Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_16369_v3 Cicer arietinum L. HOM05D002056 ORTHO05D002289 2.5e-36 154.8 75 100.0
Psat1g178600 Pisum sativum HOM05D002056 ORTHO05D002289 5.0e-16 87.4 67 70.1
Ca_00694_v3 Cicer arietinum L. HOM05D002056 ORTHO05D002289 6.5e-16 87.0 67 71.6
Ca_00693_v3 Cicer arietinum L. HOM05D002056 ORTHO05D002289 1.9e-15 85.5 71 64.8
Glyma.15G112000 Glycine max HOM05D002056 ORTHO05D002289 2.5e-15 85.1 65 70.8
Medtr2g024420 Medicago truncatula HOM05D002056 ORTHO05D002289 2.5e-15 85.1 66 69.7
TPR.G13148 Trifolium pratense HOM05D002056 ORTHO05D002289 7.2e-15 83.6 74 64.9
Lalb_Chr20g0118961 Lupinus albus HOM05D002056 ORTHO05D002289 9.4e-15 83.2 66 68.2
VMungo0540G1622 Vigna mungo HOM05D002056 ORTHO05D002289 2.1e-14 82.0 63 69.8
Glyma.09G007600 Glycine max HOM05D002056 ORTHO05D002289 8.0e-14 80.1 63 69.8
Phvul.006G145600 Phaseolus vulgaris HOM05D002056 ORTHO05D002289 8.0e-14 80.1 65 66.2
Phvul.006G145700 Phaseolus vulgaris HOM05D002056 ORTHO05D002289 8.0e-14 80.1 65 66.2
Lj6g0024413 Lotus japonicus HOM05D002056 ORTHO05D002289 1.4e-13 79.3 61 68.9
Lalb_Chr18g0056591 Lupinus albus HOM05D002056 ORTHO05D002289 3.0e-13 78.2 64 65.6
Lj4g0001049 Lotus japonicus HOM05D002056 ORTHO05D002289 2.6e-12 75.1 63 63.5
arahy.Tifrunner.gnm1.ann1.P08TCF Arachis hypogaea HOM05D002056 ORTHO05D002289 4.4e-12 74.3 64 62.5
CiPaw.09G098100 Carya illinoinensis HOM05D002056 ORTHO05D002289 9.7e-12 73.2 62 62.9
arahy.Tifrunner.gnm1.ann1.2A7RP8 Arachis hypogaea HOM05D002056 ORTHO05D002289 1.7e-11 72.4 66 62.1
arahy.Tifrunner.gnm1.ann1.CB7RQG Arachis hypogaea HOM05D002056 ORTHO05D002289 1.7e-11 72.4 66 62.1
Cfa000161 Carpinus fangiana HOM05D002056 ORTHO05D002289 1.7e-11 72.4 64 60.9
Haze_06857 Corylus avellana HOM05D002056 ORTHO05D002289 1.7e-11 72.4 64 60.9
CiPaw.10G074600 Carya illinoinensis HOM05D002056 ORTHO05D002289 2.8e-11 71.6 64 59.4
Lalb_Chr15g0087761 Lupinus albus HOM05D002056 ORTHO05D002289 4.8e-11 70.9 64 60.9
RcHm_v2.0_Chr5g0002101 Rosa chinensis HOM05D002056 ORTHO05D002289 6.3e-11 70.5 65 56.9
Thecc.06G228200 Theobroma cacao HOM05D002056 ORTHO05D002289 8.3e-11 70.1 71 57.7
vmacro03664 Vaccinium macrocarpon HOM05D002056 ORTHO05D002289 8.3e-11 70.1 69 52.2
Duzib192G0881 Durio zibethinus HOM05D002056 ORTHO05D002289 1.1e-10 69.7 64 56.2
QL05p071905 Quercus lobata HOM05D002056 ORTHO05D002289 1.4e-10 69.3 73 54.8
GSVIVG01004812001 Vitis vinifera HOM05D002056 ORTHO05D002289 1.4e-10 69.3 73 53.4
arahy.Tifrunner.gnm1.ann1.8B4PAD Arachis hypogaea HOM05D002056 ORTHO05D002289 1.8e-10 68.9 64 59.4
COL.COLO4_31832 Corchorus olitorius HOM05D002056 ORTHO05D002289 2.4e-10 68.6 64 56.2
Duzib235G0115 Durio zibethinus HOM05D002056 ORTHO05D002289 2.4e-10 68.6 64 54.7
Duzib160G0363 Durio zibethinus HOM05D002056 ORTHO05D005950 3.1e-10 68.2 64 56.2
Gohir.A05G173200 Gossypium hirsutum HOM05D002056 ORTHO05D002289 3.1e-10 68.2 64 56.2
