Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_15652_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.7e-226 788.9 376 100.0
Ca_15660_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.7e-226 788.9 376 100.0
Medtr3g108990 Medicago truncatula HOM05D004578 ORTHO05D005529 1.2e-190 669.8 376 83.5
Ca_15651_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 6.7e-186 654.1 377 83.3
Ca_15659_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 6.7e-186 654.1 377 83.3
TPR.G12429 Trifolium pratense HOM05D004578 ORTHO05D005529 7.2e-180 634.0 377 80.4
TPR.G12360 Trifolium pratense HOM05D004578 ORTHO05D005529 7.2e-172 607.4 375 77.9
Medtr3g109010 Medicago truncatula HOM05D004578 ORTHO05D005529 1.8e-170 602.8 370 77.6
VMungo1309G1783 Vigna mungo HOM05D004578 ORTHO05D005529 5.7e-169 597.8 379 74.1
Lj1g0024454 Lotus japonicus HOM05D004578 ORTHO05D005529 5.3e-167 591.3 378 73.8
Psat5g024080 Pisum sativum HOM05D004578 ORTHO05D005529 2.7e-163 578.9 377 70.8
Phvul.009G102000 Phaseolus vulgaris HOM05D004578 ORTHO05D005529 4.7e-163 578.2 379 71.5
arahy.Tifrunner.gnm1.ann1.M0AD1K Arachis hypogaea HOM05D004578 ORTHO05D005529 1.2e-161 573.5 381 68.8
Glyma.04G076300 Glycine max HOM05D004578 ORTHO05D005529 5.7e-161 571.2 380 71.6
arahy.Tifrunner.gnm1.ann1.W2ETIH Arachis hypogaea HOM05D004578 ORTHO05D005529 7.5e-161 570.9 381 68.8
MD15G1106400 Malus domestica HOM05D004578 ORTHO05D005529 6.8e-154 547.7 377 68.7
Prupe.1G458600 Prunus persica HOM05D004578 ORTHO05D005529 1.5e-153 546.6 377 68.4
MD08G1126500 Malus domestica HOM05D004578 ORTHO05D005529 3.7e-152 542.0 377 67.9
Cfa013287 Carpinus fangiana HOM05D004578 ORTHO05D005529 8.3e-152 540.8 373 67.8
FAN27G0985 Fragaria x ananassa HOM05D004578 ORTHO05D005529 3.1e-151 538.9 373 68.4
FvH4_2g36660 Fragaria vesca HOM05D004578 ORTHO05D005529 4.1e-151 538.5 373 67.8
COL.COLO4_19019 Corchorus olitorius HOM05D004578 ORTHO05D005529 5.4e-151 538.1 373 66.5
Cfa013284 Carpinus fangiana HOM05D004578 ORTHO05D005529 1.6e-150 536.6 373 67.6
FAN15G2443 Fragaria x ananassa HOM05D004578 ORTHO05D005529 4.5e-150 535.0 373 67.6
FAN20G1103 Fragaria x ananassa HOM05D004578 ORTHO05D005529 5.9e-150 534.6 373 67.6
QL12p025440 Quercus lobata HOM05D004578 ORTHO05D005529 5.9e-150 534.6 377 66.0
Haze_21761 Corylus avellana HOM05D004578 ORTHO05D005529 7.7e-150 534.3 373 67.8
Duzib168G2341 Durio zibethinus HOM05D004578 ORTHO05D005529 1.3e-149 533.5 372 65.9
Prupe.1G458900 Prunus persica HOM05D004578 ORTHO05D005529 5.0e-149 531.6 384 65.9
Lalb_Chr11g0064181 Lupinus albus HOM05D004578 ORTHO05D005529 1.1e-148 530.4 374 66.8
CANSAT25G1430 Cannabis sativa HOM05D004578 ORTHO05D005529 4.7e-147 525.0 371 67.1
