Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_16468_v3 Cicer arietinum L. HOM05D004390 ORTHO05D004950 2.2e-48 195.3 99 100.0
Psat5g095200 Pisum sativum HOM05D004390 ORTHO05D004950 2.7e-41 171.8 93 92.5
Medtr3g085510 Medicago truncatula HOM05D004390 ORTHO05D004950 6.5e-40 167.2 93 89.2
TPR.G28271 Trifolium pratense HOM05D004390 ORTHO05D004950 1.6e-38 162.5 93 88.2
Glyma.11G249600 Glycine max HOM05D004390 ORTHO05D004950 3.4e-36 154.8 93 79.6
Medtr8g080380 Medicago truncatula HOM05D004390 ORTHO05D004950 2.2e-35 152.1 93 78.5
arahy.Tifrunner.gnm1.ann1.FA6GLZ Arachis hypogaea HOM05D004390 ORTHO05D004950 2.8e-35 151.8 93 79.6
Ca_18042_v3 Cicer arietinum L. HOM05D004390 ORTHO05D004950 3.7e-35 151.4 93 80.6
Glyma.18G007600 Glycine max HOM05D004390 ORTHO05D004950 3.7e-35 151.4 93 80.6
Psat4g014960 Pisum sativum HOM05D004390 ORTHO05D004950 6.3e-35 150.6 93 78.5
Phvul.001G260900 Phaseolus vulgaris HOM05D004390 ORTHO05D004950 8.3e-35 150.2 93 79.6
Lj4g0026719 Lotus japonicus HOM05D004390 ORTHO05D004950 3.1e-34 148.3 93 78.5
arahy.Tifrunner.gnm1.ann1.L53BL2 Arachis hypogaea HOM05D004390 ORTHO05D004950 4.1e-34 147.9 92 79.3
Glyma.08G103600 Glycine max HOM05D004390 ORTHO05D004950 4.1e-34 147.9 93 78.5
QL03p053718 Quercus lobata HOM05D004390 ORTHO05D004950 5.4e-34 147.5 93 76.3
Glyma.05G146700 Glycine max HOM05D004390 ORTHO05D004950 9.2e-34 146.7 93 78.5
arahy.Tifrunner.gnm1.ann1.CM82MG Arachis hypogaea HOM05D004390 ORTHO05D004950 1.2e-33 146.4 93 77.4
Haze_10374 Corylus avellana HOM05D004390 ORTHO05D004950 7.8e-33 143.7 93 76.3
Phvul.002G174400 Phaseolus vulgaris HOM05D004390 ORTHO05D004950 7.8e-33 143.7 93 75.3
CSS0004094 Camellia sinensis var. sinensis HOM05D004390 ORTHO05D004950 3.8e-32 141.4 93 73.1
CSS0048605 Camellia sinensis var. sinensis HOM05D004390 ORTHO05D004950 3.8e-32 141.4 93 73.1
Cfa009329 Carpinus fangiana HOM05D004390 ORTHO05D004950 3.8e-32 141.4 94 75.5
Eucgr.B03484 Eucalyptus grandis HOM05D004390 ORTHO05D004950 5.0e-32 141.0 94 76.6
MELO3C011874.2 Cucumis melo HOM05D004390 ORTHO05D004950 6.6e-32 140.6 93 74.2
Lj7E465T0 Lonicera japonica HOM05D004390 ORTHO05D004950 1.5e-31 139.4 93 74.2
CiPaw.06G101400 Carya illinoinensis HOM05D004390 ORTHO05D004950 2.5e-31 138.7 92 75.0
QL12p006243 Quercus lobata HOM05D004390 ORTHO05D004950 2.5e-31 138.7 93 72.0
ClCG11G013760 Citrullus lanatus HOM05D004390 ORTHO05D004950 3.3e-31 138.3 94 73.4
CsaV3_5G030350 Cucumis sativus L. HOM05D004390 ORTHO05D004950 3.3e-31 138.3 93 73.1
Cpa.g.sc34.218 Carica papaya HOM05D004390 ORTHO05D004950 5.6e-31 137.5 93 73.1
Manes.12G012800 Manihot esculenta HOM05D004390 ORTHO05D004950 5.6e-31 137.5 93 74.2
Duzib248G1577 Durio zibethinus HOM05D004390 ORTHO05D004950 1.2e-30 136.3 93 74.2
ECA233G0624 Erigeron canadensis HOM05D004390 ORTHO05D004950 1.2e-30 136.3 93 71.0
ECA240G0924 Erigeron canadensis HOM05D004390 ORTHO05D004950 1.2e-30 136.3 93 71.0