Gohir.D05G176200 Gossypium hirsutum HOM05D002056 ORTHO05D002289 3.1e-10 68.2 72 52.8
MD05G1352600 Malus domestica HOM05D002056 ORTHO05D002289 4.1e-10 67.8 64 57.8
TWI38G2169 Tripterygium wilfordii HOM05D002056 ORTHO05D002289 5.3e-10 67.4 64 56.2
CANSAT56G0981 Cannabis sativa HOM05D002056 ORTHO05D002289 7.0e-10 67.0 66 56.1
Gorai.009G181600 Gossypium raimondii HOM05D002056 ORTHO05D002289 9.1e-10 66.6 59 59.3
Manes.16G002900 Manihot esculenta HOM05D002056 ORTHO05D002289 1.2e-09 66.2 72 55.6
Atru.chr10.2284 Acer truncatum HOM05D002056 ORTHO05D002289 2.0e-09 65.5 57 61.4
Gohir.A06G206100 Gossypium hirsutum HOM05D002056 ORTHO05D002289 2.0e-09 65.5 66 57.6
MBI16_g32955_MAGBIO Magnolia biondii HOM05D002056 ORTHO05D002289 2.7e-09 65.1 65 55.4
Dinv20107 Davidia involucrata HOM05D002056 ORTHO05D002289 3.5e-09 64.7 62 54.8
Nn1g07276 Nelumbo nucifera HOM05D002056 ORTHO05D002289 3.5e-09 64.7 68 54.4
FAN25G3859 Fragaria x ananassa HOM05D002056 ORTHO05D002289 4.5e-09 64.3 65 55.4
MD10G1326800 Malus domestica HOM05D002056 ORTHO05D002289 4.5e-09 64.3 63 58.7
SGA_v2.0_scaffold4G01893 Striga asiatica HOM05D002056 ORTHO05D002289 4.5e-09 64.3 71 54.9
TAR627G0856 Trochodendron aralioides HOM05D002056 ORTHO05D002289 4.5e-09 64.3 74 54.1
MSTRG.7180 Avicennia marina HOM05D002056 ORTHO05D002289 5.9e-09 63.9 72 55.6
Dinv13939 Davidia involucrata HOM05D002056 ORTHO05D002289 5.9e-09 63.9 72 51.4
FvH4_3g01390 Fragaria vesca HOM05D002056 ORTHO05D002289 5.9e-09 63.9 65 55.4
FAN21G2569 Fragaria x ananassa HOM05D002056 ORTHO05D002289 5.9e-09 63.9 65 55.4
PGR042G2006 Punica granatum HOM05D002056 ORTHO05D002289 5.9e-09 63.9 64 57.8
SalBow8G3803 Salvia bowleyana HOM05D002056 ORTHO05D002289 5.9e-09 63.9 63 57.1
Migut.M01370 Erythranthe guttata HOM05D002056 ORTHO05D002289 7.7e-09 63.5 68 54.4
Manes.17G027200 Manihot esculenta HOM05D002056 ORTHO05D002289 7.7e-09 63.5 64 56.2
vmacro12172 Vaccinium macrocarpon HOM05D002056 ORTHO05D002289 7.7e-09 63.5 72 51.4
Ciclev10016067m.g Citrus clementina HOM05D002056 ORTHO05D002289 1.0e-08 63.2 63 60.3
SGA_v2.0_scaffold7G03783 Striga asiatica HOM05D002056 ORTHO05D002289 1.0e-08 63.2 55 61.8
TAR627G0322 Trochodendron aralioides HOM05D002056 ORTHO05D002289 1.0e-08 63.2 74 54.1
Potri.006G270300 Populus trichocarpa HOM05D002056 ORTHO05D002289 1.3e-08 62.8 63 54.0
Potri.011G005000 Populus trichocarpa HOM05D002056 ORTHO05D002289 1.3e-08 62.8 63 54.0
Potri.011G011300 Populus trichocarpa HOM05D002056 ORTHO05D002289 1.3e-08 62.8 63 54.0
Actinidia03597 Actinidia chinensis HOM05D002056 ORTHO05D002289 1.7e-08 62.4 71 56.3
Gohir.D06G215400 Gossypium hirsutum HOM05D002056 ORTHO05D002289 1.7e-08 62.4 66 54.5
Gorai.010G251000 Gossypium raimondii HOM05D002056 ORTHO05D002289 1.7e-08 62.4 66 54.5
CSS0002860 Camellia sinensis var. sinensis HOM05D002056 ORTHO05D002289 2.2e-08 62.0 71 49.3
