Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_16139_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 5.7e-200 700.7 344 100.0
Medtr4g079390 Medicago truncatula HOM05D003469 ORTHO05D004084 5.5e-126 454.9 346 70.2
TPR.G38733 Trifolium pratense HOM05D003469 ORTHO05D004084 1.7e-119 433.3 352 67.6
Medtr4g074860 Medicago truncatula HOM05D003469 ORTHO05D004084 7.9e-117 424.5 367 61.6
Glyma.12G027700 Glycine max HOM05D003469 ORTHO05D004084 4.1e-113 412.1 347 63.7
Glyma.11G102000 Glycine max HOM05D003469 ORTHO05D004084 2.6e-112 409.5 346 63.6
Phvul.011G031000 Phaseolus vulgaris HOM05D003469 ORTHO05D004084 5.5e-110 401.7 346 61.8
arahy.Tifrunner.gnm1.ann1.046I3L Arachis hypogaea HOM05D003469 ORTHO05D004084 6.3e-106 388.3 346 59.5
arahy.Tifrunner.gnm1.ann1.M9HC5A Arachis hypogaea HOM05D003469 ORTHO05D004084 1.1e-105 387.5 349 59.0
Lj1g0005967 Lotus japonicus HOM05D003469 ORTHO05D004084 6.9e-105 384.8 346 60.1
Lalb_Chr07g0195581 Lupinus albus HOM05D003469 ORTHO05D004084 9.1e-105 384.4 356 58.7
TPR.G32330 Trifolium pratense HOM05D003469 ORTHO05D004084 2.6e-104 382.9 288 71.5
VMungo1127G1455 Vigna mungo HOM05D003469 ORTHO05D004084 1.3e-103 380.6 346 61.3
QL09p054764 Quercus lobata HOM05D003469 ORTHO05D004084 1.2e-88 330.9 344 52.3
Ca_19034_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 4.5e-88 328.9 212 75.0
CiPaw.03G010300 Carya illinoinensis HOM05D003469 ORTHO05D004084 1.2e-85 320.9 345 52.8
CANSAT78G0348 Cannabis sativa HOM05D003469 ORTHO05D004084 1.4e-84 317.4 345 49.0
TWI38G1177 Tripterygium wilfordii HOM05D003469 ORTHO05D004084 3.1e-81 306.2 347 48.4
Thecc.08G168800 Theobroma cacao HOM05D003469 ORTHO05D004084 7.7e-80 301.6 349 47.6
Manes.06G016500 Manihot esculenta HOM05D003469 ORTHO05D004084 1.7e-79 300.4 344 49.1
ClCG07G013810 Citrullus lanatus HOM05D003469 ORTHO05D004084 1.5e-78 297.4 348 45.4
TAR628G0771 Trochodendron aralioides HOM05D003469 ORTHO05D004084 7.2e-78 295.0 348 46.8
CsaV3_3G043790 Cucumis sativus L. HOM05D003469 ORTHO05D004084 8.0e-77 291.6 348 44.3
GSVIVG01036699001 Vitis vinifera HOM05D003469 ORTHO05D004084 8.0e-77 291.6 350 46.6
MELO3C013095.2 Cucumis melo HOM05D003469 ORTHO05D004084 1.8e-76 290.4 348 44.3
Potri.013G128900 Populus trichocarpa HOM05D003469 ORTHO05D004084 1.8e-76 290.4 340 46.2
Ciclev10019721m.g Citrus clementina HOM05D003469 ORTHO05D004084 8.8e-76 288.1 350 46.6
Nn5g27173 Nelumbo nucifera HOM05D003469 ORTHO05D004084 2.6e-75 286.6 348 44.8
Gohir.A12G230000 Gossypium hirsutum HOM05D003469 ORTHO05D004084 5.7e-75 285.4 346 46.0
Gorai.008G247300 Gossypium raimondii HOM05D003469 ORTHO05D004084 5.7e-75 285.4 346 46.5
Solyc06g063420.4 Solanum lycopersicum HOM05D003469 ORTHO05D004084 7.5e-75 285.0 360 44.4
Atru.chr9.1130 Acer truncatum HOM05D003469 ORTHO05D004084 9.8e-75 284.6 346 44.2
Prupe.8G070000 Prunus persica HOM05D003469 ORTHO05D004084 2.2e-74 283.5 347 45.0
Duzib235G0325 Durio zibethinus HOM05D003469 ORTHO05D004084 6.3e-74 282.0 346 47.4
Sed0013857 Sechium edule HOM05D003469 ORTHO05D004084 1.4e-73 280.8 348 44.0
