Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_16545_v3 Cicer arietinum L. HOM05D006521 ORTHO05D008087 1.4e-204 716.1 360 100.0
Medtr3g087760 Medicago truncatula HOM05D006521 ORTHO05D008087 5.8e-187 657.5 360 90.6
Psat5g088760 Pisum sativum HOM05D006521 ORTHO05D008087 4.2e-185 651.4 365 90.1
TPR.G22881 Trifolium pratense HOM05D006521 ORTHO05D008087 6.6e-183 644.0 388 84.3
Lj6g0010661 Lotus japonicus HOM05D006521 ORTHO05D008087 4.9e-178 627.9 360 86.7
Glyma.18G019200 Glycine max HOM05D006521 ORTHO05D008087 3.1e-172 608.6 361 83.7
Phvul.001G250400 Phaseolus vulgaris HOM05D006521 ORTHO05D008087 9.0e-172 607.1 362 84.3
VMungo1383G3636 Vigna mungo HOM05D006521 ORTHO05D008087 9.0e-172 607.1 362 83.7
Glyma.11G238100 Glycine max HOM05D006521 ORTHO05D008087 2.7e-168 595.5 362 82.3
Lalb_Chr11g0075241 Lupinus albus HOM05D006521 ORTHO05D008087 1.9e-166 589.3 366 81.4
arahy.Tifrunner.gnm1.ann1.2NAN3W Arachis hypogaea HOM05D006521 ORTHO05D008087 1.3e-165 586.6 372 79.3
arahy.Tifrunner.gnm1.ann1.IK9JFE Arachis hypogaea HOM05D006521 ORTHO05D008087 6.2e-165 584.3 372 79.6
ClCG01G018970 Citrullus lanatus HOM05D006521 ORTHO05D008087 4.2e-153 545.0 353 75.6
MELO3C007776.2 Cucumis melo HOM05D006521 ORTHO05D008087 7.2e-153 544.3 353 75.6
CANSAT01G1058 Cannabis sativa HOM05D006521 ORTHO05D008087 5.1e-151 538.1 356 75.8
CsaV3_6G045650 Cucumis sativus L. HOM05D006521 ORTHO05D008087 2.5e-150 535.8 353 74.8
Thecc.01G106200 Theobroma cacao HOM05D006521 ORTHO05D008087 2.9e-146 522.3 368 70.1
Duzib147G0857 Durio zibethinus HOM05D006521 ORTHO05D008087 6.5e-146 521.2 368 70.1
Sed0002886 Sechium edule HOM05D006521 ORTHO05D008087 1.9e-145 519.6 351 71.8
Manes.12G138400 Manihot esculenta HOM05D006521 ORTHO05D008087 5.5e-145 518.1 372 70.7
Sed0013283 Sechium edule HOM05D006521 ORTHO05D008087 7.2e-145 517.7 362 71.5
TWI74G1358 Tripterygium wilfordii HOM05D006521 ORTHO05D008087 2.7e-144 515.8 360 71.9
Cpa.g.sc20.228 Carica papaya HOM05D006521 ORTHO05D008087 3.9e-143 511.9 363 68.9
THA.LOC104824871 Tarenaya hassleriana HOM05D006521 ORTHO05D008087 8.8e-143 510.8 361 69.0
Prupe.3G102100 Prunus persica HOM05D006521 ORTHO05D008087 1.5e-142 510.0 350 73.4
TAR376G0467 Trochodendron aralioides HOM05D006521 ORTHO05D008087 2.0e-142 509.6 358 69.8
THA.LOC104807700 Tarenaya hassleriana HOM05D006521 ORTHO05D008087 5.7e-142 508.1 346 70.2
TWI77G0511 Tripterygium wilfordii HOM05D006521 ORTHO05D008087 2.2e-141 506.1 358 70.4
Atru.chr4.229 Acer truncatum HOM05D006521 ORTHO05D008087 3.7e-141 505.4 359 69.9
Carub.0007s0173 Capsella rubella HOM05D006521 ORTHO05D008087 8.2e-141 504.2 347 68.6
Gorai.007G061700 Gossypium raimondii HOM05D006521 ORTHO05D008087 7.0e-140 501.1 365 66.0