PSO675G6209 Papaver somniferum HOM05D002056 ORTHO05D002289 2.2e-08 62.0 64 54.7
HPP92_004737 Vanilla planifolia HOM05D002056 ORTHO05D002289 2.2e-08 62.0 76 46.1
MBI10_g07294_MAGBIO Magnolia biondii HOM05D002056 ORTHO05D002289 2.9e-08 61.6 54 61.1
PSO541G3543 Papaver somniferum HOM05D002056 ORTHO05D002289 2.9e-08 61.6 64 54.7
QL08p031047 Quercus lobata HOM05D002056 ORTHO05D002289 2.9e-08 61.6 79 48.1
Hma1.2p1_0298F.1_g117460 Hydrangea macrophylla HOM05D002056 ORTHO05D002289 3.8e-08 61.2 71 52.1
Potri.004G004200 Populus trichocarpa HOM05D002056 ORTHO05D002289 3.8e-08 61.2 59 54.2
Sabra11G0008400 Salix brachista HOM05D002056 ORTHO05D002289 3.8e-08 61.2 63 54.0
Sabra11G0010000 Salix brachista HOM05D002056 ORTHO05D002289 3.8e-08 61.2 63 54.0
Sabra11G0011500 Salix brachista HOM05D002056 ORTHO05D002289 3.8e-08 61.2 63 54.0
Actinidia26884 Actinidia chinensis HOM05D002056 ORTHO05D002289 5.0e-08 60.8 68 51.5
Eucgr.E03986 Eucalyptus grandis HOM05D002056 ORTHO05D002289 5.0e-08 60.8 64 51.6
Sabra04G0002300 Salix brachista HOM05D002056 ORTHO05D002289 5.0e-08 60.8 63 50.8
arahy.Tifrunner.gnm1.ann1.0R8S6T Arachis hypogaea HOM05D002056 ORTHO05D002289 6.5e-08 60.5 68 54.4
Oeu002749.1 Olea europaea HOM05D002056 ORTHO05D002289 6.5e-08 60.5 71 52.1
Sc05g0009450 Simmondsia chinensis HOM05D002056 ORTHO05D002289 6.5e-08 60.5 71 47.9
TAR629G0679 Trochodendron aralioides HOM05D002056 ORTHO05D002289 6.5e-08 60.5 64 53.1
Aqoxy1G03510 Aquilegia oxysepala HOM05D002056 ORTHO05D002289 8.5e-08 60.1 63 52.4
CSS0018929 Camellia sinensis var. sinensis HOM05D002056 ORTHO05D002289 8.5e-08 60.1 64 53.1
Cc09_g01180 Coffea canephora HOM05D002056 ORTHO05D002289 8.5e-08 60.1 71 50.7
Dinv08731 Davidia involucrata HOM05D002056 ORTHO05D002289 8.5e-08 60.1 74 48.6
Oeu051883.1 Olea europaea HOM05D002056 ORTHO05D002289 8.5e-08 60.1 67 53.7
arahy.Tifrunner.gnm1.ann1.H4FFSI Arachis hypogaea HOM05D002056 ORTHO05D002289 1.1e-07 59.7 68 52.9
THA.LOC104813423 Tarenaya hassleriana HOM05D002056 ORTHO05D002289 1.1e-07 59.7 71 47.9
Ah.01g014970 Amaranthus hybridus HOM05D002056 ORTHO05D002289 1.5e-07 59.3 73 45.2
Lalb_Chr17g0347331 Lupinus albus HOM05D002056 ORTHO05D002289 1.5e-07 59.3 68 50.0
Psat2g022040 Pisum sativum HOM05D002056 ORTHO05D002289 1.9e-07 58.9 61 57.4
Potri.014G157200 Populus trichocarpa HOM05D002056 ORTHO05D002289 1.9e-07 58.9 64 53.1
Sabra02G0172800 Salix brachista HOM05D002056 ORTHO05D002289 1.9e-07 58.9 74 48.6
CSS0017085 Camellia sinensis var. sinensis HOM05D002056 ORTHO05D002289 2.5e-07 58.5 62 53.2
Thhalv10025821m.g Eutrema salsugineum HOM05D002056 ORTHO05D002289 2.5e-07 58.5 76 47.4
LjContig00564g0000978 Lotus japonicus HOM05D002056 ORTHO05D002289 2.5e-07 58.5 80 46.2
Actinidia02337 Actinidia chinensis HOM05D002056 ORTHO05D002289 3.2e-07 58.2 72 47.2
Hma1.2p1_0177F.1_g077880 Hydrangea macrophylla HOM05D002056 ORTHO05D002289 3.2e-07 58.2 71 47.9
