Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_15720_v3 Cicer arietinum L. HOM05D006924 ORTHO05D008218 2.3e-174 615.5 323 100.0
Psat5g028520 Pisum sativum HOM05D006924 ORTHO05D008218 3.8e-113 412.1 317 72.2
Medtr3g107530 Medicago truncatula HOM05D006924 ORTHO05D008218 1.7e-105 386.7 333 69.4
Glyma.04G068000 Glycine max HOM05D006924 ORTHO05D008218 4.1e-99 365.5 331 64.4
VMungo1309G0550 Vigna mungo HOM05D006924 ORTHO05D008218 3.1e-91 339.3 339 58.1
Glyma.06G069700 Glycine max HOM05D006924 ORTHO05D008218 1.6e-90 337.0 343 57.4
Lj1g0004722 Lotus japonicus HOM05D006924 ORTHO05D008218 5.0e-89 332.0 333 59.5
Lalb_Chr23g0268731 Lupinus albus HOM05D006924 ORTHO05D008218 2.1e-87 326.6 302 61.9
Phvul.009G094300 Phaseolus vulgaris HOM05D006924 ORTHO05D008218 1.4e-83 313.9 340 56.2
arahy.Tifrunner.gnm1.ann1.SMV5T8 Arachis hypogaea HOM05D006924 ORTHO05D008218 5.0e-81 305.4 313 57.8
TPR.G31774 Trifolium pratense HOM05D006924 ORTHO05D008218 3.0e-78 296.2 301 58.8
arahy.Tifrunner.gnm1.ann1.748QI4 Arachis hypogaea HOM05D006924 ORTHO05D008218 4.0e-78 295.8 313 56.2
GSVIVG01035827001 Vitis vinifera HOM05D006924 ORTHO05D008218 2.8e-71 273.1 298 54.4
QL02p022351 Quercus lobata HOM05D006924 ORTHO05D008218 1.2e-69 267.7 329 50.5
Cfa013171 Carpinus fangiana HOM05D006924 ORTHO05D008218 2.2e-68 263.5 263 57.0
TWI34G0486 Tripterygium wilfordii HOM05D006924 ORTHO05D008218 1.6e-66 257.3 254 56.7
Thecc.09G150000 Theobroma cacao HOM05D006924 ORTHO05D008218 1.0e-65 254.6 309 51.5
CSS0024674 Camellia sinensis var. sinensis HOM05D006924 ORTHO05D008218 1.5e-64 250.8 291 52.2
MELO3C003685.2 Cucumis melo HOM05D006924 ORTHO05D008218 3.3e-64 249.6 258 56.6
Potri.006G251700 Populus trichocarpa HOM05D006924 ORTHO05D008218 3.3e-64 249.6 261 54.4
Gorai.004G274200 Gossypium raimondii HOM05D006924 ORTHO05D008218 1.6e-63 247.3 270 54.8
Sabra06G0196700 Salix brachista HOM05D006924 ORTHO05D008218 2.8e-63 246.5 260 54.2
Gohir.D08G257200 Gossypium hirsutum HOM05D006924 ORTHO05D008218 4.7e-63 245.7 270 54.4
TWI63G1089 Tripterygium wilfordii HOM05D006924 ORTHO05D008218 4.7e-63 245.7 299 50.2
COL.COLO4_00196 Corchorus olitorius HOM05D006924 ORTHO05D008218 4.0e-62 242.7 272 54.0
Lsat_1_v5_gn_5_30481 Lactuca sativa HOM05D006924 ORTHO05D008218 8.9e-62 241.5 314 48.7
CDE04G2397 Ceratophyllum demersum HOM05D006924 ORTHO05D008218 1.5e-61 240.7 293 47.4
Duzib187G1593 Durio zibethinus HOM05D006924 ORTHO05D008218 2.0e-61 240.4 324 48.5
Migut.E01789 Erythranthe guttata HOM05D006924 ORTHO05D008218 2.0e-61 240.4 321 48.0
