6.6e-60 235.7 466 41.8
Prupe.2G322100 Prunus persica HOM05D006277 ORTHO05D007673 1.5e-59 234.6 322 51.2
Thhalv10004336m.g Eutrema salsugineum HOM05D006277 ORTHO05D007673 1.9e-59 234.2 448 44.4
Cc02_g00600 Coffea canephora HOM05D006277 ORTHO05D007673 3.3e-59 233.4 440 42.5
MELO3C023191.2 Cucumis melo HOM05D006277 ORTHO05D007673 2.1e-58 230.7 328 48.8
Eucgr.K00479 Eucalyptus grandis HOM05D006277 ORTHO05D007673 2.8e-58 230.3 373 44.8
HanXRQChr04g0117941 Helianthus annuus HOM05D006277 ORTHO05D007673 5.2e-57 226.1 188 67.0
TAR626G1328 Trochodendron aralioides HOM05D006277 ORTHO05D007673 6.8e-57 225.7 435 41.1
AUR62028116 Chenopodium quinoa HOM05D006277 ORTHO05D007673 1.2e-56 224.9 443 40.4
Ciclev10005393m.g Citrus clementina HOM05D006277 ORTHO05D007673 1.5e-56 224.6 309 50.2
Peaxi162Scf01026g00268 Petunia axillaris HOM05D006277 ORTHO05D007673 1.5e-56 224.6 441 41.5
THA.LOC104803317 Tarenaya hassleriana HOM05D006277 ORTHO05D007673 1.5e-56 224.6 451 42.8
Aa31LG11G3890 Aethionema arabicum HOM05D006277 ORTHO05D007673 2.6e-56 223.8 442 40.7
PSO063G0207 Papaver somniferum HOM05D006277 ORTHO05D007673 4.4e-56 223.0 206 62.1
PSO384G3009 Papaver somniferum HOM05D006277 ORTHO05D007673 5.8e-56 222.6 206 61.7
ECA238G0260 Erigeron canadensis HOM05D006277 ORTHO05D007673 3.7e-55 219.9 238 54.6
Sp2g22750 Schrenkiella parvula HOM05D006277 ORTHO05D007673 3.7e-55 219.9 445 43.6
PSO170G0956 Papaver somniferum HOM05D006277 ORTHO05D007673 1.9e-54 217.6 184 65.8
FAN03G1266 Fragaria x ananassa HOM05D006277 ORTHO05D007673 4.1e-54 216.5 361 45.4
BcaNung02006 Brassica carinata HOM05D006277 ORTHO05D007673 1.6e-53 214.5 449 40.3
AUR62030650 Chenopodium quinoa HOM05D006277 ORTHO05D007673 2.7e-53 213.8 208 61.5
Lsat_1_v5_gn_2_135460 Lactuca sativa HOM05D006277 ORTHO05D007673 3.5e-53 213.4 386 42.2
C07p43080 Brassica napus HOM05D006277 ORTHO05D007673 1.7e-52 211.1 463 41.3
BolC7t44835H Brassica oleracea HOM05D006277 ORTHO05D007673 2.3e-52 210.7 454 41.9
Gohir.D08G117800 Gossypium hirsutum HOM05D006277 ORTHO05D007673 1.1e-51 208.4 332 44.0
Carub.0006s2249 Capsella rubella HOM05D006277 ORTHO05D007673 5.6e-51 206.1 450 40.4
HPP92_017116 Vanilla planifolia HOM05D006277 ORTHO05D007673 8.1e-50 202.2 241 50.6
MBI16_g10337_MAGBIO Magnolia biondii HOM05D006277 ORTHO05D007673 2.0e-48 197.6 311 46.0
Ah.13g071040 Amaranthus hybridus HOM05D006277 ORTHO05D008078 3.4e-48 196.8 423 42.1
Oeu010718.2 Olea europaea HOM05D006277 ORTHO05D007673 3.4e-48 196.8 525 34.3
Aqoxy7G02781 Aquilegia oxysepala HOM05D006277 ORTHO05D007673 4.4e-48 196.4 357 41.5
CARHR188820 Cardamine hirsuta HOM05D006277 ORTHO05D007673 7.6e-48 195.7 436 42.0
A06p35430 Brassica napus HOM05D006277 ORTHO05D007673 1.3e-47 194.9 460 40.0
ATR0626G063 Amborella trichopoda HOM05D006277 ORTHO05D007673 2.2e-47 194.1 233 50.2
