Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_16464_v3 Cicer arietinum L. HOM05D007500 ORTHO05D009197 4.8e-66 254.6 151 100.0
Medtr3g085430 Medicago truncatula HOM05D007500 ORTHO05D009197 2.5e-51 205.7 131 84.7
Psat5g095440 Pisum sativum HOM05D007500 ORTHO05D009197 3.4e-48 195.3 131 83.2
TPR.G28279 Trifolium pratense HOM05D007500 ORTHO05D009197 1.3e-47 193.4 116 90.5
VMungo1383G3421 Vigna mungo HOM05D007500 ORTHO05D009197 1.3e-42 176.8 135 71.9
Glyma.11G250000 Glycine max HOM05D007500 ORTHO05D009197 6.3e-42 174.5 134 71.6
Glyma.18G007100 Glycine max HOM05D007500 ORTHO05D009197 2.4e-41 172.6 132 73.5
Phvul.001G261300 Phaseolus vulgaris HOM05D007500 ORTHO05D009197 9.0e-41 170.6 135 70.4
arahy.Tifrunner.gnm1.ann1.Z93F9T Arachis hypogaea HOM05D007500 ORTHO05D009197 1.3e-36 156.8 138 66.7
ClCG08G010070 Citrullus lanatus HOM05D007500 ORTHO05D009197 5.1e-36 154.8 129 67.4
Lj6g0001546 Lotus japonicus HOM05D007500 ORTHO05D009197 1.9e-35 152.9 130 67.7
CsaV3_6G032240 Cucumis sativus L. HOM05D007500 ORTHO05D009197 2.5e-35 152.5 130 66.9
QL93p2010_0098 Quercus lobata HOM05D007500 ORTHO05D009197 4.3e-35 151.8 129 65.9
Dinv14836 Davidia involucrata HOM05D007500 ORTHO05D009197 2.2e-34 149.4 134 63.4
QL03p052860 Quercus lobata HOM05D007500 ORTHO05D009197 2.2e-34 149.4 129 65.1
QL03p053117 Quercus lobata HOM05D007500 ORTHO05D009197 2.2e-34 149.4 129 65.1
MELO3C011458.2 Cucumis melo HOM05D007500 ORTHO05D009197 2.8e-34 149.1 129 66.7
Gohir.A03G126600 Gossypium hirsutum HOM05D007500 ORTHO05D009197 4.8e-34 148.3 131 63.4
Haze_12411 Corylus avellana HOM05D007500 ORTHO05D009197 1.8e-33 146.4 128 64.1
CANSAT01G0539 Cannabis sativa HOM05D007500 ORTHO05D009197 2.4e-33 146.0 132 63.6
COL.COLO4_20391 Corchorus olitorius HOM05D007500 ORTHO05D009197 3.1e-33 145.6 130 62.3
Sed0012176 Sechium edule HOM05D007500 ORTHO05D009197 4.1e-33 145.2 128 63.3
AT5G43250 Arabidopsis thaliana HOM05D007500 ORTHO05D009197 6.9e-33 144.4 126 61.9
Gohir.D02G150000 Gossypium hirsutum HOM05D007500 ORTHO05D009197 6.9e-33 144.4 131 61.8
Gorai.005G168300 Gossypium raimondii HOM05D007500 ORTHO05D009197 6.9e-33 144.4 131 61.8
Ciclev10033679m.g Citrus clementina HOM05D007500 ORTHO05D009197 9.1e-33 144.1 133 61.7
CSS0001813 Camellia sinensis var. sinensis HOM05D007500 ORTHO05D009197 1.2e-32 143.7 117 64.1
Cfa009364 Carpinus fangiana HOM05D007500 ORTHO05D009197 1.2e-32 143.7 123 63.4
Atru.chr11.2314 Acer truncatum HOM05D007500 ORTHO05D009197 1.5e-32 143.3 132 58.3