Ciclev10010768m.g Citrus clementina HOM05D006924 ORTHO05D008218 4.4e-61 239.2 257 52.9
Manes.03G016800 Manihot esculenta HOM05D006924 ORTHO05D008218 9.9e-61 238.0 264 53.0
PSO455G0271 Papaver somniferum HOM05D006924 ORTHO05D008218 2.2e-60 236.9 340 46.2
CsaV3_3G046540 Cucumis sativus L. HOM05D006924 ORTHO05D008218 2.9e-60 236.5 265 53.2
Nitab4.5_0009676g0020 Nicotiana tabacum HOM05D006924 ORTHO05D008218 4.9e-60 235.7 263 55.5
CAN.G6.23 Capsicum annuum HOM05D006924 ORTHO05D008218 6.4e-60 235.3 263 53.2
FAN27G0236 Fragaria x ananassa HOM05D006924 ORTHO05D008218 6.4e-60 235.3 329 46.8
ECA246G2052 Erigeron canadensis HOM05D000004 ORTHO05D000048 8.3e-60 235.0 329 46.2
FAN24G1985 Fragaria x ananassa HOM05D006924 ORTHO05D008218 1.4e-59 234.2 330 46.7
THA.LOC104815037 Tarenaya hassleriana HOM05D006924 ORTHO05D008218 1.4e-59 234.2 261 54.0
Nitab4.5_0002007g0080 Nicotiana tabacum HOM05D006924 ORTHO05D008218 5.4e-59 232.3 264 53.4
Gohir.A08G236600 Gossypium hirsutum HOM05D006924 ORTHO05D008218 1.2e-58 231.1 256 53.5
Eucgr.C02804 Eucalyptus grandis HOM05D006924 ORTHO05D008218 1.6e-58 230.7 289 48.1
Dinv15967 Davidia involucrata HOM05D006924 ORTHO05D008218 2.7e-58 229.9 267 50.9
Dinv18229 Davidia involucrata HOM05D006924 ORTHO05D008218 2.7e-58 229.9 267 50.9
Cc08_g00950 Coffea canephora HOM05D006924 ORTHO05D008218 1.0e-57 228.0 267 49.1
HanXRQChr08g0234821 Helianthus annuus HOM05D006924 ORTHO05D008218 1.0e-57 228.0 302 48.3
Sc09g0008380 Simmondsia chinensis HOM05D006924 ORTHO05D008218 1.3e-57 227.6 301 48.5
FAN20G0173 Fragaria x ananassa HOM05D006924 ORTHO05D008218 3.9e-57 226.1 325 45.8
FvH4_2g29450 Fragaria vesca HOM05D006924 ORTHO05D008218 8.6e-57 224.9 324 46.0
unitig_26.g9317 Utricularia gibba HOM05D006924 ORTHO05D008218 1.5e-56 224.2 270 49.3
Actinidia13248 Actinidia chinensis HOM05D006924 ORTHO05D008218 1.9e-56 223.8 284 50.0
Hund25749 Selenicereus undatus HOM05D006924 ORTHO05D008218 2.5e-56 223.4 325 45.5
ClCG05G017060 Citrullus lanatus HOM05D006924 ORTHO05D008218 4.3e-56 222.6 283 49.8
vmacro11153 Vaccinium macrocarpon HOM05D006924 ORTHO05D008218 4.3e-56 222.6 270 48.1
Nn8g39393 Nelumbo nucifera HOM05D006924 ORTHO05D008218 9.5e-56 221.5 266 51.1
Aa31LG3G15920 Aethionema arabicum HOM05D006924 ORTHO05D008218 1.2e-55 221.1 257 53.3
Aqoxy7G02106 Aquilegia oxysepala HOM05D006924 ORTHO05D008218 2.1e-55 220.3 286 48.3
MSTRG.1715 Avicennia marina HOM05D006924 ORTHO05D008218 2.1e-55 220.3 303 46.2