Haze_14033 Corylus avellana HOM05D003469 ORTHO05D004084 2.4e-73 280.0 443 39.5
Eucgr.G01221 Eucalyptus grandis HOM05D003469 ORTHO05D004084 2.4e-73 280.0 351 43.6
Sopen06g022880 Solanum pennellii HOM05D003469 ORTHO05D004084 4.1e-73 279.3 351 44.4
Actinidia21939 Actinidia chinensis HOM05D003469 ORTHO05D004084 2.7e-72 276.6 334 45.5
Dinv28114 Davidia involucrata HOM05D003469 ORTHO05D004084 1.7e-71 273.9 348 44.3
MD09G1155000 Malus domestica HOM05D003469 ORTHO05D004084 2.3e-71 273.5 347 44.4
Rhsim12G0000800 Rhododendron simsii HOM05D003469 ORTHO05D004084 6.6e-71 271.9 345 44.6
CAN.G14.42 Capsicum annuum HOM05D003469 ORTHO05D004084 5.6e-70 268.9 350 43.7
Peaxi162Scf00818g00323 Petunia axillaris HOM05D003469 ORTHO05D004084 9.5e-70 268.1 353 42.8
Sc09g0010840 Simmondsia chinensis HOM05D003469 ORTHO05D004084 1.6e-69 267.3 350 44.0
RcHm_v2.0_Chr2g0151071 Rosa chinensis HOM05D003469 ORTHO05D004084 3.6e-69 266.2 347 44.4
RcHm_v2.0_Chr2g0151101 Rosa chinensis HOM05D003469 ORTHO05D004084 3.6e-69 266.2 347 44.4
Gohir.D12G231100 Gossypium hirsutum HOM05D003469 ORTHO05D004084 6.1e-69 265.4 346 44.8
DCAR_001477 Daucus carota HOM05D003469 ORTHO05D004084 5.2e-68 262.3 360 42.5
CSS0010807 Camellia sinensis var. sinensis HOM05D003469 ORTHO05D004084 1.3e-66 257.7 347 41.8
Cc00_g11470 Coffea canephora HOM05D003469 ORTHO05D004084 2.9e-66 256.5 371 41.2
Carub.0001s1741 Capsella rubella HOM05D003469 ORTHO05D004084 8.3e-66 255.0 321 42.4
FAN09G4617 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.4e-65 254.2 347 42.4
AT1G17680 Arabidopsis thaliana HOM05D003469 ORTHO05D004084 1.8e-65 253.8 321 42.1
AUR62031062 Chenopodium quinoa HOM05D003469 ORTHO05D004084 1.8e-65 253.8 348 40.5
AL1G30030 Arabidopsis lyrata HOM05D003469 ORTHO05D004084 2.4e-65 253.4 321 41.7
Thhalv10006758m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 3.2e-65 253.1 321 42.4
FvH4_6g37900 Fragaria vesca HOM05D003469 ORTHO05D004084 3.2e-65 253.1 347 42.9
Hund09398 Selenicereus undatus HOM05D003469 ORTHO05D004084 3.2e-65 253.1 326 42.0
FAN02G0848 Fragaria x ananassa HOM05D003469 ORTHO05D004084 5.4e-65 252.3 347 42.4
BcaB07g34024 Brassica carinata HOM05D003469 ORTHO05D004084 7.0e-65 251.9 321 42.1
Lj9C162G1 Lonicera japonica HOM05D003469 ORTHO05D004084 7.0e-65 251.9 343 44.6
FAN14G5376 Fragaria x ananassa HOM05D003469 ORTHO05D004084 9.2e-65 251.5 347 42.7
AUR62008300 Chenopodium quinoa HOM05D003469 ORTHO05D004084 1.2e-64 251.1 348 40.2
EL10Ac5g10861 Beta vulgaris HOM05D003469 ORTHO05D004084 1.6e-64 250.8 376 39.6
PSO170G4646 Papaver somniferum HOM05D003469 ORTHO05D004084 2.7e-64 250.0 342 43.6
THA.LOC104807542 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 2.7e-64 250.0 326 40.5
AUR62039415 Chenopodium quinoa HOM05D003469 ORTHO05D004084 5.9e-64 248.8 352 41.2
BolC4t22588H Brassica oleracea HOM05D003469 ORTHO05D004084 7.8e-64 248.4 321 41.7
Os11g0266800 Oryza sativa ssp. japonica HOM05D003469 ORTHO05D004084 1.0e-63 248.1 331 41.1
BcaC02g11929 Brassica carinata HOM05D003469 ORTHO05D004084 2.3e-63 246.9 321 41.4