CiPaw.05G110500 Carya illinoinensis HOM05D007500 ORTHO05D009197 1.5e-32 143.3 130 62.3
THA.LOC104814194 Tarenaya hassleriana HOM05D007500 ORTHO05D009197 1.5e-32 143.3 129 61.2
Duzib268G0307 Durio zibethinus HOM05D007500 ORTHO05D009197 2.0e-32 142.9 132 62.1
Solyc05g015330.1 Solanum lycopersicum HOM05D007500 ORTHO05D009197 1.0e-31 140.6 132 58.3
Carub.0008s0545 Capsella rubella HOM05D007500 ORTHO05D009197 1.3e-31 140.2 131 57.3
Nn5g28851 Nelumbo nucifera HOM05D007500 ORTHO05D009197 1.3e-31 140.2 126 60.3
Sp2g08040 Schrenkiella parvula HOM05D007500 ORTHO05D009197 1.3e-31 140.2 131 61.8
Aa31LG9G13320 Aethionema arabicum HOM05D007500 ORTHO05D009197 1.7e-31 139.8 132 59.8
Potri.001G055000 Populus trichocarpa HOM05D007500 ORTHO05D009197 1.7e-31 139.8 138 55.8
Sopen05g010600 Solanum pennellii HOM05D007500 ORTHO05D009197 1.7e-31 139.8 132 58.3
TAR381G0854 Trochodendron aralioides HOM05D007500 ORTHO05D009197 2.9e-31 139.0 127 60.6
Aqoxy6G00433 Aquilegia oxysepala HOM05D007500 ORTHO05D009197 3.8e-31 138.7 139 56.1
AL8G17240 Arabidopsis lyrata HOM05D007500 ORTHO05D009197 3.8e-31 138.7 128 60.2
Sc14g0009050 Simmondsia chinensis HOM05D007500 ORTHO05D009197 3.8e-31 138.7 127 58.3
C07p25790 Brassica napus HOM05D007500 ORTHO05D009197 6.5e-31 137.9 131 61.1
Sabra01G0039500 Salix brachista HOM05D007500 ORTHO05D009197 6.5e-31 137.9 123 60.2
Thecc.02G209700 Theobroma cacao HOM05D007500 ORTHO05D009197 6.5e-31 137.9 133 57.9
BcaC06g31713 Brassica carinata HOM05D007500 ORTHO05D009197 1.1e-30 137.1 131 60.3
BcaC06g31714 Brassica carinata HOM05D007500 ORTHO05D009197 1.1e-30 137.1 131 60.3
Manes.12G012100 Manihot esculenta HOM05D007500 ORTHO05D009197 1.1e-30 137.1 132 60.6
PGR102G0196 Punica granatum HOM05D007500 ORTHO05D009197 1.1e-30 137.1 128 58.6
Cpa.g.sc43.48 Carica papaya HOM05D007500 ORTHO05D009197 2.5e-30 136.0 130 60.8
Cc11_g16840 Coffea canephora HOM05D007500 ORTHO05D009197 3.2e-30 135.6 134 58.2
PGSC0003DMG400029106 Solanum tuberosum HOM05D007500 ORTHO05D009197 3.2e-30 135.6 136 55.9
Peaxi162Scf00128g00124 Petunia axillaris HOM05D007500 ORTHO05D009197 9.4e-30 134.0 116 61.2
BcaC06g34668 Brassica carinata HOM05D007500 ORTHO05D009197 1.2e-29 133.7 133 58.6
BolC7t43101H Brassica oleracea HOM05D007500 ORTHO05D009197 1.2e-29 133.7 133 58.6
AUR62024115 Chenopodium quinoa HOM05D007500 ORTHO05D009197 1.2e-29 133.7 127 55.9
Nitab4.5_0001404g0040 Nicotiana tabacum HOM05D007500 ORTHO05D009197 1.2e-29 133.7 117 59.8
Thhalv10003290m.g Eutrema salsugineum HOM05D007500 ORTHO05D009197 1.6e-29 133.3 129 60.5
