Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_16614_v3 Cicer arietinum L. HOM05D004195 ORTHO05D005309 0.0e+00 1111.7 549 100.0
Medtr3g088650 Medicago truncatula HOM05D004195 ORTHO05D005309 5.0e-307 1057.0 547 94.3
Psat5g084360 Pisum sativum HOM05D004195 ORTHO05D005309 2.5e-306 1054.7 546 94.7
TPR.G6326 Trifolium pratense HOM05D004195 ORTHO05D005309 4.7e-297 1023.8 545 91.7
Phvul.009G130500 Phaseolus vulgaris HOM05D004195 ORTHO05D005309 7.0e-293 1010.0 546 90.1
VMungo1309G1545 Vigna mungo HOM05D004195 ORTHO05D005309 1.6e-292 1008.8 546 89.7
Glyma.04G245100 Glycine max HOM05D004195 ORTHO05D005309 7.8e-292 1006.5 546 90.3
Lj1g0006497 Lotus japonicus HOM05D004195 ORTHO05D005309 1.3e-291 1005.7 547 89.8
Lalb_Chr23g0271201 Lupinus albus HOM05D004195 ORTHO05D005309 9.5e-290 999.6 546 88.6
arahy.Tifrunner.gnm1.ann1.8W34DS Arachis hypogaea HOM05D004195 ORTHO05D005309 4.1e-285 984.2 546 87.5
arahy.Tifrunner.gnm1.ann1.MX6LT2 Arachis hypogaea HOM05D004195 ORTHO05D005309 2.3e-283 978.4 553 86.4
arahy.Tifrunner.gnm1.ann1.TVXF2I Arachis hypogaea HOM05D004195 ORTHO05D005309 2.3e-283 978.4 553 86.4
Manes.18G083251 Manihot esculenta HOM05D004195 ORTHO05D005309 4.1e-269 931.0 547 82.3
CsaV3_6G034020 Cucumis sativus L. HOM05D004195 ORTHO05D005309 1.9e-266 922.2 546 81.7
Sed0021205 Sechium edule HOM05D004195 ORTHO05D005309 3.3e-266 921.4 545 80.9
MELO3C008467.2 Cucumis melo HOM05D004195 ORTHO05D005309 4.3e-266 921.0 546 81.3
MD15G1133100 Malus domestica HOM05D004195 ORTHO05D005309 3.1e-264 914.8 549 80.7
Thecc.08G133900 Theobroma cacao HOM05D004195 ORTHO05D005309 3.1e-264 914.8 547 81.4
Gohir.A08G221616 Gossypium hirsutum HOM05D004195 ORTHO05D005309 5.2e-264 914.1 547 81.0
Ciclev10000592m.g Citrus clementina HOM05D004195 ORTHO05D005309 1.2e-263 912.9 549 80.5
Peaxi162Scf00946g00016 Petunia axillaris HOM05D004195 ORTHO05D005309 1.5e-263 912.5 549 79.4
Peaxi162Scf00066g00527 Petunia axillaris HOM05D004195 ORTHO05D005309 5.8e-263 910.6 548 79.9
ClCG08G006050 Citrullus lanatus HOM05D004195 ORTHO05D005309 2.2e-262 908.7 547 80.8
Gorai.004G254500 Gossypium raimondii HOM05D004195 ORTHO05D005309 2.9e-262 908.3 547 80.6
Nn5g28450 Nelumbo nucifera HOM05D004195 ORTHO05D005309 3.8e-262 907.9 535 80.6
Nitab4.5_0000317g0080 Nicotiana tabacum HOM05D004195 ORTHO05D005309 3.8e-262 907.9 549 79.6
Potri.002G077400 Populus trichocarpa HOM05D004195 ORTHO05D005309 4.9e-262 907.5 547 79.9
Prupe.1G488700 Prunus persica HOM05D004195 ORTHO05D005309 4.9e-262 907.5 548 80.1
TAR625G0293 Trochodendron aralioides HOM05D004195 ORTHO05D005309 4.9e-262 907.5 549 78.9
CiPaw.15G030800 Carya illinoinensis HOM05D004195 ORTHO05D005309 6.4e-262 907.1 549 80.0