TWI32G0020 Tripterygium wilfordii HOM05D004578 ORTHO05D005529 6.1e-147 524.6 377 65.3
Cfa013283 Carpinus fangiana HOM05D004578 ORTHO05D005529 8.0e-147 524.2 373 65.4
Sabra18G0013200 Salix brachista HOM05D004578 ORTHO05D005529 2.3e-146 522.7 377 64.7
Sabra18G0015700 Salix brachista HOM05D004578 ORTHO05D005529 2.3e-146 522.7 377 64.7
CiPaw.07G211300 Carya illinoinensis HOM05D004578 ORTHO05D005529 4.0e-146 521.9 373 65.4
Thecc.09G008600 Theobroma cacao HOM05D004578 ORTHO05D005529 4.0e-146 521.9 372 64.8
ClCG05G026450 Citrullus lanatus HOM05D004578 ORTHO05D005529 4.4e-145 518.5 379 63.9
Potri.018G008700 Populus trichocarpa HOM05D004578 ORTHO05D005529 5.7e-145 518.1 377 64.5
Gorai.010G121600 Gossypium raimondii HOM05D004578 ORTHO05D005529 7.5e-145 517.7 371 65.0
A04p18950 Brassica napus HOM05D004578 ORTHO05D005529 9.8e-145 517.3 379 63.1
BolC4t26970H Brassica oleracea HOM05D004578 ORTHO05D005529 9.8e-145 517.3 379 63.1
BraA04t17495Z Brassica rapa HOM05D004578 ORTHO05D005529 9.8e-145 517.3 379 63.1
Ciclev10008459m.g Citrus clementina HOM05D004578 ORTHO05D005529 1.3e-144 516.9 374 63.9
BcaC02g08438 Brassica carinata HOM05D004578 ORTHO05D005529 2.9e-144 515.8 379 62.8
C04p54190 Brassica napus HOM05D004578 ORTHO05D005529 2.9e-144 515.8 379 62.8
Gohir.D06G107000 Gossypium hirsutum HOM05D004578 ORTHO05D005529 3.7e-144 515.4 371 64.7
Gohir.A06G104800 Gossypium hirsutum HOM05D004578 ORTHO05D005529 6.3e-144 514.6 371 64.2
Thhalv10000150m.g Eutrema salsugineum HOM05D004578 ORTHO05D005529 8.3e-144 514.2 380 62.4
Aa31sc715G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 2.4e-143 512.7 377 62.9
BcaB06g27986 Brassica carinata HOM05D004578 ORTHO05D005529 7.0e-143 511.1 375 62.9
Manes.16G134500 Manihot esculenta HOM05D004578 ORTHO05D005529 7.0e-143 511.1 377 62.6
Sabra06G0211200 Salix brachista HOM05D004578 ORTHO05D005529 7.0e-143 511.1 372 64.2
Sp4g03570 Schrenkiella parvula HOM05D004578 ORTHO05D005529 9.2e-143 510.8 380 61.8
CARHR117360 Cardamine hirsuta HOM05D004578 ORTHO05D005529 1.2e-142 510.4 380 61.3
Ciclev10008463m.g Citrus clementina HOM05D004578 ORTHO05D005529 1.6e-142 510.0 379 63.9
Manes.03G004800 Manihot esculenta HOM05D004578 ORTHO05D005529 1.6e-142 510.0 377 61.5
QL12p025516 Quercus lobata HOM05D004578 ORTHO05D005529 2.7e-142 509.2 372 63.4
Aa31sc160G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 1.0e-141 507.3 377 62.3
Eucgr.C04012 Eucalyptus grandis HOM05D004578 ORTHO05D005529 2.9e-141 505.8 377 63.1
THA.LOC104819936 Tarenaya hassleriana HOM05D004578 ORTHO05D005529 6.6e-141 504.6 380 63.2
CiPaw.08G020700 Carya illinoinensis HOM05D004578 ORTHO05D005529 1.1e-140 503.8 372 63.7
Potri.006G272800 Populus trichocarpa HOM05D004578 ORTHO05D005529 2.5e-140 502.7 373 61.9