Prupe.1G228300 Prunus persica HOM05D004390 ORTHO05D004950 1.2e-30 136.3 93 72.0
CANSAT80G1060 Cannabis sativa HOM05D004390 ORTHO05D004950 1.6e-30 136.0 92 73.9
GSVIVG01010448001 Vitis vinifera HOM05D004390 ORTHO05D004950 1.6e-30 136.0 94 72.3
DCAR_007008 Daucus carota HOM05D004390 ORTHO05D004950 2.1e-30 135.6 92 71.7
Lsat_1_v5_gn_8_149361 Lactuca sativa HOM05D004390 ORTHO05D004950 3.6e-30 134.8 93 68.8
Atru.chr11.2308 Acer truncatum HOM05D004390 ORTHO05D004950 4.7e-30 134.4 93 72.0
Dinv14827 Davidia involucrata HOM05D001171 ORTHO05D001872 6.1e-30 134.0 93 73.1
Gohir.D01G154700 Gossypium hirsutum HOM05D004390 ORTHO05D004950 6.1e-30 134.0 93 68.8
Gorai.002G191500 Gossypium raimondii HOM05D004390 ORTHO05D004950 6.1e-30 134.0 93 68.8
Sed0024223 Sechium edule HOM05D004390 ORTHO05D004950 8.0e-30 133.7 93 68.8
FAN07G0791 Fragaria x ananassa HOM05D004390 ORTHO05D004950 1.0e-29 133.3 94 70.2
FAN17G1207 Fragaria x ananassa HOM05D004390 ORTHO05D004950 1.0e-29 133.3 94 70.2
FAN22G0688 Fragaria x ananassa HOM05D004390 ORTHO05D004950 1.0e-29 133.3 94 70.2
TAR622G0138 Trochodendron aralioides HOM05D004390 ORTHO05D004950 1.0e-29 133.3 92 69.6
FvH4_4g23930 Fragaria vesca HOM05D004390 ORTHO05D004950 1.4e-29 132.9 94 69.1
FAN12G2113 Fragaria x ananassa HOM05D006059 ORTHO05D004950 1.4e-29 132.9 94 69.1
TAR371G0820 Trochodendron aralioides HOM05D004390 ORTHO05D004950 1.4e-29 132.9 92 70.7
Gohir.A01G155400 Gossypium hirsutum HOM05D004390 ORTHO05D004950 1.8e-29 132.5 93 68.8
HanXRQChr08g0207731 Helianthus annuus HOM05D004390 ORTHO05D004950 1.8e-29 132.5 93 69.9
Migut.K00715 Erythranthe guttata HOM05D004390 ORTHO05D004950 3.0e-29 131.7 93 67.7
Nn3g16498 Nelumbo nucifera HOM05D004390 ORTHO05D004950 3.0e-29 131.7 93 72.0
Sabra08G0134000 Salix brachista HOM05D004390 ORTHO05D004950 5.2e-29 131.0 94 70.2
Thecc.02G210700 Theobroma cacao HOM05D004390 ORTHO05D004950 5.2e-29 131.0 93 72.0
Aqoxy5G03398 Aquilegia oxysepala HOM05D004390 ORTHO05D004950 6.8e-29 130.6 100 67.0
Hma1.2p1_0065F.1_g035640 Hydrangea macrophylla HOM05D004390 ORTHO05D004950 6.8e-29 130.6 93 71.0
Potri.008G175775 Populus trichocarpa HOM05D004390 ORTHO05D004950 6.8e-29 130.6 94 68.1
COL.COLO4_20382 Corchorus olitorius HOM05D001171 ORTHO05D001872 1.2e-28 129.8 93 71.0
BcaNung00935 Brassica carinata HOM05D004390 ORTHO05D004950 1.5e-28 129.4 93 71.0
Carub.0007s0202 Capsella rubella HOM05D004390 ORTHO05D004950 1.5e-28 129.4 93 72.0
CARHR246620 Cardamine hirsuta HOM05D004390 ORTHO05D004950 2.0e-28 129.0 89 73.0
Cc11_g00910 Coffea canephora HOM05D004390 ORTHO05D004950 2.0e-28 129.0 93 68.8
Duzib251G0716 Durio zibethinus HOM05D004390 ORTHO05D004950 2.0e-28 129.0 93 69.9
Thhalv10027263m.g Eutrema salsugineum HOM05D004390 ORTHO05D004950 2.0e-28 129.0 93 71.0
TWI18G1082 Tripterygium wilfordii HOM05D004390 ORTHO05D004950 2.0e-28 129.0 93 69.9
Actinidia20702 Actinidia chinensis HOM05D004390 ORTHO05D004950 2.6e-28 128.6 93 68.8