SalBow7G3728 Salvia bowleyana HOM05D004195 ORTHO05D005309 6.4e-262 907.1 549 79.6
PGSC0003DMG400023024 Solanum tuberosum HOM05D004195 ORTHO05D005309 6.4e-262 907.1 549 79.1
TWI34G0939 Tripterygium wilfordii HOM05D004195 ORTHO05D005309 6.4e-262 907.1 547 80.3
TWI60G0549 Tripterygium wilfordii HOM05D004195 ORTHO05D005309 1.4e-261 906.0 549 80.0
RcHm_v2.0_Chr6g0296821 Rosa chinensis HOM05D004195 ORTHO05D005309 2.4e-261 905.2 547 79.5
Cfa018421 Carpinus fangiana HOM05D004195 ORTHO05D005309 3.2e-261 904.8 549 79.4
FAN20G1489 Fragaria x ananassa HOM05D004195 ORTHO05D005309 3.2e-261 904.8 549 79.8
FvH4_2g28000 Fragaria vesca HOM05D004195 ORTHO05D005309 5.4e-261 904.0 548 80.1
Sabra02G0060800 Salix brachista HOM05D004195 ORTHO05D005309 9.3e-261 903.3 547 80.1
Sopen04g025940 Solanum pennellii HOM05D004195 ORTHO05D005309 1.2e-260 902.9 547 78.8
Solyc04g058070.3 Solanum lycopersicum HOM05D004195 ORTHO05D005309 1.6e-260 902.5 547 78.8
CANSAT25G3797 Cannabis sativa HOM05D004195 ORTHO05D005309 2.7e-260 901.7 548 79.2
THA.LOC104808371 Tarenaya hassleriana HOM05D004195 ORTHO05D000001 2.7e-260 901.7 546 80.0
Atru.chr13.1591 Acer truncatum HOM05D004195 ORTHO05D005309 3.5e-260 901.4 548 78.8
Actinidia15207 Actinidia chinensis HOM05D004195 ORTHO05D005309 6.0e-260 900.6 549 78.5
PGR042G0897 Punica granatum HOM05D004195 ORTHO05D005309 1.0e-259 899.8 547 79.5
Rhsim11G0072300 Rhododendron simsii HOM05D004195 ORTHO05D005309 2.3e-259 898.7 598 74.7
Aqoxy6G00296 Aquilegia oxysepala HOM05D004195 ORTHO05D005309 3.0e-259 898.3 561 78.1
TAR381G1357 Trochodendron aralioides HOM05D004195 ORTHO05D005309 8.7e-259 896.7 549 78.5
CAN.G405.5 Capsicum annuum HOM05D004195 ORTHO05D005309 7.3e-258 893.6 551 77.9
PSO724G0104 Papaver somniferum HOM05D004195 ORTHO05D005309 7.3e-258 893.6 548 78.6
PSO729G0087 Papaver somniferum HOM05D004195 ORTHO05D005309 7.3e-258 893.6 548 78.8
Aa31LG9G14170 Aethionema arabicum HOM05D004195 ORTHO05D005309 2.1e-257 892.1 549 78.1
CSS0005980 Camellia sinensis var. sinensis HOM05D004195 ORTHO05D005309 2.8e-257 891.7 547 77.9
Lj7C351T8 Lonicera japonica HOM05D004195 ORTHO05D005309 2.8e-257 891.7 547 77.7
Actinidia21272 Actinidia chinensis HOM05D004195 ORTHO05D005309 8.1e-257 890.2 549 78.3
MSTRG.25350 Avicennia marina HOM05D004195 ORTHO05D005309 8.1e-257 890.2 549 77.0
Sp4g04790 Schrenkiella parvula HOM05D004195 ORTHO05D005309 8.1e-257 890.2 550 79.3
CiPaw.16G022400 Carya illinoinensis HOM05D004195 ORTHO05D005309 2.4e-256 888.6 549 78.3
HanXRQChr02g0055521 Helianthus annuus HOM05D004195 ORTHO05D005309 5.3e-256 887.5 547 77.7
Eucgr.F03856 Eucalyptus grandis HOM05D004195 ORTHO05D005309 9.0e-256 886.7 544 78.7