Carub.0004s0400 Capsella rubella HOM05D004578 ORTHO05D005529 5.6e-140 501.5 380 60.8
AL4G15160 Arabidopsis lyrata HOM05D004578 ORTHO05D005529 1.6e-139 500.0 379 60.7
Cpa.g.sc23.31 Carica papaya HOM05D004578 ORTHO05D005529 1.6e-139 500.0 377 62.3
RcHm_v2.0_Chr6g0305131 Rosa chinensis HOM05D004578 ORTHO05D005529 2.8e-139 499.2 372 64.5
AT2G24580 Arabidopsis thaliana HOM05D004578 ORTHO05D005529 1.4e-138 496.9 375 60.5
CsaV3_3G047160 Cucumis sativus L. HOM05D004578 ORTHO05D005529 6.8e-138 494.6 379 60.9
Solyc08g006430.4 Solanum lycopersicum HOM05D004578 ORTHO05D005529 6.8e-138 494.6 377 61.0
PGSC0003DMG400026320 Solanum tuberosum HOM05D004578 ORTHO05D005529 4.4e-137 491.9 377 59.7
Lj7P748T39 Lonicera japonica HOM05D004578 ORTHO05D005529 5.8e-137 491.5 374 59.9
Dinv04517 Davidia involucrata HOM05D004578 ORTHO05D005529 9.8e-137 490.7 382 62.0
Sed0023873 Sechium edule HOM05D004578 ORTHO05D005529 1.3e-136 490.3 378 61.6
Sopen08g002370 Solanum pennellii HOM05D004578 ORTHO05D005529 2.9e-136 489.2 377 59.4
MELO3C003620.2 Cucumis melo HOM05D004578 ORTHO05D005529 3.7e-136 488.8 379 60.4
Peaxi162Scf00045g01734 Petunia axillaris HOM05D004578 ORTHO05D005529 4.9e-136 488.4 377 59.9
Eucgr.C04016 Eucalyptus grandis HOM05D004578 ORTHO05D005529 8.3e-136 487.6 377 60.7
PGR044G1507 Punica granatum HOM05D004578 ORTHO05D005529 8.3e-136 487.6 379 59.9
vmacro18918 Vaccinium macrocarpon HOM05D004578 ORTHO05D005529 1.4e-135 486.9 376 59.0
DCAR_000687 Daucus carota HOM05D004578 ORTHO05D005529 1.2e-134 483.8 373 59.0
Atru.chr7.2661 Acer truncatum HOM05D004578 ORTHO05D005529 1.6e-134 483.4 376 60.9
Eucgr.C04014 Eucalyptus grandis HOM05D004578 ORTHO05D005529 4.6e-134 481.9 377 59.9
PSO170G4894 Papaver somniferum HOM05D004578 ORTHO05D005529 4.6e-134 481.9 374 59.6
Cc08_g06480 Coffea canephora HOM05D004578 ORTHO05D005529 2.3e-133 479.6 378 58.7
CSS0030954 Camellia sinensis var. sinensis HOM05D004578 ORTHO05D005529 5.0e-133 478.4 375 60.0
Nitab4.5_0004131g0050 Nicotiana tabacum HOM05D004578 ORTHO05D005529 5.0e-133 478.4 375 59.2
TAR625G0669 Trochodendron aralioides HOM05D004578 ORTHO05D005529 5.0e-133 478.4 372 58.9
CAN.G673.19 Capsicum annuum HOM05D004578 ORTHO05D005529 8.6e-133 477.6 377 59.2
Rhsim10G0084800 Rhododendron simsii HOM05D004578 ORTHO05D005529 8.6e-133 477.6 376 59.3
Migut.A00428 Erythranthe guttata HOM05D004578 ORTHO05D005529 3.3e-132 475.7 373 57.9
SGA_v2.0_scaffold193G40672 Striga asiatica HOM05D004578 ORTHO05D005529 5.6e-132 474.9 374 59.4
Aqoxy7G02848 Aquilegia oxysepala HOM05D004578 ORTHO05D005529 7.3e-132 474.6 377 57.8
Nn8g40733 Nelumbo nucifera HOM05D004578 ORTHO05D005529 7.3e-132 474.6 373 59.2
SalBow4G0906 Salvia bowleyana HOM05D004578 ORTHO05D005529 9.5e-132 474.2 373 57.4