Eucgr.I00394 Eucalyptus grandis HOM05D006521 ORTHO05D008087 9.1e-140 500.7 359 69.1
Hma1.2p1_0011F.1_g007170 Hydrangea macrophylla HOM05D006521 ORTHO05D008087 1.5e-139 500.0 370 68.6
AT4G39820 Arabidopsis thaliana HOM05D006521 ORTHO05D008087 2.0e-139 499.6 347 68.0
Thhalv10025314m.g Eutrema salsugineum HOM05D006521 ORTHO05D008087 2.0e-139 499.6 365 66.6
RcHm_v2.0_Chr2g0115391 Rosa chinensis HOM05D006521 ORTHO05D008087 7.7e-139 497.7 365 70.1
Duzib264G0874 Durio zibethinus HOM05D006521 ORTHO05D008087 1.0e-138 497.3 357 68.1
QL06p050323 Quercus lobata HOM05D006521 ORTHO05D008087 1.3e-138 496.9 356 69.4
Aa31LG6G15450 Aethionema arabicum HOM05D006521 ORTHO05D008087 1.7e-138 496.5 347 67.7
AL7G12040 Arabidopsis lyrata HOM05D006521 ORTHO05D008087 3.8e-138 495.4 347 67.4
Ciclev10025891m.g Citrus clementina HOM05D006521 ORTHO05D008087 3.8e-138 495.4 355 70.1
Gorai.008G103700 Gossypium raimondii HOM05D006521 ORTHO05D008087 3.8e-138 495.4 356 68.3
CARHR246880 Cardamine hirsuta HOM05D006521 ORTHO05D008087 6.5e-138 494.6 347 67.1
PGR004G2411 Punica granatum HOM05D006521 ORTHO05D008087 6.5e-138 494.6 363 68.3
Sp7g36070 Schrenkiella parvula HOM05D006521 ORTHO05D008087 6.5e-138 494.6 345 67.0
Dinv16313 Davidia involucrata HOM05D006521 ORTHO05D008087 1.5e-137 493.4 354 69.2
Dinv00937 Davidia involucrata HOM05D006521 ORTHO05D008087 1.9e-137 493.0 354 69.2
FAN28G0591 Fragaria x ananassa HOM05D006521 ORTHO05D008087 7.2e-137 491.1 365 70.7
Aqoxy5G01962 Aquilegia oxysepala HOM05D006521 ORTHO05D008087 6.1e-136 488.0 355 67.6
PSO447G0171 Papaver somniferum HOM05D006521 ORTHO05D008087 6.1e-136 488.0 357 66.9
BolC3t20094H Brassica oleracea HOM05D006521 ORTHO05D008087 1.8e-135 486.5 357 65.0
Potri.005G079300 Populus trichocarpa HOM05D006521 ORTHO05D008087 1.8e-135 486.5 368 68.2
C03p78340 Brassica napus HOM05D006521 ORTHO05D008087 5.2e-135 485.0 344 66.0
FAN19G2752 Fragaria x ananassa HOM05D006521 ORTHO05D008087 6.7e-135 484.6 365 69.3
PSO210G2459 Papaver somniferum HOM05D006521 ORTHO05D008087 8.8e-135 484.2 357 66.1
FvH4_1g21530 Fragaria vesca HOM05D006521 ORTHO05D008087 2.0e-134 483.0 365 69.0
A08p23330 Brassica napus HOM05D006521 ORTHO05D008087 4.4e-134 481.9 344 65.4
BraA08t34287Z Brassica rapa HOM05D006521 ORTHO05D008087 4.4e-134 481.9 344 65.4
FAN23G2501 Fragaria x ananassa HOM05D006521 ORTHO05D008087 9.7e-134 480.7 365 69.0
CiPaw.03G138700 Carya illinoinensis HOM05D006521 ORTHO05D008087 8.5e-130 467.6 364 65.1
HanXRQChr16g0527921 Helianthus annuus HOM05D006521 ORTHO05D008087 1.9e-129 466.5 359 67.1
Sabra05G0065200 Salix brachista HOM05D006521 ORTHO05D004292 4.2e-129 465.3 363 66.1