A06p13570 Brassica napus HOM05D003469 ORTHO05D004084 2.3e-63 246.9 323 42.1
BraA06t24509Z Brassica rapa HOM05D003469 ORTHO05D004084 2.3e-63 246.9 323 42.1
C04p09790 Brassica napus HOM05D003469 ORTHO05D004084 3.9e-63 246.1 321 40.8
CDE05G0531 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 6.6e-63 245.4 340 40.6
Aa31LG7G2510 Aethionema arabicum HOM05D003469 ORTHO05D004084 1.5e-62 244.2 327 40.1
Nitab4.5_0003757g0100 Nicotiana tabacum HOM05D003469 ORTHO05D004084 3.3e-62 243.0 328 42.1
MBI03_g18641_MAGBIO Magnolia biondii HOM05D003469 ORTHO05D004084 7.3e-62 241.9 344 41.0
BcaC05g25689 Brassica carinata HOM05D003469 ORTHO05D004084 1.2e-61 241.1 321 40.5
C05p16090 Brassica napus HOM05D003469 ORTHO05D004084 1.2e-61 241.1 321 40.5
BolC5t30309H Brassica oleracea HOM05D003469 ORTHO05D004084 1.2e-61 241.1 321 40.5
MSTRG.1003 Avicennia marina HOM05D003469 ORTHO05D004084 2.8e-61 240.0 350 40.3
Peaxi162Scf00015g00107 Petunia axillaris HOM05D003469 ORTHO05D004084 1.0e-60 238.0 347 39.2
Lsat_1_v5_gn_4_131841 Lactuca sativa HOM05D003469 ORTHO05D004084 5.2e-60 235.7 347 40.6
RcHm_v2.0_Chr6g0293861 Rosa chinensis HOM05D003469 ORTHO05D004084 8.9e-60 235.0 358 41.3
SGA_v2.0_scaffold8G04312 Striga asiatica HOM05D003469 ORTHO05D004084 1.5e-59 234.2 349 39.3
THA.LOC104800339 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 1.5e-59 234.2 328 40.2
Zm00001eb171180 Zea mays HOM05D003469 ORTHO05D004084 4.4e-59 232.6 332 40.7
ECA232G2309 Erigeron canadensis HOM05D003469 ORTHO05D004084 5.8e-59 232.3 345 41.7
HanXRQChr09g0266911 Helianthus annuus HOM05D003469 ORTHO05D004084 5.8e-59 232.3 345 41.2
Aqoxy6G00028 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 2.9e-58 229.9 348 38.5
Lj9C173G0 Lonicera japonica HOM05D003469 ORTHO05D004084 6.4e-58 228.8 350 41.4
HPP92_015320 Vanilla planifolia HOM05D003469 ORTHO05D004084 6.4e-58 228.8 350 38.9
FAN24G3399 Fragaria x ananassa HOM05D003469 ORTHO05D004084 3.2e-57 226.5 357 39.5
TAR633G1289 Trochodendron aralioides HOM05D003469 ORTHO05D004084 9.2e-57 224.9 170 62.4
FAN15G0576 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.0e-56 223.8 357 39.5
Ah.15g095790 Amaranthus hybridus HOM05D003469 ORTHO05D004084 2.7e-56 223.4 357 38.1
Aqoxy4G02849 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 6.0e-56 222.2 349 40.1
SMO164G0159 Selaginella moellendorffii HOM05D003469 ORTHO05D004084 7.8e-56 221.9 351 37.6
unitig_26.g9845 Utricularia gibba HOM05D003469 ORTHO05D004084 1.3e-55 221.1 388 36.9
Nitab4.5_0002906g0070 Nicotiana tabacum HOM05D003469 ORTHO05D004084 1.1e-54 218.0 347 36.6
Nitab4.5_0005224g0040 Nicotiana tabacum HOM05D003469 ORTHO05D004084 1.1e-54 218.0 347 36.9
PGSC0003DMG400033134 Solanum tuberosum HOM05D003469 ORTHO05D004084 1.5e-54 217.6 164 61.6
Migut.C00329 Erythranthe guttata HOM05D003469 ORTHO05D004084 1.9e-54 217.2 351 37.3
Sp1g15780 Schrenkiella parvula HOM05D003469 ORTHO05D004084 1.8e-52 210.7 272 40.8
vmacro00914 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 3.1e-52 209.9 164 59.1