PSO455G0276 Papaver somniferum HOM05D006924 ORTHO05D008218 2.1e-55 220.3 296 47.0
Cpa.g.sc115.10 Carica papaya HOM05D006924 ORTHO05D008218 4.7e-55 219.2 258 50.8
Sed0001141 Sechium edule HOM05D006924 ORTHO05D008218 4.7e-55 219.2 255 50.6
PSO170G6279 Papaver somniferum HOM05D006924 ORTHO05D008218 6.2e-55 218.8 286 47.2
SGA_v2.0_scaffold163G37992 Striga asiatica HOM05D004464 ORTHO05D005135 8.1e-55 218.4 270 49.3
CARHR201990 Cardamine hirsuta HOM05D006924 ORTHO05D008218 2.4e-54 216.9 278 50.7
Zm00001eb385620 Zea mays HOM05D006924 ORTHO05D008218 2.4e-54 216.9 282 48.2
A10p26450 Brassica napus HOM05D006924 ORTHO05D008218 3.1e-54 216.5 251 50.2
DCAR_001517 Daucus carota HOM05D006924 ORTHO05D008218 3.1e-54 216.5 284 48.2
BraA10t44702Z Brassica rapa HOM05D006924 ORTHO05D008218 4.0e-54 216.1 258 50.0
PGSC0003DMG400020785 Solanum tuberosum HOM05D006924 ORTHO05D008218 2.0e-53 213.8 262 48.9
BcaC04g19245 Brassica carinata HOM05D006924 ORTHO05D008218 2.6e-53 213.4 258 50.0
RcHm_v2.0_Chr6g0298241 Rosa chinensis HOM05D006924 ORTHO05D008218 2.6e-53 213.4 317 44.5
Solyc08g061140.3 Solanum lycopersicum HOM05D006924 ORTHO05D008218 2.6e-53 213.4 263 49.0
BcaB08g37076 Brassica carinata HOM05D006924 ORTHO05D008218 3.4e-53 213.0 262 49.6
Sp6g32290 Schrenkiella parvula HOM05D006924 ORTHO05D008218 4.4e-53 212.6 255 51.4
CANSAT21G2575 Cannabis sativa HOM05D006924 ORTHO05D008218 5.8e-53 212.2 302 45.4
AL6G21900 Arabidopsis lyrata HOM05D006924 ORTHO05D008218 2.2e-52 210.3 259 49.4
CiPaw.08G012700 Carya illinoinensis HOM05D006924 ORTHO05D008218 2.2e-52 210.3 209 57.9
Sopen08g016210 Solanum pennellii HOM05D006924 ORTHO05D008218 2.2e-52 210.3 263 48.3
Peaxi162Scf00073g01120 Petunia axillaris HOM05D006924 ORTHO05D008218 4.9e-52 209.1 254 50.4
BolC9t59383H Brassica oleracea HOM05D006924 ORTHO05D008218 6.4e-52 208.8 251 50.2
Carub.0006s0974 Capsella rubella HOM05D006924 ORTHO05D008218 6.4e-52 208.8 254 49.6
Ah.12g064050 Amaranthus hybridus HOM05D006924 ORTHO05D008218 1.1e-51 208.0 305 44.9
MD08G1147000 Malus domestica HOM05D006924 ORTHO05D008218 1.6e-50 204.1 313 42.5
Thhalv10013990m.g Eutrema salsugineum HOM05D006924 ORTHO05D008218 3.5e-50 203.0 249 49.0
AT5G11270 Arabidopsis thaliana HOM05D006924 ORTHO05D008218 4.6e-50 202.6 262 47.3
EL10Ac2g02609 Beta vulgaris HOM05D006924 ORTHO05D008218 6.0e-50 202.2 298 45.3
ATR0564G047 Amborella trichopoda HOM05D006924 ORTHO05D008218 1.0e-49 201.4 252 46.8
Rhsim02G0195700 Rhododendron simsii HOM05D006924 ORTHO05D008218 5.1e-49 199.1 267 45.7