Haze_24978 Corylus avellana HOM05D006521 ORTHO05D008087 1.2e-128 463.8 353 66.3
Sc16g0005450 Simmondsia chinensis HOM05D006521 ORTHO05D008087 3.6e-128 462.2 361 65.1
Rhsim10G0157900 Rhododendron simsii HOM05D006521 ORTHO05D008087 3.0e-127 459.1 359 65.2
SGA_v2.0_scaffold2G01323 Striga asiatica HOM05D006521 ORTHO05D008087 4.0e-127 458.8 367 64.9
SHI11594 Sapria himalayana HOM05D006521 ORTHO05D008087 1.5e-126 456.8 375 62.9
Cc07_g15580 Coffea canephora HOM05D006521 ORTHO05D008087 2.8e-125 452.6 362 65.7
ECA234G2647 Erigeron canadensis HOM05D006521 ORTHO05D008087 4.8e-125 451.8 354 66.7
Lsat_1_v5_gn_4_21220 Lactuca sativa HOM05D006521 ORTHO05D008087 1.1e-124 450.7 363 65.8
Lsat_1_v5_gn_2_67800 Lactuca sativa HOM05D006521 ORTHO05D008087 7.7e-123 444.5 344 67.2
SalBow3G0008 Salvia bowleyana HOM05D006521 ORTHO05D008087 1.0e-122 444.1 358 62.8
AUR62002034 Chenopodium quinoa HOM05D006521 ORTHO05D008087 6.5e-122 441.4 335 65.4
AUR62003763 Chenopodium quinoa HOM05D006521 ORTHO05D008087 5.5e-121 438.3 335 65.1
Migut.H02388 Erythranthe guttata HOM05D006521 ORTHO05D008087 7.2e-121 438.0 354 62.1
Oeu053565.1 Olea europaea HOM05D006521 ORTHO05D008087 1.2e-120 437.2 362 62.7
Cfa002704 Carpinus fangiana HOM05D006521 ORTHO05D008087 2.7e-120 436.0 353 64.0
Ah.02g122760 Amaranthus hybridus HOM05D006521 ORTHO05D008087 8.0e-120 434.5 361 62.3
HanXRQChr15g0471711 Helianthus annuus HOM05D006521 ORTHO05D008087 1.0e-119 434.1 340 64.7
Nitab4.5_0000715g0180 Nicotiana tabacum HOM05D006521 ORTHO05D008087 2.0e-118 429.9 357 62.7
Ah.02g120360 Amaranthus hybridus HOM05D006521 ORTHO05D008087 2.6e-118 429.5 354 61.9
Sopen05g030360 Solanum pennellii HOM05D006521 ORTHO05D008087 7.5e-118 427.9 356 61.8
PGSC0003DMG400021832 Solanum tuberosum HOM05D006521 ORTHO05D008087 2.2e-117 426.4 356 61.5
Solyc05g051840.1 Solanum lycopersicum HOM05D006521 ORTHO05D008087 2.8e-117 426.0 356 61.5
unitig_32.g11814 Utricularia gibba HOM05D006521 ORTHO05D008087 5.4e-116 421.8 353 60.9
Hund13498 Selenicereus undatus HOM05D006521 ORTHO05D008087 1.6e-115 420.2 336 64.9
CAN.G1494.2 Capsicum annuum HOM05D006521 ORTHO05D008087 2.7e-115 419.5 368 60.1
DCAR_011503 Daucus carota HOM05D006521 ORTHO05D008087 2.6e-110 402.9 366 59.6
Lj4A881T25 Lonicera japonica HOM05D006521 ORTHO05D008087 1.6e-107 393.7 360 60.8
Nn1g05268 Nelumbo nucifera HOM05D006521 ORTHO05D008087 2.0e-107 393.3 306 62.4
BcaNung05326 Brassica carinata HOM05D006521 ORTHO05D008087 3.9e-106 389.0 306 60.1
Lj4A883T21 Lonicera japonica HOM05D006521 ORTHO05D008087 2.1e-104 383.3 354 59.0
HPP92_016137 Vanilla planifolia HOM05D006521 ORTHO05D008087 8.0e-104 381.3 346 57.5