AT5G52560 Arabidopsis thaliana HOM05D004195 ORTHO05D005309 1.2e-255 886.3 547 78.6
EL10Ac1g01366 Beta vulgaris HOM05D004195 ORTHO05D005309 1.2e-255 886.3 547 78.2
Gohir.D03G063000 Gossypium hirsutum HOM05D004195 ORTHO05D005309 1.5e-255 885.9 548 79.4
Gorai.013G108400 Gossypium raimondii HOM05D004195 ORTHO05D005309 1.5e-255 885.9 548 79.6
AUR62007701 Chenopodium quinoa HOM05D004195 ORTHO05D005309 2.0e-255 885.6 547 77.7
AL8G27030 Arabidopsis lyrata HOM05D004195 ORTHO05D005309 2.6e-255 885.2 547 78.4
Sc26g0002830 Simmondsia chinensis HOM05D004195 ORTHO05D005309 4.5e-255 884.4 547 77.7
FAN27G3503 Fragaria x ananassa HOM05D004195 ORTHO05D005309 7.6e-255 883.6 587 74.6
Hund17352 Selenicereus undatus HOM05D004195 ORTHO05D005309 1.7e-254 882.5 566 76.5
FAN24G0605 Fragaria x ananassa HOM05D004195 ORTHO05D005309 2.2e-254 882.1 587 74.8
HanXRQChr14g0452241 Helianthus annuus HOM05D004195 ORTHO05D005309 2.2e-254 882.1 547 77.5
DCAR_003592 Daucus carota HOM05D004195 ORTHO05D005309 8.4e-254 880.2 564 75.9
CARHR265560 Cardamine hirsuta HOM05D004195 ORTHO05D005309 1.4e-253 879.4 549 77.6
Cc10_g13640 Coffea canephora HOM05D004195 ORTHO05D005309 1.4e-253 879.4 547 76.8
Carub.0008s1270 Capsella rubella HOM05D004195 ORTHO05D005309 2.4e-253 878.6 547 77.5
SGA_v2.0_scaffold7G03728 Striga asiatica HOM05D004195 ORTHO05D005309 2.4e-253 878.6 549 77.2
A09p55650 Brassica napus HOM05D004195 ORTHO05D005309 3.2e-253 878.2 550 78.0
C08p38640 Brassica napus HOM05D004195 ORTHO05D005309 3.2e-253 878.2 550 78.0
BraA09t40966Z Brassica rapa HOM05D004195 ORTHO05D005309 4.2e-253 877.9 550 78.0
Gohir.A10G100400 Gossypium hirsutum HOM05D004195 ORTHO05D005309 7.1e-253 877.1 545 78.3
BcaB08g35185 Brassica carinata HOM05D004195 ORTHO05D005309 9.3e-253 876.7 550 78.2
Lsat_1_v5_gn_2_99200 Lactuca sativa HOM05D004195 ORTHO05D005309 9.3e-253 876.7 547 76.8
BcaC07g40866 Brassica carinata HOM05D004195 ORTHO05D005309 1.6e-252 875.9 550 78.0
BolC8t51435H Brassica oleracea HOM05D004195 ORTHO05D005309 1.6e-252 875.9 550 78.0
Migut.C01079 Erythranthe guttata HOM05D004195 ORTHO05D005309 1.6e-252 875.9 549 75.4
Oeu045951.3 Olea europaea HOM05D004195 ORTHO05D005309 2.1e-252 875.5 573 74.0
FAN15G2696 Fragaria x ananassa HOM05D004195 ORTHO05D005309 3.5e-252 874.8 587 74.1
GSVIVG01008799001 Vitis vinifera HOM05D004195 ORTHO05D005309 3.9e-251 871.3 576 73.3
SGA_v2.0_scaffold52G18908 Striga asiatica HOM05D004195 ORTHO05D005309 5.1e-251 870.9 548 77.2
PSO541G1755 Papaver somniferum HOM05D004195 ORTHO05D005309 6.7e-251 870.5 548 76.8
unitig_748.g7692 Utricularia gibba HOM05D004195 ORTHO05D005309 1.5e-250 869.4 549 76.3