PSO063G3790 Papaver somniferum HOM05D004578 ORTHO05D005529 6.2e-131 471.5 373 57.9
Nitab4.5_0000555g0200 Nicotiana tabacum HOM05D004578 ORTHO05D005529 8.1e-131 471.1 375 58.4
Cc00_g13120 Coffea canephora HOM05D004578 ORTHO05D005529 5.2e-130 468.4 378 57.9
AUR62020290 Chenopodium quinoa HOM05D004578 ORTHO05D005529 2.6e-129 466.1 378 58.5
MSTRG.25795 Avicennia marina HOM05D004578 ORTHO05D005529 3.4e-129 465.7 378 56.9
Ah.13g067790 Amaranthus hybridus HOM05D004578 ORTHO05D005529 4.4e-129 465.3 377 58.6
MBI16_g05839_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 9.8e-129 464.2 377 57.0
BcaC02g08437 Brassica carinata HOM05D004578 ORTHO05D005529 1.3e-128 463.8 375 58.7
AUR62037713 Chenopodium quinoa HOM05D004578 ORTHO05D005529 1.7e-128 463.4 378 57.7
Prupe.1G458800 Prunus persica HOM05D004578 ORTHO05D005529 6.4e-128 461.5 380 60.0
TAR383G0560 Trochodendron aralioides HOM05D004578 ORTHO05D005529 6.4e-128 461.5 373 55.2
TAR383G1032 Trochodendron aralioides HOM05D004578 ORTHO05D005529 1.1e-127 460.7 373 55.0
ECA247G3559 Erigeron canadensis HOM05D004578 ORTHO05D005529 1.4e-127 460.3 388 58.5
EL10Ac2g02417 Beta vulgaris HOM05D004578 ORTHO05D005529 1.9e-127 459.9 377 55.2
Actinidia06432 Actinidia chinensis HOM05D004578 ORTHO05D005529 2.4e-127 459.5 383 56.7
Lsat_1_v5_gn_9_4341 Lactuca sativa HOM05D004578 ORTHO05D005529 3.2e-127 459.1 386 56.7
HanXRQChr15g0466441 Helianthus annuus HOM05D004578 ORTHO05D005529 3.9e-125 452.2 386 55.2
MBI13_g34048_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 1.9e-124 449.9 382 55.2
HanXRQChr10g0282951 Helianthus annuus HOM05D004578 ORTHO05D005529 8.9e-122 441.0 387 55.8
CDE02G4459 Ceratophyllum demersum HOM05D004578 ORTHO05D005529 1.7e-120 436.8 374 52.9
unitig_32.g11237 Utricularia gibba HOM05D004578 ORTHO05D005529 1.9e-119 433.3 374 55.1
Hund13109 Selenicereus undatus HOM05D004578 ORTHO05D005529 9.2e-119 431.0 380 53.7
Sc07g0007360 Simmondsia chinensis HOM05D004578 ORTHO05D005529 1.7e-117 426.8 374 53.5
Os09g0498500 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 7.1e-111 404.8 381 52.0
Zm00001eb317190 Zea mays HOM05D004578 ORTHO05D005529 3.9e-109 399.1 382 50.8
Actinidia22261 Actinidia chinensis HOM05D004578 ORTHO05D005529 2.8e-107 392.9 380 51.3
Os12g0543600 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 8.1e-107 391.3 369 52.0
ATR0626G173 Amborella trichopoda HOM05D004578 ORTHO05D005529 6.9e-106 388.3 378 51.1
Zm00001eb340420 Zea mays HOM05D004578 ORTHO05D005529 2.1e-102 376.7 382 49.7
SEGI_31206 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 6.6e-101 371.7 384 47.4
Os01g0316100 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 2.5e-100 369.8 382 50.8