Lalb_Chr08g0230661 Lupinus albus HOM05D007500 ORTHO05D009197 1.6e-29 133.3 131 59.5
TWI18G0612 Tripterygium wilfordii HOM05D007500 ORTHO05D009197 2.7e-29 132.5 138 55.1
A06p47960 Brassica napus HOM05D007500 ORTHO05D009197 4.6e-29 131.7 130 57.7
BraA06t27666Z Brassica rapa HOM05D007500 ORTHO05D009197 4.6e-29 131.7 130 57.7
DCAR_031200 Daucus carota HOM05D007500 ORTHO05D009197 4.6e-29 131.7 127 56.7
Lsat_1_v5_gn_8_131281 Lactuca sativa HOM05D007500 ORTHO05D009197 4.6e-29 131.7 133 54.1
AUR62005615 Chenopodium quinoa HOM05D007500 ORTHO05D009197 2.3e-28 129.4 121 57.9
Nitab4.5_0000861g0040 Nicotiana tabacum HOM05D007500 ORTHO05D009197 2.3e-28 129.4 115 60.9
CARHR180640 Cardamine hirsuta HOM05D007500 ORTHO05D009197 3.9e-28 128.6 125 53.6
Actinidia30653 Actinidia chinensis HOM05D007500 ORTHO05D009197 6.7e-28 127.9 119 61.3
EL10Ac6g13495 Beta vulgaris HOM05D007500 ORTHO05D009197 1.5e-27 126.7 129 58.1
HanXRQChr09g0258281 Helianthus annuus HOM05D007500 ORTHO05D009197 1.5e-27 126.7 135 51.9
MSTRG.7998 Avicennia marina HOM05D007500 ORTHO05D009197 1.3e-26 123.6 132 53.8
Prupe.1G226700 Prunus persica HOM05D007500 ORTHO05D009197 1.7e-26 123.2 155 49.7
PSO541G0382 Papaver somniferum HOM05D007500 ORTHO05D009197 2.2e-26 122.9 116 56.0
Rhsim12G0026300 Rhododendron simsii HOM05D007500 ORTHO05D009197 6.3e-26 121.3 124 56.5
SGA_v2.0_scaffold9G04716 Striga asiatica HOM05D007500 ORTHO05D009197 8.2e-26 120.9 139 53.2
Migut.K00728 Erythranthe guttata HOM05D007500 ORTHO05D009197 1.8e-25 119.8 137 51.8
MBI01_g29007_MAGBIO Magnolia biondii HOM05D007500 ORTHO05D009197 6.9e-25 117.9 128 50.8
unitig_26.g10395 Utricularia gibba HOM05D007500 ORTHO05D009197 2.6e-24 115.9 138 52.2
CAN.G43.17 Capsicum annuum HOM05D007500 ORTHO05D009197 4.5e-24 115.2 105 61.0
ECA233G2547 Erigeron canadensis HOM05D007500 ORTHO05D009197 4.5e-24 115.2 104 57.7
FAN12G0274 Fragaria x ananassa HOM05D007500 ORTHO05D009197 4.5e-24 115.2 122 54.9
FAN17G2194 Fragaria x ananassa HOM05D007500 ORTHO05D009197 5.9e-24 114.8 130 53.1
FAN22G1415 Fragaria x ananassa HOM05D007500 ORTHO05D009197 7.7e-24 114.4 130 53.1
SalBow2G0500 Salvia bowleyana HOM05D007500 ORTHO05D009197 7.7e-24 114.4 107 58.9
FvH4_4g23840 Fragaria vesca HOM05D007500 ORTHO05D009197 1.3e-23 113.6 122 54.1
FAN07G2442 Fragaria x ananassa HOM05D007500 ORTHO05D009197 1.1e-22 110.5 130 52.3
Ah.03g136190 Amaranthus hybridus HOM05D007500 ORTHO05D009197 3.2e-22 109.0 131 48.9
PSO675G4883 Papaver somniferum HOM05D007500 ORTHO05D009197 9.4e-22 107.5 105 55.2