Potri.010G059300 Populus trichocarpa HOM05D004390 ORTHO05D004950 3.4e-28 128.3 93 68.8
Sp7g35820 Schrenkiella parvula HOM05D004390 ORTHO05D004950 3.4e-28 128.3 93 69.9
AL7G12360 Arabidopsis lyrata HOM05D004390 ORTHO05D004950 4.4e-28 127.9 93 71.0
Gohir.A12G148600 Gossypium hirsutum HOM05D004390 ORTHO05D004950 4.4e-28 127.9 93 66.7
Nitab4.5_0000379g0030 Nicotiana tabacum HOM05D004390 ORTHO05D004950 4.4e-28 127.9 93 66.7
BolC1t00106H Brassica oleracea HOM05D004390 ORTHO05D004950 5.7e-28 127.5 93 69.9
TAR629G1658 Trochodendron aralioides HOM05D004390 ORTHO05D004950 5.7e-28 127.5 92 67.4
Nitab4.5_0002210g0100 Nicotiana tabacum HOM05D004390 ORTHO05D004950 7.5e-28 127.1 93 67.7
PGR102G2095 Punica granatum HOM05D004390 ORTHO05D004950 7.5e-28 127.1 96 68.8
TWI36G1003 Tripterygium wilfordii HOM05D004390 ORTHO05D004950 7.5e-28 127.1 93 68.8
A01p00960 Brassica napus HOM05D004390 ORTHO05D004950 9.8e-28 126.7 93 69.9
BraA01t00094Z Brassica rapa HOM05D004390 ORTHO05D004950 9.8e-28 126.7 93 69.9
Gorai.008G164900 Gossypium raimondii HOM05D004390 ORTHO05D004950 9.8e-28 126.7 93 67.7
Nitab4.5_0000367g0030 Nicotiana tabacum HOM05D004390 ORTHO05D004950 9.8e-28 126.7 93 65.6
Rhsim10G0039200 Rhododendron simsii HOM05D004390 ORTHO05D004950 9.8e-28 126.7 89 66.3
Actinidia08077 Actinidia chinensis HOM05D001171 ORTHO05D001872 1.3e-27 126.3 93 67.7
Actinidia09657 Actinidia chinensis HOM05D004390 ORTHO05D004950 1.3e-27 126.3 93 67.7
EL10Ac6g13484 Beta vulgaris HOM05D004390 ORTHO05D004950 1.3e-27 126.3 94 63.8
Lalb_Chr12g0206281 Lupinus albus HOM05D004390 ORTHO05D004950 1.3e-27 126.3 81 79.0
Peaxi162Scf00128g01124 Petunia axillaris HOM05D004390 ORTHO05D004950 1.3e-27 126.3 93 66.7
Cc09_g06290 Coffea canephora HOM05D015856 ORTHO05D004950 1.7e-27 125.9 93 68.8
Migut.E00025 Erythranthe guttata HOM05D004390 ORTHO05D004950 2.2e-27 125.6 93 64.5
Nn4g22350 Nelumbo nucifera HOM05D004390 ORTHO05D004950 2.2e-27 125.6 93 65.6
Ah.02g130970 Amaranthus hybridus HOM05D004390 ORTHO05D004950 2.9e-27 125.2 94 66.0
Oeu058917.1 Olea europaea HOM05D004390 ORTHO05D004950 2.9e-27 125.2 93 65.6
Gohir.D12G152500 Gossypium hirsutum HOM05D004390 ORTHO05D004950 4.9e-27 124.4 93 66.7
Sc11g0000500 Simmondsia chinensis HOM05D004390 ORTHO05D004950 4.9e-27 124.4 94 62.8
THA.LOC104824895 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 4.9e-27 124.4 93 67.7
THA.LOC104824892 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 6.4e-27 124.0 93 66.7
THA.LOC104824896 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 6.4e-27 124.0 93 66.7
THA.LOC109116235 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 6.4e-27 124.0 79 73.4
CAN.G638.34 Capsicum annuum HOM05D004390 ORTHO05D004950 8.3e-27 123.6 93 66.7
MBI11_g07456_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 8.3e-27 123.6 93 67.7
TWI75G0215 Tripterygium wilfordii HOM05D004390 ORTHO05D004950 1.4e-26 122.9 93 66.7