ECA238G0374 Erigeron canadensis HOM05D004195 ORTHO05D005309 9.6e-250 866.7 547 76.1
MSTRG.1402 Avicennia marina HOM05D004195 ORTHO05D005309 1.8e-248 862.4 547 76.2
Zm00001eb226930 Zea mays HOM05D004195 ORTHO05D005309 4.0e-248 861.3 543 75.7
HPP92_005775 Vanilla planifolia HOM05D004195 ORTHO05D005309 1.7e-246 855.9 539 76.4
Glyma.06G118100 Glycine max HOM05D004195 ORTHO05D005309 4.9e-246 854.4 465 89.5
ECA233G3807 Erigeron canadensis HOM05D004195 ORTHO05D005309 1.1e-245 853.2 552 75.0
Nitab4.5_0002557g0050 Nicotiana tabacum HOM05D004195 ORTHO05D005309 1.1e-245 853.2 549 76.1
Os06g0701200 Oryza sativa ssp. japonica HOM05D004195 ORTHO05D005309 2.4e-245 852.0 547 75.1
Thhalv10000457m.g Eutrema salsugineum HOM05D004195 ORTHO05D005309 6.0e-244 847.4 549 77.0
ATR1001G002 Amborella trichopoda HOM05D004195 ORTHO05D005309 4.3e-242 841.3 547 74.2
vmacro00869 Vaccinium macrocarpon HOM05D004195 ORTHO05D005309 5.8e-239 830.9 505 79.8
SEGI_41147 Sequoiadendron giganteum HOM05D004195 ORTHO05D005309 7.6e-239 830.5 548 73.5
HPP92_009336 Vanilla planifolia HOM05D004195 ORTHO05D005309 1.1e-237 826.6 548 72.6
Gohir.A05G238300 Gossypium hirsutum HOM05D004195 ORTHO05D005309 1.2e-236 823.2 554 74.0
CDE07G0325 Ceratophyllum demersum HOM05D004195 ORTHO05D005309 2.1e-236 822.4 547 72.8
Dinv14704 Davidia involucrata HOM05D004195 ORTHO05D005309 1.3e-235 819.7 555 73.5
Oeu047171.1 Olea europaea HOM05D004195 ORTHO05D005309 1.1e-229 800.0 532 72.7
PSO675G4690 Papaver somniferum HOM05D004195 ORTHO05D005309 3.9e-227 791.6 530 72.8
Cpa.g.sc64.151 Carica papaya HOM05D004195 ORTHO05D005309 2.2e-225 785.8 461 83.3
HPP92_005816 Vanilla planifolia HOM05D004195 ORTHO05D005309 1.2e-223 780.0 542 70.8
Hma1.2p1_0880F.1_g231850 Hydrangea macrophylla HOM05D004195 ORTHO05D005309 1.5e-223 779.6 467 79.9
SMO144G0039 Selaginella moellendorffii HOM05D004195 ORTHO05D005309 2.6e-223 778.9 531 70.2
Haze_17642 Corylus avellana HOM05D004195 ORTHO05D005309 5.5e-221 771.2 566 68.9
BcaB08g36106 Brassica carinata HOM05D004195 ORTHO05D005309 1.1e-218 763.5 539 72.4
SHI09238 Sapria himalayana HOM05D004195 ORTHO05D005309 1.4e-216 756.5 569 67.5
Mapoly0020s0171 Marchantia polymorpha HOM05D004195 ORTHO05D005309 1.8e-216 756.1 544 67.5
Ah.04g163390 Amaranthus hybridus HOM05D004195 ORTHO05D005309 9.4e-213 743.8 460 78.5
Lj4C664G15 Lonicera japonica HOM05D004195 ORTHO05D005309 2.7e-212 742.3 532 69.7
Pp3c14_26160 Physcomitrium patens HOM05D004195 ORTHO05D005309 2.7e-212 742.3 537 65.7
Duzib093G0036 Durio zibethinus HOM05D004195 ORTHO05D005309 8.0e-196 687.6 907 45.4
CBR_g38016 Chara braunii HOM05D004195 ORTHO05D005309 5.5e-189 664.8 552 62.0