ATR1120G099 Amborella trichopoda HOM05D007500 ORTHO05D009197 1.6e-21 106.7 115 54.8
RcHm_v2.0_Chr4g0430411 Rosa chinensis HOM05D007500 ORTHO05D009197 5.2e-20 101.7 108 55.6
MD16G1118400 Malus domestica HOM05D007500 ORTHO05D009197 8.8e-20 100.9 123 48.8
CDE06G2379 Ceratophyllum demersum HOM05D007500 ORTHO05D009197 1.5e-19 100.1 115 47.0
MD13G1118300 Malus domestica HOM05D007500 ORTHO05D009197 2.0e-19 99.8 123 48.8
HPP92_002864 Vanilla planifolia HOM05D007500 ORTHO05D009197 3.7e-18 95.5 94 54.3
Zm00001eb122050 Zea mays HOM05D007500 ORTHO05D009197 1.2e-16 90.5 131 40.5
Os01g0183400 Oryza sativa ssp. japonica HOM05D007500 ORTHO05D009197 3.2e-14 82.4 118 39.0
CAN.G1248.23 Capsicum annuum HOM05D000764 ORTHO05D009197 4.4e-11 72.0 53 64.2
SEGI_35529 Sequoiadendron giganteum HOM05D007500 ORTHO05D009197 4.4e-11 72.0 88 43.2
PSO017G0374 Papaver somniferum HOM05D000789 ORTHO05D000897 2.9e-07 59.3 86 43.0
PSO478G0136 Papaver somniferum HOM05D000789 ORTHO05D000897 2.9e-07 59.3 86 43.0
CDE04G1622 Ceratophyllum demersum HOM05D002489 ORTHO05D002653 3.8e-07 58.9 119 31.1
Pp3c13_23370 Physcomitrium patens HOM05D020496 ORTHO05D009197 3.8e-07 58.9 102 37.3
Pp3c13_23373 Physcomitrium patens HOM05D020496 ORTHO05D009197 3.8e-07 58.9 102 37.3
C01p52760 Brassica napus HOM05D002489 ORTHO05D002653 1.5e-06 57.0 77 40.3
BolC1t05213H Brassica oleracea HOM05D002489 ORTHO05D002653 1.5e-06 57.0 77 40.3
SMO358G0741 Selaginella moellendorffii HOM05D020496 ORTHO05D009197 1.9e-06 56.6 87 33.3
Aa31sc1276G10 Aethionema arabicum HOM05D002489 ORTHO05D002653 2.5e-06 56.2 77 39.0
AT3G12480 Arabidopsis thaliana HOM05D002489 ORTHO05D002653 2.5e-06 56.2 129 31.0
BcaB04g18680 Brassica carinata HOM05D002489 ORTHO05D002653 2.5e-06 56.2 133 30.1
BcaC09g48244 Brassica carinata HOM05D002489 ORTHO05D002653 2.5e-06 56.2 77 39.0
A03p37630 Brassica napus HOM05D002489 ORTHO05D002653 2.5e-06 56.2 77 39.0
BNapus_Darmor_BZH_scaffold_149p00010 Brassica napus HOM05D002489 ORTHO05D002653 2.5e-06 56.2 77 39.0
C03p45620 Brassica napus HOM05D002489 ORTHO05D002653 2.5e-06 56.2 77 39.0
BolC3t16839H Brassica oleracea HOM05D002489 ORTHO05D002653 2.5e-06 56.2 77 39.0
BraA01t04134Z Brassica rapa HOM05D002489 ORTHO05D002653 2.5e-06 56.2 77 39.0
BraA03t12917Z Brassica rapa HOM05D002489 ORTHO05D002653 2.5e-06 56.2 77 39.0
Carub.0003s1181 Capsella rubella HOM05D002489 ORTHO05D002653 2.5e-06 56.2 129 31.0
Cc00_g08160 Coffea canephora HOM05D002489 ORTHO05D002653 2.5e-06 56.2 121 30.6
ECA246G2484 Erigeron canadensis HOM05D000789 ORTHO05D000897 2.5e-06 56.2 88 39.8