Nitab4.5_0000592g0450 Nicotiana tabacum HOM05D004390 ORTHO05D004950 1.8e-26 122.5 93 65.6
THA.LOC104824898 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 1.8e-26 122.5 93 66.7
HPP92_024163 Vanilla planifolia HOM05D000064 ORTHO05D000281 2.4e-26 122.1 94 63.8
HPP92_024177 Vanilla planifolia HOM05D004390 ORTHO05D004950 2.4e-26 122.1 94 63.8
Lalb_Chr07g0187411 Lupinus albus HOM05D004390 ORTHO05D004950 3.2e-26 121.7 81 71.6
DCAR_031195 Daucus carota HOM05D001171 ORTHO05D006126 4.1e-26 121.3 93 63.4
AT2G22425 Arabidopsis thaliana HOM05D004390 ORTHO05D004950 5.4e-26 120.9 93 68.8
Aa31LG7G15420 Aethionema arabicum HOM05D004390 ORTHO05D004950 7.0e-26 120.6 93 67.7
AT4G40042 Arabidopsis thaliana HOM05D004390 ORTHO05D004950 7.0e-26 120.6 79 72.2
AUR62024125 Chenopodium quinoa HOM05D004390 ORTHO05D004950 7.0e-26 120.6 81 67.9
ClCG09G006830 Citrullus lanatus HOM05D004390 ORTHO05D004950 7.0e-26 120.6 93 63.4
Rhsim12G0027700 Rhododendron simsii HOM05D004390 ORTHO05D004950 7.0e-26 120.6 79 68.4
Sopen03g001750 Solanum pennellii HOM05D004390 ORTHO05D004950 7.0e-26 120.6 93 63.4
Aa31LG7G14400 Aethionema arabicum HOM05D004390 ORTHO05D004950 9.2e-26 120.2 93 66.7
CARHR113610 Cardamine hirsuta HOM05D004390 ORTHO05D004950 9.2e-26 120.2 94 68.1
THA.LOC104824890 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 9.2e-26 120.2 93 65.6
SpUn0131_0010 Schrenkiella parvula HOM05D004390 ORTHO05D004950 1.2e-25 119.8 93 67.7
Hund25458 Selenicereus undatus HOM05D004390 ORTHO05D004950 1.6e-25 119.4 93 61.3
Aa31LG6G15170 Aethionema arabicum HOM05D004390 ORTHO05D004950 3.5e-25 118.2 93 64.5
Os12g0438900 Oryza sativa ssp. japonica HOM05D004390 ORTHO05D004950 3.5e-25 118.2 96 63.5
BraA09t41150Z Brassica rapa HOM05D004390 ORTHO05D004950 4.6e-25 117.9 93 65.6
AL4G11930 Arabidopsis lyrata HOM05D004390 ORTHO05D004950 5.9e-25 117.5 93 67.7
A09p57580 Brassica napus HOM05D004390 ORTHO05D004950 1.0e-24 116.7 93 63.4
Carub.0004s0159 Capsella rubella HOM05D004390 ORTHO05D004950 1.0e-24 116.7 94 66.0
Thhalv10000378m.g Eutrema salsugineum HOM05D004390 ORTHO05D004950 1.0e-24 116.7 94 66.0
Lsat_1_v5_gn_3_29821 Lactuca sativa HOM05D004390 ORTHO05D004950 1.0e-24 116.7 92 62.0
Duzib268G0993 Durio zibethinus HOM05D004390 ORTHO05D004950 1.3e-24 116.3 93 62.4
C08p40770 Brassica napus HOM05D004390 ORTHO05D004950 2.3e-24 115.5 93 64.5
CSS0024228 Camellia sinensis var. sinensis HOM05D004390 ORTHO05D004950 2.3e-24 115.5 94 63.8
BcaB08g35066 Brassica carinata HOM05D004390 ORTHO05D004950 3.0e-24 115.2 93 64.5
Thhalv10021836m.g Eutrema salsugineum HOM05D004390 ORTHO05D004950 6.6e-24 114.0 89 62.9
PSO478G0183 Papaver somniferum HOM05D004390 ORTHO05D004950 6.6e-24 114.0 88 64.8
PSO017G1102 Papaver somniferum HOM05D004390 ORTHO05D004950 8.6e-24 113.6 88 63.6
Ah.03g136230 Amaranthus hybridus HOM05D001171 ORTHO05D006126 1.1e-23 113.2 94 62.8
BcaC07g41074 Brassica carinata HOM05D004390 ORTHO05D004950 1.9e-23 112.5 93 63.4