Zm00001eb127180 Zea mays HOM05D004578 ORTHO05D005529 9.6e-100 367.9 381 49.3
SEGI_11947 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 6.2e-99 365.2 384 47.9
Psat5g025320 Pisum sativum HOM05D004578 ORTHO05D005529 6.0e-94 348.6 237 70.9
Pp3c9_3640 Physcomitrium patens HOM05D004578 ORTHO05D005529 4.0e-90 335.9 387 42.9
Zm00001eb140430 Zea mays HOM05D004578 ORTHO05D005529 8.4e-88 328.2 388 46.6
AagrBONN_evm.TU.Sc2ySwM_368.3376 Anthoceros agrestis HOM05D004578 ORTHO05D005529 2.3e-85 320.1 379 44.1
Mapoly0152s0014 Marchantia polymorpha HOM05D004578 ORTHO05D005529 2.3e-85 320.1 378 42.6
SMO115G0125 Selaginella moellendorffii HOM05D004578 ORTHO05D005529 1.1e-84 317.8 382 41.4
Gohir.D06G106866 Gossypium hirsutum HOM05D004578 ORTHO05D005529 1.6e-78 297.4 339 48.1
Gorai.010G121400 Gossypium raimondii HOM05D004578 ORTHO05D005529 1.6e-75 287.3 290 50.3
Lalb_Chr23g0269171 Lupinus albus HOM05D004578 ORTHO05D005529 1.1e-71 274.6 160 77.5
HPP92_017393 Vanilla planifolia HOM05D004578 ORTHO05D005529 1.1e-66 258.1 382 39.0
Cfa013285 Carpinus fangiana HOM05D004578 ORTHO05D005529 4.5e-65 252.7 216 58.3
Oeu008773.1 Olea europaea HOM05D004578 ORTHO05D005529 2.2e-64 250.4 369 39.0
Oeu018556.1 Olea europaea HOM05D004578 ORTHO05D005529 9.4e-63 245.0 369 38.8
unitig_32.g11239 Utricularia gibba HOM05D004578 ORTHO05D005529 8.8e-61 238.4 184 58.2
GSVIVG01033177001 Vitis vinifera HOM05D004578 ORTHO05D005529 2.2e-59 233.8 369 36.9
Hma1.2p1_1588F.1_g292320 Hydrangea macrophylla HOM05D004578 ORTHO05D005529 2.0e-57 227.3 369 38.8
PRCOL_00000645 Prasinoderma coloniale HOM05D004578 ORTHO05D005529 5.5e-47 192.6 415 30.8
Ca_28680_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 5.2e-37 159.5 380 28.9
HanXRQChr10g0282961 Helianthus annuus HOM05D004578 ORTHO05D005529 1.7e-35 154.5 143 51.7
Cc08_g06580 Coffea canephora HOM05D004578 ORTHO05D005529 7.0e-34 149.1 113 61.1
TPR.G12332 Trifolium pratense HOM05D004578 ORTHO05D005529 5.7e-28 129.4 67 91.0
unitig_32.g11238 Utricularia gibba HOM05D004578 ORTHO05D005529 6.6e-24 115.9 80 67.5
Actinidia22262 Actinidia chinensis HOM05D004578 ORTHO05D005529 6.2e-22 109.4 316 26.6
Cre12.g493500 Chlamydomonas reinhardtii HOM05D004578 ORTHO05D005529 3.4e-20 103.6 392 26.8
Psat2g052560 Pisum sativum HOM05D004790 ORTHO05D005678 1.1e-15 88.6 45 88.9
COL.COLO4_30024 Corchorus olitorius HOM05D004578 ORTHO05D005529 2.7e-09 67.4 40 75.0
VMungo1041G0001 Vigna mungo HOM05D004578 ORTHO05D005529 2.7e-09 67.4 49 65.3
Psat0s2347g0040 Pisum sativum HOM05D004578 ORTHO05D005529 3.0e-08 63.9 160 31.9
Psat2g156560 Pisum sativum HOM05D000020 ORTHO05D321553 8.1e-06 55.8 47 55.3


User provided reference genes

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