HanXRQChr03g0091651 Helianthus annuus HOM05D002489 ORTHO05D002653 2.5e-06 56.2 108 33.3
Sp3g10610 Schrenkiella parvula HOM05D002489 ORTHO05D002653 2.5e-06 56.2 77 39.0
HPP92_017588 Vanilla planifolia HOM05D000789 ORTHO05D000897 2.5e-06 56.2 78 42.3
SGA_v2.0_scaffold29G12136 Striga asiatica HOM05D002489 ORTHO05D002653 3.2e-06 55.8 101 31.7
GSVIVG01036581001 Vitis vinifera HOM05D002489 ORTHO05D002653 3.2e-06 55.8 79 36.7
BcaB04g21076 Brassica carinata HOM05D002489 ORTHO05D002653 4.2e-06 55.5 133 29.3
Dinv31993 Davidia involucrata HOM05D002489 ORTHO05D002653 4.2e-06 55.5 123 30.1
Thhalv10021246m.g Eutrema salsugineum HOM05D002489 ORTHO05D002653 4.2e-06 55.5 133 28.6
Sed0020453 Sechium edule HOM05D002489 ORTHO05D002653 4.2e-06 55.5 115 32.2
AT5G19490 Arabidopsis thaliana HOM05D002489 ORTHO05D002653 5.5e-06 55.1 107 32.7
CARHR086980 Cardamine hirsuta HOM05D002489 ORTHO05D002653 5.5e-06 55.1 127 31.5
CDE07G0320 Ceratophyllum demersum HOM05D002489 ORTHO05D002653 5.5e-06 55.1 121 28.1
THA.LOC104809911 Tarenaya hassleriana HOM05D002489 ORTHO05D002653 5.5e-06 55.1 77 37.7
TAR622G0989 Trochodendron aralioides HOM05D000789 ORTHO05D000897 5.5e-06 55.1 79 44.3
unitig_26.g9492 Utricularia gibba HOM05D002489 ORTHO05D002653 5.5e-06 55.1 120 28.3
GSVIVG01037394001 Vitis vinifera HOM05D002489 ORTHO05D002653 5.5e-06 55.1 101 33.7
ATR0307G117 Amborella trichopoda HOM05D002489 ORTHO05D002653 7.2e-06 54.7 108 33.3
ATR0709G046 Amborella trichopoda HOM05D002489 ORTHO05D002653 7.2e-06 54.7 79 36.7
Duzib068G0355 Durio zibethinus HOM05D000789 ORTHO05D000897 7.2e-06 54.7 79 41.8
Gohir.A12G190000 Gossypium hirsutum HOM05D000789 ORTHO05D000897 7.2e-06 54.7 79 41.8
Oeu005001.1 Olea europaea HOM05D000789 ORTHO05D000897 7.2e-06 54.7 79 43.0
PGR083G1421 Punica granatum HOM05D000789 ORTHO05D000897 7.2e-06 54.7 79 43.0
TAR629G0626 Trochodendron aralioides HOM05D000789 ORTHO05D000897 7.2e-06 54.7 79 43.0
unitig_0.g1248 Utricularia gibba HOM05D001512 ORTHO05D001574 7.2e-06 54.7 88 39.8
unitig_61.g26371 Utricularia gibba HOM05D000789 ORTHO05D000897 7.2e-06 54.7 112 35.7
Aqoxy3G01568 Aquilegia oxysepala HOM05D000789 ORTHO05D000897 9.4e-06 54.3 79 41.8
PGR119G0475 Punica granatum HOM05D002489 ORTHO05D002653 9.4e-06 54.3 121 29.8
TAR629G0558 Trochodendron aralioides HOM05D000789 ORTHO05D000897 9.4e-06 54.3 79 41.8
unitig_749.g14338 Utricularia gibba HOM05D000789 ORTHO05D000897 9.4e-06 54.3 79 43.0


User provided reference genes

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