MD17G1102700 Malus domestica HOM05D002056 ORTHO05D002289 3.2e-07 58.2 65 49.2
Ca_06107_v3 Cicer arietinum L. HOM05D002056 ORTHO05D002289 4.2e-07 57.8 70 48.6
ClCG01G009710 Citrullus lanatus HOM05D002056 ORTHO05D002289 4.2e-07 57.8 64 53.1
CsaV3_1G046080 Cucumis sativus L. HOM05D002056 ORTHO05D002289 4.2e-07 57.8 64 51.6
Sed0009660 Sechium edule HOM05D002056 ORTHO05D002289 4.2e-07 57.8 64 51.6
TWI38G1577 Tripterygium wilfordii HOM05D002056 ORTHO05D002289 4.2e-07 57.8 66 50.0
Ah.09g234510 Amaranthus hybridus HOM05D002056 ORTHO05D002289 5.5e-07 57.4 57 57.9
Glyma.14G046900 Glycine max HOM05D002056 ORTHO05D002289 5.5e-07 57.4 73 49.3
Lj1C1236T13 Lonicera japonica HOM05D002056 ORTHO05D002289 5.5e-07 57.4 51 58.8
A09p26420 Brassica napus HOM05D002056 ORTHO05D002289 7.2e-07 57.0 57 50.9
HanXRQChr15g0470811 Helianthus annuus HOM05D002056 ORTHO05D002289 7.2e-07 57.0 63 47.6
Potri.002G225800 Populus trichocarpa HOM05D002056 ORTHO05D002289 7.2e-07 57.0 74 48.6
BcaC09g51157 Brassica carinata HOM05D002056 ORTHO05D002289 9.4e-07 56.6 70 47.1
C01p16330 Brassica napus HOM05D002056 ORTHO05D002289 9.4e-07 56.6 70 47.1
BolC1t01584H Brassica oleracea HOM05D002056 ORTHO05D002289 9.4e-07 56.6 70 47.1
AUR62025014 Chenopodium quinoa HOM05D002056 ORTHO05D002289 9.4e-07 56.6 69 47.8
Glyma.02G270000 Glycine max HOM05D002056 ORTHO05D002289 9.4e-07 56.6 73 47.9
PSO732G0811 Papaver somniferum HOM05D002056 ORTHO05D002289 9.4e-07 56.6 63 52.4
AT4G22150 Arabidopsis thaliana HOM05D002056 ORTHO05D002289 1.2e-06 56.2 55 54.5
A01p13500 Brassica napus HOM05D002056 ORTHO05D002289 1.2e-06 56.2 70 47.1
BraA01t01291Z Brassica rapa HOM05D002056 ORTHO05D002289 1.2e-06 56.2 70 47.1
MELO3C021721.2 Cucumis melo HOM05D002056 ORTHO05D002289 1.2e-06 56.2 64 50.0
Medtr5g085870 Medicago truncatula HOM05D002056 ORTHO05D002289 1.2e-06 56.2 70 47.1
Solyc02g081140.3 Solanum lycopersicum HOM05D002056 ORTHO05D002289 1.2e-06 56.2 64 46.9
Sopen02g025780 Solanum pennellii HOM05D002056 ORTHO05D002289 1.2e-06 56.2 64 46.9
Peaxi162Scf00147g01412 Petunia axillaris HOM05D002056 ORTHO05D002289 1.6e-06 55.8 61 52.5
Rhsim06G0166500 Rhododendron simsii HOM05D002056 ORTHO05D002289 1.6e-06 55.8 72 47.2
GSVIVG01030489001 Vitis vinifera HOM05D002056 ORTHO05D002289 1.6e-06 55.8 64 51.6
BcaB01g01798 Brassica carinata HOM05D002056 ORTHO05D002289 2.1e-06 55.5 76 43.4
BcaC04g21281 Brassica carinata HOM05D002056 ORTHO05D002289 2.1e-06 55.5 57 50.9
C09p33610 Brassica napus HOM05D002056 ORTHO05D002289 2.1e-06 55.5 57 50.9
BolC9t56195H Brassica oleracea HOM05D002056 ORTHO05D002289 2.1e-06 55.5 57 50.9
AUR62012758 Chenopodium quinoa HOM05D002056 ORTHO05D002289 2.1e-06 55.5 67 47.8
ECA236G4610 Erigeron canadensis HOM05D002056 ORTHO05D005950 2.1e-06 55.5 63 46.0
Nitab4.5_0007492g0010 Nicotiana tabacum HOM05D002056 ORTHO05D002289 2.1e-06 55.5 61 49.2