AUR62013440 Chenopodium quinoa HOM05D004195 ORTHO05D005309 1.4e-184 650.2 389 78.7
Gohir.A02G111000 Gossypium hirsutum HOM05D004195 ORTHO05D005309 1.6e-183 646.7 369 83.7
Lj4A674G55 Lonicera japonica HOM05D004195 ORTHO05D005309 3.5e-183 645.6 532 62.2
Cre14.g621751 Chlamydomonas reinhardtii HOM05D004195 ORTHO05D005309 1.3e-174 617.1 555 58.2
MCO16G082 Micromonas commoda HOM05D004195 ORTHO05D005309 2.6e-170 602.8 548 55.1
AagrBONN_evm.TU.Sc2ySwM_228.475 Anthoceros agrestis HOM05D004195 ORTHO05D005309 8.1e-156 554.7 382 69.4
PRCOL_00000078 Prasinoderma coloniale HOM05D004195 ORTHO05D005309 2.9e-153 546.2 549 52.6
SEGI_17681 Sequoiadendron giganteum HOM05D004195 ORTHO05D005309 1.7e-150 537.0 362 72.7
MBI19_g18107_MAGBIO Magnolia biondii HOM05D004195 ORTHO05D005309 4.6e-143 512.3 460 60.0
Dinv27262 Davidia involucrata HOM05D004195 ORTHO05D005309 5.8e-138 495.4 283 82.3
Zm00001eb272890 Zea mays HOM05D004195 ORTHO05D005309 2.2e-137 493.4 288 80.2
Gorai.005G087200 Gossypium raimondii HOM05D004195 ORTHO05D005309 1.4e-136 490.7 470 58.3
Manes.02G169300 Manihot esculenta HOM05D004195 ORTHO05D005309 6.4e-129 465.3 303 75.2
Pp3c7_22840 Physcomitrium patens HOM05D004195 ORTHO05D005309 5.1e-110 402.5 533 42.6
CDE06G1518 Ceratophyllum demersum HOM05D004195 ORTHO05D005309 3.9e-102 376.3 283 65.7
Zm00001eb215830 Zea mays HOM05D004195 ORTHO05D005309 7.0e-99 365.5 218 79.4
CDE06G0343 Ceratophyllum demersum HOM05D004195 ORTHO05D005309 9.1e-99 365.2 229 74.7
Sed0024885 Sechium edule HOM05D004195 ORTHO05D005309 9.1e-99 365.2 231 75.8
HPP92_005823 Vanilla planifolia HOM05D004195 ORTHO05D005309 9.1e-99 365.2 269 66.9
Gohir.D02G077650 Gossypium hirsutum HOM05D004195 ORTHO05D005309 1.4e-91 341.3 369 54.5
Duzib116G0462 Durio zibethinus HOM05D004195 ORTHO05D005309 5.4e-75 286.2 376 45.7
Zm00001eb237030 Zea mays HOM05D004195 ORTHO05D005309 5.7e-69 266.2 151 83.4
AUR62013439 Chenopodium quinoa HOM05D004195 ORTHO05D005309 1.3e-65 255.0 167 75.4
Dinv27263 Davidia involucrata HOM05D004195 ORTHO05D005309 7.3e-64 249.2 174 69.5
Sopen04g025970 Solanum pennellii HOM05D004195 ORTHO05D005309 2.1e-63 247.7 161 73.9
HPP92_009371 Vanilla planifolia HOM05D004195 ORTHO05D005309 3.6e-47 193.7 127 70.1
Sed0012376 Sechium edule HOM05D004195 ORTHO05D005309 9.2e-43 179.1 122 74.6
Lsat_1_v5_gn_6_45121 Lactuca sativa HOM05D004195 ORTHO05D035846 1.0e-41 175.6 252 42.1
Lsat_1_v5_gn_6_43121 Lactuca sativa HOM05D004195 ORTHO05D005309 3.9e-41 173.7 242 43.8
Lsat_1_v5_gn_6_43041 Lactuca sativa HOM05D004195 ORTHO05D035846 5.4e-35 153.3 399 29.3
VMungo0720G0521 Vigna mungo HOM05D000196 ORTHO05D000279 3.3e-32 144.1 86 77.9