ATR0789G153 Amborella trichopoda HOM05D006521 ORTHO05D008087 3.4e-102 375.9 471 43.1
CDE10G1235 Ceratophyllum demersum HOM05D006521 ORTHO05D008087 3.7e-101 372.5 355 53.8
Nitab4.5_0005597g0010 Nicotiana tabacum HOM05D006521 ORTHO05D008087 4.6e-99 365.5 356 56.2
Actinidia36602 Actinidia chinensis HOM05D006521 ORTHO05D008087 7.8e-99 364.8 294 63.9
Atru.chr1.3715 Acer truncatum HOM05D006521 ORTHO05D008087 5.0e-98 362.1 358 55.3
COL.COLO4_09911 Corchorus olitorius HOM05D006521 ORTHO05D008087 8.9e-95 351.3 361 52.9
C01p00850 Brassica napus HOM05D006521 ORTHO05D008087 4.4e-86 322.4 362 50.0
SEGI_26188 Sequoiadendron giganteum HOM05D006521 ORTHO05D008087 1.5e-81 307.4 564 33.3
Mapoly0165s0018 Marchantia polymorpha HOM05D006521 ORTHO05D008087 9.6e-73 278.1 430 37.2
SMO353G0213 Selaginella moellendorffii HOM05D006521 ORTHO05D008087 1.3e-72 277.7 341 42.5
EL10Ac6g15070 Beta vulgaris HOM05D006521 ORTHO05D008087 2.8e-72 276.6 198 70.7
A01p00740 Brassica napus HOM05D006521 ORTHO05D008087 6.2e-72 275.4 261 54.4
AagrBONN_evm.TU.Sc2ySwM_368.767 Anthoceros agrestis HOM05D006521 ORTHO05D008087 1.4e-71 274.2 408 37.3
Pp3c19_5060 Physcomitrium patens HOM05D006521 ORTHO05D008087 2.0e-70 270.4 401 37.7
Pp3c22_3810 Physcomitrium patens HOM05D006521 ORTHO05D008087 9.9e-70 268.1 431 37.6
Os02g0550400 Oryza sativa ssp. japonica HOM05D006521 ORTHO05D008087 8.7e-66 255.0 335 44.8
ECA238G1388 Erigeron canadensis HOM05D001700 ORTHO05D002131 3.2e-60 236.5 155 74.2
Atru.chr1.3697 Acer truncatum HOM05D006521 ORTHO05D008087 5.5e-60 235.7 146 80.8
ECA238G2228 Erigeron canadensis HOM05D006521 ORTHO05D008087 5.5e-60 235.7 154 74.0
Pp3c10_9400 Physcomitrium patens HOM05D006521 ORTHO05D008087 1.2e-59 234.6 397 32.7
Pp3c14_5890 Physcomitrium patens HOM05D006521 ORTHO05D008087 3.1e-55 219.9 400 32.0
BcaNung00904 Brassica carinata HOM05D006521 ORTHO05D008087 2.8e-48 196.8 115 80.9
Peaxi162Scf00295g00033 Petunia axillaris HOM05D006521 ORTHO05D008087 2.8e-48 196.8 170 60.0
HanXRQChr10g0288811 Helianthus annuus HOM05D006521 ORTHO05D008087 6.9e-39 165.6 105 80.0
CBR_g34484 Chara braunii HOM05D006521 ORTHO05D008087 4.2e-36 156.4 257 36.2
TAR636G0192 Trochodendron aralioides HOM05D006521 ORTHO05D008087 9.7e-33 145.2 126 61.1
FAN13G3020 Fragaria x ananassa HOM05D005489 ORTHO05D006629 5.7e-25 119.4 102 58.8
GSVIVG01022164001 Vitis vinifera HOM05D006521 ORTHO05D008087 3.3e-17 93.6 70 71.4
Atru.chr1.3698 Acer truncatum HOM05D006521 ORTHO05D008087 6.8e-10 69.3 68 54.4
PRCOL_00001846 Prasinoderma coloniale HOM05D006521 ORTHO05D008087 6.8e-10 69.3 271 26.9
CDE10G1372 Ceratophyllum demersum HOM05D006521 ORTHO05D008087 8.8e-10 68.9 93 43.0


User provided reference genes

Program Settings