Os06g0601000 Oryza sativa ssp. japonica HOM05D006924 ORTHO05D008218 8.7e-49 198.4 307 43.3
Prupe.1G478200 Prunus persica HOM05D006924 ORTHO05D008218 2.5e-48 196.8 182 57.7
MBI04_g07630_MAGBIO Magnolia biondii HOM05D006924 ORTHO05D008218 9.0e-46 188.3 265 46.8
FAN15G1620 Fragaria x ananassa HOM05D006924 ORTHO05D008218 2.0e-45 187.2 254 46.1
Rhsim02G0198800 Rhododendron simsii HOM05D006924 ORTHO05D008218 3.8e-44 183.0 317 40.7
AUR62024897 Chenopodium quinoa HOM05D006924 ORTHO05D008218 1.4e-43 181.0 276 45.3
Atru.chr7.2389 Acer truncatum HOM05D006924 ORTHO05D008218 4.2e-43 179.5 158 58.2
Haze_21546 Corylus avellana HOM05D006924 ORTHO05D008218 1.2e-42 177.9 317 43.5
PGR044G1352 Punica granatum HOM05D006924 ORTHO05D008218 7.3e-40 168.7 287 42.5
SalBow1G5089 Salvia bowleyana HOM05D006924 ORTHO05D008218 2.8e-39 166.8 148 58.1
HPP92_003651 Vanilla planifolia HOM05D000347 ORTHO05D001997 9.0e-38 161.8 162 54.3
TAR626G1567 Trochodendron aralioides HOM05D006924 ORTHO05D008218 1.3e-33 147.9 148 56.1
Lj7C719T2 Lonicera japonica HOM05D006924 ORTHO05D008218 1.1e-32 144.8 216 43.1
CSS0004992 Camellia sinensis var. sinensis HOM05D006924 ORTHO05D008218 2.4e-30 137.1 120 56.7
Mapoly0029s0145 Marchantia polymorpha HOM05D006924 ORTHO05D008218 1.1e-27 128.3 266 36.1
Pp3c19_15790 Physcomitrium patens HOM05D006924 ORTHO05D008218 1.8e-25 120.9 272 35.3
AUR62030642 Chenopodium quinoa HOM05D006924 ORTHO05D008218 6.9e-22 109.0 282 35.5
Psat5g000080 Pisum sativum HOM05D006924 ORTHO05D008218 7.6e-21 105.5 91 68.1
TPR.G31762 Trifolium pratense HOM05D006924 ORTHO05D008218 8.4e-20 102.1 265 36.6
Atru.chr7.2280 Acer truncatum HOM05D006924 ORTHO05D008218 1.1e-19 101.7 113 47.8
Atru.chr10.503 Acer truncatum HOM05D006924 ORTHO05D008218 1.5e-16 91.3 298 30.5
SEGI_32810 Sequoiadendron giganteum HOM05D006924 ORTHO05D008218 3.7e-15 86.7 253 34.4
TPR.G28713 Trifolium pratense HOM05D006924 ORTHO05D008218 2.0e-13 80.9 47 78.7
Haze_21544 Corylus avellana HOM05D006924 ORTHO05D008218 3.2e-11 73.6 54 63.0
Nn2g11969 Nelumbo nucifera HOM05D006924 ORTHO05D008218 1.2e-10 71.6 171 35.1
AagrBONN_evm.TU.Sc2ySwM_368.1808 Anthoceros agrestis HOM05D006924 ORTHO05D008218 2.1e-10 70.9 131 35.9
Atru.chr1.1063 Acer truncatum HOM05D006924 ORTHO05D008218 3.3e-08 63.5 84 45.2
SMO367G1066 Selaginella moellendorffii HOM05D024584 ORTHO05D008218 3.3e-08 63.5 88 37.5
Hma1.2p1_0000F.1_g000370 Hydrangea macrophylla HOM05D006924 ORTHO05D008218 6.3e-07 59.3 97 44.3


User provided reference genes

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