Ah.04g163400 Amaranthus hybridus HOM05D004195 ORTHO05D005309 2.4e-27 127.9 83 71.1
Cpa.g.c44850 Carica papaya HOM05D004195 ORTHO05D005309 3.5e-26 124.0 88 67.0
Gohir.D08G239084 Gossypium hirsutum HOM05D004195 ORTHO05D005309 3.5e-26 124.0 88 69.3
FAN15G2766 Fragaria x ananassa HOM05D004195 ORTHO05D005309 1.4e-22 112.1 70 70.0
Hund26746 Selenicereus undatus HOM05D004195 ORTHO05D005309 6.9e-22 109.8 91 59.3
QL10p065861 Quercus lobata HOM05D001716 ORTHO05D004234 1.2e-21 109.0 56 91.1
vmacro11216 Vaccinium macrocarpon HOM05D004195 ORTHO05D050721 5.8e-21 106.7 73 69.9
Duzib213G0704 Durio zibethinus HOM05D004195 ORTHO05D005309 3.8e-20 104.0 77 62.3
Hma1.2p1_0349F.1_g132280 Hydrangea macrophylla HOM05D004195 ORTHO05D005309 1.0e-17 95.9 69 59.4
CBR_g45707 Chara braunii HOM05D003927 ORTHO05D004905 3.9e-17 94.0 231 30.3
CANSAT54G2179 Cannabis sativa HOM05D005470 ORTHO05D006855 7.4e-16 89.7 50 84.0
Os08g0206900 Oryza sativa ssp. japonica HOM05D003927 ORTHO05D004905 1.4e-14 85.5 234 29.9
Zm00001eb430780 Zea mays HOM05D003927 ORTHO05D004905 1.4e-14 85.5 322 29.2
Zm00001eb070940 Zea mays HOM05D003927 ORTHO05D004905 2.4e-14 84.7 321 28.3
Haze_26176 Corylus avellana HOM05D003927 ORTHO05D004905 5.3e-14 83.6 289 24.9
AagrBONN_evm.TU.Sc2ySwM_228.1844 Anthoceros agrestis HOM05D007300 ORTHO05D004905 6.9e-14 83.2 195 27.7
PGR004G1431 Punica granatum HOM05D003927 ORTHO05D004905 6.9e-14 83.2 238 29.4
Pp3c15_14250 Physcomitrium patens HOM05D007300 ORTHO05D009301 2.0e-13 81.6 317 22.1
BolC8t48168H Brassica oleracea HOM05D003927 ORTHO05D004905 4.5e-13 80.5 235 28.9
Mapoly0019s0078 Marchantia polymorpha HOM05D007300 ORTHO05D009301 1.0e-12 79.3 206 25.7
PRCOL_00005739 Prasinoderma coloniale HOM05D003927 ORTHO05D004905 4.9e-12 77.0 317 22.7
Hma1.2p1_2689F.1_g326990 Hydrangea macrophylla HOM05D004195 ORTHO05D005309 1.4e-11 75.5 58 58.6
FAN26G1170 Fragaria x ananassa HOM05D004195 ORTHO05D035846 2.5e-11 74.7 37 86.5
Gohir.D07G155733 Gossypium hirsutum HOM05D004195 ORTHO05D217344 4.2e-11 73.9 42 78.6
RcHm_v2.0_Chr3g0470721 Rosa chinensis HOM05D004195 ORTHO05D050721 2.1e-10 71.6 39 84.6
AL4G19510 Arabidopsis lyrata HOM05D002764 ORTHO05D002960 5.7e-08 63.5 40 72.5
MBI11_g47560_MAGBIO Magnolia biondii HOM05D002408 ORTHO05D002534 5.7e-08 63.5 72 48.6
QL05p063882 Quercus lobata HOM05D001716 ORTHO05D004234 1.3e-07 62.4 35 80.0
HPP92_005821 Vanilla planifolia HOM05D004195 ORTHO05D429708 4.8e-07 60.5 105 38.1
Lsat_1_v5_gn_9_125000 Lactuca sativa HOM05D004195 ORTHO05D005309 6.3e-07 60.1 40 65.0
Lsat_1_v5_gn_3_55481 Lactuca sativa HOM05D002352 ORTHO05D011576 5.3e-06 57.0 32 71.9


User provided reference genes

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