BolC8t51641H Brassica oleracea HOM05D004390 ORTHO05D004950 1.9e-23 112.5 93 63.4
Zm00001eb052740 Zea mays HOM05D004390 ORTHO05D004950 2.5e-23 112.1 96 61.5
MBI13_g26147_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 5.6e-23 110.9 89 62.9
CiPaw.05G111600 Carya illinoinensis HOM05D004390 ORTHO05D004950 1.2e-22 109.8 80 70.0
Carub.0003s1416 Capsella rubella HOM05D004390 ORTHO05D004950 1.6e-22 109.4 89 57.3
CARHR089330 Cardamine hirsuta HOM05D004390 ORTHO05D004950 1.6e-22 109.4 79 60.8
ATR0561G166 Amborella trichopoda HOM05D004390 ORTHO05D004950 2.8e-22 108.6 88 56.8
RcHm_v2.0_Chr4g0430591 Rosa chinensis HOM05D004390 ORTHO05D004950 2.8e-22 108.6 83 68.7
Zm00001eb218300 Zea mays HOM05D004390 ORTHO05D004950 4.7e-22 107.8 96 60.4
MBI05_g44034_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 6.2e-22 107.5 93 61.3
PSO063G2970 Papaver somniferum HOM05D004390 ORTHO05D004950 1.8e-21 105.9 93 55.9
SEGI_16803 Sequoiadendron giganteum HOM05D004390 ORTHO05D004950 1.8e-21 105.9 96 58.3
PSO782G4737 Papaver somniferum HOM05D004390 ORTHO05D004950 6.8e-21 104.0 93 53.8
MD13G1117200 Malus domestica HOM05D004390 ORTHO05D004950 8.9e-21 103.6 83 66.3
TPR.G10940 Trifolium pratense HOM05D004390 ORTHO05D004950 7.5e-20 100.5 65 75.4
Solyc03g005740.3 Solanum lycopersicum HOM05D004390 ORTHO05D004950 9.8e-20 100.1 81 61.7
ATR1098G064 Amborella trichopoda HOM05D004390 ORTHO05D004950 1.3e-19 99.8 95 54.7
SMO364G0480 Selaginella moellendorffii HOM05D004390 ORTHO05D004950 2.9e-19 98.6 94 55.3
MBI07_g16243_MAGBIO Magnolia biondii HOM05D002351 ORTHO05D004950 8.3e-19 97.1 82 62.2
Pp3c10_14440 Physcomitrium patens HOM05D004390 ORTHO05D004950 1.9e-18 95.9 74 59.5
Pp3c4_12150 Physcomitrium patens HOM05D004390 ORTHO05D004950 1.2e-17 93.2 97 50.5
Mapoly0041s0086 Marchantia polymorpha HOM05D004390 ORTHO05D004950 1.2e-14 83.2 97 49.5
Sp3g12740 Schrenkiella parvula HOM05D004390 ORTHO05D004950 3.6e-14 81.6 61 63.9
Manes.13G018500 Manihot esculenta HOM05D004390 ORTHO05D004950 4.7e-14 81.3 71 57.7
SMO145G0172 Selaginella moellendorffii HOM05D004390 ORTHO05D004950 1.8e-13 79.3 89 42.7
CBR_g48133 Chara braunii HOM05D004390 ORTHO05D004950 2.6e-12 75.5 69 49.3
MBI07_g34630_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 2.6e-12 75.5 60 58.3
PRCOL_00005433 Prasinoderma coloniale HOM05D004390 ORTHO05D004950 4.9e-11 71.2 71 43.7
Nn1g04852 Nelumbo nucifera HOM05D004390 ORTHO05D004950 4.1e-10 68.2 52 61.5
Nn4g24822 Nelumbo nucifera HOM05D002155 ORTHO05D004950 4.1e-10 68.2 52 61.5
Lalb_Chr22g0358881 Lupinus albus HOM05D004390 ORTHO05D004950 1.6e-09 66.2 40 75.0
MCO16G111 Micromonas commoda HOM05D004390 ORTHO05D004950 2.1e-09 65.9 100 40.0
Pp3c3_460 Physcomitrium patens HOM05D004390 ORTHO05D004950 2.1e-09 65.9 83 38.6
SMO197G0059 Selaginella moellendorffii HOM05D004390 ORTHO05D004950 7.8e-09 63.9 82 41.5


User provided reference genes

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