SalBow7G2370 Salvia bowleyana HOM05D003469 ORTHO05D004084 5.2e-52 209.1 348 37.1
Nitab4.5_0002354g0130 Nicotiana tabacum HOM05D003469 ORTHO05D004084 9.8e-51 204.9 281 41.3
Pp3c8_10360 Physcomitrium patens HOM05D003469 ORTHO05D004084 1.7e-50 204.1 361 34.6
Mapoly0024s0108 Marchantia polymorpha HOM05D003469 ORTHO05D004084 1.1e-49 201.4 386 33.4
FvH4_2g25610 Fragaria vesca HOM05D003469 ORTHO05D004084 1.9e-49 200.7 342 38.3
Dinv15687 Davidia involucrata HOM05D003469 ORTHO05D004084 6.0e-48 195.7 348 39.1
MD17G1141100 Malus domestica HOM05D003469 ORTHO05D004084 6.0e-48 195.7 169 59.8
FAN27G0386 Fragaria x ananassa HOM05D003469 ORTHO05D004084 7.8e-48 195.3 352 36.9
Ciclev10026956m.g Citrus clementina HOM05D003469 ORTHO05D004084 5.1e-47 192.6 288 37.2
AagrBONN_evm.TU.Sc2ySwM_362.2764 Anthoceros agrestis HOM05D003469 ORTHO05D004084 1.5e-46 191.0 349 33.2
Pp3c8_10366 Physcomitrium patens HOM05D003469 ORTHO05D004084 6.4e-42 175.6 320 34.1
Lj9A422T76 Lonicera japonica HOM05D003469 ORTHO05D004084 1.4e-41 174.5 319 37.3
SHI03012 Sapria himalayana HOM05D003469 ORTHO05D004084 4.1e-41 172.9 148 55.4
Psat0s3379g0040 Pisum sativum HOM05D003469 ORTHO05D004084 1.2e-37 161.4 97 80.4
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 5.2e-36 156.0 262 35.9
Oeu019664.1 Olea europaea HOM05D003469 ORTHO05D004084 3.2e-33 146.7 237 35.4
ATR1089G047 Amborella trichopoda HOM05D003469 ORTHO05D004084 5.4e-33 146.0 306 30.4
SEGI_05114 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 3.4e-27 126.7 100 59.0
EL10Ac5g10434 Beta vulgaris HOM05D003469 ORTHO05D004084 3.2e-25 120.2 291 29.9
CBR_g36749 Chara braunii HOM05D003469 ORTHO05D004084 2.7e-24 117.1 166 32.5
MD17G1141000 Malus domestica HOM05D003469 ORTHO05D004084 2.0e-19 100.9 108 47.2
Psat0s2166g0160 Pisum sativum HOM05D003469 ORTHO05D004084 2.6e-19 100.5 89 60.7
COL.COLO4_25120 Corchorus olitorius HOM05D003469 ORTHO05D004084 2.2e-18 97.4 197 36.5
C04p00480 Brassica napus HOM05D003469 ORTHO05D004084 3.8e-18 96.7 69 60.9
Cpa.g.sc21.245 Carica papaya HOM05D003469 ORTHO05D004084 1.1e-17 95.1 98 51.0
FAN20G2279 Fragaria x ananassa HOM05D003469 ORTHO05D004084 3.0e-15 87.0 87 44.8
SHI03013 Sapria himalayana HOM05D003469 ORTHO05D004084 2.5e-14 84.0 98 38.8
CARHR018280 Cardamine hirsuta HOM05D003469 ORTHO05D004084 1.6e-13 81.3 85 44.7
AUR62000094 Chenopodium quinoa HOM05D003469 ORTHO05D004084 3.7e-13 80.1 114 38.6
HanXRQChr13g0406831 Helianthus annuus HOM05D003469 ORTHO05D004084 8.1e-13 79.0 71 52.1
FvH4_6g38050 Fragaria vesca HOM05D003469 ORTHO05D004084 2.4e-12 77.4 164 34.8
SEGI_08666 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 6.9e-12 75.9 54 59.3
ATR0002G001 Amborella trichopoda HOM05D003469 ORTHO05D004084 1.0e-10 72.0 47 61.7
SEGI_39938 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 3.5e-08 63.5 99 33.3
Aa31LG2G17590 Aethionema arabicum HOM05D003469 ORTHO05D004084 7.4e-06 55.8 56 42.9


User provided reference genes

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