Prupe.3G212000 Prunus persica HOM05D002056 ORTHO05D002289 2.1e-06 55.5 73 47.9
Sp6g04570 Schrenkiella parvula HOM05D002056 ORTHO05D002289 2.1e-06 55.5 84 42.9
TPR.G14456 Trifolium pratense HOM05D002056 ORTHO05D002289 2.1e-06 55.5 61 54.1
Ah.14g087840 Amaranthus hybridus HOM05D002056 ORTHO05D002289 2.7e-06 55.1 72 48.6
Carub.0007s1917 Capsella rubella HOM05D002056 ORTHO05D002289 2.7e-06 55.1 72 47.2
CAN.G664.5 Capsicum annuum HOM05D002056 ORTHO05D002289 2.7e-06 55.1 53 54.7
CARHR228980 Cardamine hirsuta HOM05D002056 ORTHO05D002289 2.7e-06 55.1 67 47.8
FAN02G0342 Fragaria x ananassa HOM05D002056 ORTHO05D002289 2.7e-06 55.1 74 41.9
FAN05G0472 Fragaria x ananassa HOM05D002056 ORTHO05D002289 2.7e-06 55.1 74 41.9
Nitab4.5_0003449g0010 Nicotiana tabacum HOM05D002056 ORTHO05D002289 2.7e-06 55.1 57 52.6
Nitab4.5_0008906g0010 Nicotiana tabacum HOM05D002056 ORTHO05D002289 2.7e-06 55.1 59 50.8
Solyc07g049260.4 Solanum lycopersicum HOM05D002056 ORTHO05D002289 2.7e-06 55.1 53 54.7
Sopen07g024590 Solanum pennellii HOM05D002056 ORTHO05D002289 2.7e-06 55.1 53 54.7
Carub.0007s2657 Capsella rubella HOM05D002056 ORTHO05D002289 3.6e-06 54.7 74 50.0
CARHR253300 Cardamine hirsuta HOM05D002056 ORTHO05D002289 3.6e-06 54.7 70 47.1
AUR62021900 Chenopodium quinoa HOM05D002056 ORTHO05D002289 3.6e-06 54.7 68 47.1
MD09G1112600 Malus domestica HOM05D002056 ORTHO05D002289 3.6e-06 54.7 51 58.8
Peaxi162Scf00921g00138 Petunia axillaris HOM05D002056 ORTHO05D002289 3.6e-06 54.7 69 49.3
Hund21437 Selenicereus undatus HOM05D002056 ORTHO05D002289 3.6e-06 54.7 52 53.8
PGSC0003DMG400000670 Solanum tuberosum HOM05D002056 ORTHO05D002289 3.6e-06 54.7 53 54.7
AT4G15410 Arabidopsis thaliana HOM05D002056 ORTHO05D002289 4.7e-06 54.3 64 46.9
BcaNung03759 Brassica carinata HOM05D002056 ORTHO05D002289 4.7e-06 54.3 77 44.2
ClCG02G010070 Citrullus lanatus HOM05D002056 ORTHO05D002289 4.7e-06 54.3 66 50.0
FAN09G3282 Fragaria x ananassa HOM05D002056 ORTHO05D002289 4.7e-06 54.3 74 41.9
Lsat_1_v5_gn_7_14940 Lactuca sativa HOM05D002056 ORTHO05D002289 4.7e-06 54.3 51 54.9
Lj8A129T92 Lonicera japonica HOM05D002056 ORTHO05D002289 4.7e-06 54.3 71 42.3
TAR626G1012 Trochodendron aralioides HOM05D002056 ORTHO05D002289 4.7e-06 54.3 72 51.4
AL7G31540 Arabidopsis lyrata HOM05D002056 ORTHO05D002289 6.1e-06 53.9 72 45.8
SEGI_39744 Sequoiadendron giganteum HOM05D002056 ORTHO05D002289 6.1e-06 53.9 59 52.5
Aa31LG6G4300 Aethionema arabicum HOM05D002056 ORTHO05D002289 8.0e-06 53.5 72 47.2
CDE11G0066 Ceratophyllum demersum HOM05D002056 ORTHO05D002289 8.0e-06 53.5 70 51.4
CDE11G0499 Ceratophyllum demersum HOM05D002056 ORTHO05D002289 8.0e-06 53.5 70 51.4
DCAR_030890 Daucus carota HOM05D002056 ORTHO05D002289 8.0e-06 53.5 73 45.2
PGSC0003DMG400016724 Solanum tuberosum HOM05D002056 ORTHO05D002289 8.0e-06 53.5 58 50.0


User provided reference genes

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