Os02g0147700 Oryza sativa ssp. japonica HOM05D006277 ORTHO05D007673 8.4e-47 192.2 400 39.5
AL6G36240 Arabidopsis lyrata HOM05D006277 ORTHO05D007673 1.9e-46 191.0 466 38.0
BraA06t26466Z Brassica rapa HOM05D006277 ORTHO05D007673 3.2e-46 190.3 470 39.1
BcaNung01248 Brassica carinata HOM05D006277 ORTHO05D007673 4.6e-45 186.4 453 39.1
HPP92_017121 Vanilla planifolia HOM05D006277 ORTHO05D007673 1.7e-44 184.5 199 51.8
Zm00001eb232230 Zea mays HOM05D006277 ORTHO05D007673 2.3e-44 184.1 265 46.4
AT5G24630 Arabidopsis thaliana HOM05D006277 ORTHO05D007673 3.0e-44 183.7 463 36.7
CDE02G3091 Ceratophyllum demersum HOM05D006277 ORTHO05D007673 5.1e-44 183.0 228 51.3
Os02g0147100 Oryza sativa ssp. japonica HOM05D006277 ORTHO05D007673 4.3e-43 179.9 387 38.8
Actinidia08720 Actinidia chinensis HOM05D006277 ORTHO05D007673 1.2e-42 178.3 333 41.1
SEGI_26440 Sequoiadendron giganteum HOM05D006277 ORTHO05D007673 1.8e-41 174.5 442 34.8
PSO384G0555 Papaver somniferum HOM05D006277 ORTHO05D007673 6.8e-41 172.6 157 63.7
DCAR_010558 Daucus carota HOM05D006277 ORTHO05D007673 2.4e-38 164.1 457 37.0
BolC9t53629H Brassica oleracea HOM05D003313 ORTHO05D004217 6.0e-37 159.5 167 58.1
BraA09t36286Z Brassica rapa HOM05D000010 ORTHO05D000063 2.0e-32 144.4 231 44.2
A09p06430 Brassica napus HOM05D000010 ORTHO05D000063 2.6e-32 144.1 195 50.8
Pp3c7_3940 Physcomitrium patens HOM05D006277 ORTHO05D007673 2.6e-32 144.1 206 46.1
Nn7g37003 Nelumbo nucifera HOM05D006277 ORTHO05D007673 1.9e-30 137.9 216 43.5
Mapoly0143s0029 Marchantia polymorpha HOM05D006277 ORTHO05D007673 2.1e-29 134.4 464 31.9
Pp3c11_21910 Physcomitrium patens HOM05D006277 ORTHO05D007673 2.7e-29 134.0 218 41.3
AagrBONN_evm.TU.Sc2ySwM_362.1883 Anthoceros agrestis HOM05D006277 ORTHO05D007673 4.6e-29 133.3 217 42.9
Potri.015G000701 Populus trichocarpa HOM05D006277 ORTHO05D007673 8.7e-28 129.0 102 66.7
C09p07160 Brassica napus HOM05D000010 ORTHO05D000063 7.3e-27 125.9 409 33.7
CBR_g24064 Chara braunii HOM05D006277 ORTHO05D007673 5.3e-25 119.8 253 37.5
CBR_g39579 Chara braunii HOM05D000601 ORTHO05D007673 1.3e-20 105.1 110 48.2
CDE06G1557 Ceratophyllum demersum HOM05D006277 ORTHO05D007673 1.8e-20 104.8 132 50.0
CBR_g31160 Chara braunii HOM05D006277 ORTHO05D007673 4.3e-19 100.1 151 41.7
CiPaw.10G123600 Carya illinoinensis HOM05D006277 ORTHO05D007673 6.5e-15 86.3 71 70.4
Nn5g26949 Nelumbo nucifera HOM05D006277 ORTHO05D007673 7.4e-11 72.8 50 68.0
MCO04G384 Micromonas commoda HOM05D006277 ORTHO05D007673 3.7e-10 70.5 126 34.1
Glyma.03G049200 Glycine max HOM05D006277 ORTHO05D007673 3.4e-08 63.9 53 71.7
Hma1.2p1_1235F.1_g269240 Hydrangea macrophylla HOM05D006277 ORTHO05D007673 9.3e-06 55.8 196 33.7


User provided reference genes

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