Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_15651_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 6.9e-234 813.5 393 100.0
Ca_15659_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 6.9e-234 813.5 393 100.0
TPR.G12360 Trifolium pratense HOM05D004578 ORTHO05D005529 4.0e-189 664.8 386 81.3
Medtr3g109010 Medicago truncatula HOM05D004578 ORTHO05D005529 7.5e-188 660.6 381 81.6
Ca_15652_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.6e-185 652.9 377 83.3
Ca_15660_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.6e-185 652.9 377 83.3
Medtr3g108990 Medicago truncatula HOM05D004578 ORTHO05D005529 1.5e-183 646.4 393 77.4
TPR.G12429 Trifolium pratense HOM05D004578 ORTHO05D005529 2.1e-174 615.9 394 76.1
Lj1g0024454 Lotus japonicus HOM05D004578 ORTHO05D005529 2.3e-173 612.5 393 73.8
VMungo1309G1783 Vigna mungo HOM05D004578 ORTHO05D005529 9.2e-170 600.5 396 71.5
Glyma.04G076300 Glycine max HOM05D004578 ORTHO05D005529 6.6e-168 594.3 397 71.0
arahy.Tifrunner.gnm1.ann1.M0AD1K Arachis hypogaea HOM05D004578 ORTHO05D005529 3.6e-166 588.6 392 69.4
arahy.Tifrunner.gnm1.ann1.W2ETIH Arachis hypogaea HOM05D004578 ORTHO05D005529 1.1e-165 587.0 392 69.6
Phvul.009G102000 Phaseolus vulgaris HOM05D004578 ORTHO05D005529 1.8e-165 586.3 396 70.2
MD15G1106400 Malus domestica HOM05D004578 ORTHO05D005529 6.0e-161 571.2 383 70.2
Prupe.1G458600 Prunus persica HOM05D004578 ORTHO05D005529 1.7e-160 569.7 383 70.0
Psat5g024080 Pisum sativum HOM05D004578 ORTHO05D005529 1.9e-159 566.2 388 67.0
MD08G1126500 Malus domestica HOM05D004578 ORTHO05D005529 1.6e-158 563.1 383 68.9
FAN27G0985 Fragaria x ananassa HOM05D004578 ORTHO05D005529 8.9e-157 557.4 386 68.4
Duzib168G2341 Durio zibethinus HOM05D004578 ORTHO05D005529 2.6e-156 555.8 383 67.4
FAN15G2443 Fragaria x ananassa HOM05D004578 ORTHO05D005529 4.4e-156 555.1 386 67.6
COL.COLO4_19019 Corchorus olitorius HOM05D004578 ORTHO05D005529 7.6e-156 554.3 384 66.7
Prupe.1G458900 Prunus persica HOM05D004578 ORTHO05D005529 7.6e-156 554.3 390 67.4
FAN20G1103 Fragaria x ananassa HOM05D004578 ORTHO05D005529 1.7e-155 553.1 386 67.4
FvH4_2g36660 Fragaria vesca HOM05D004578 ORTHO05D005529 3.8e-155 552.0 386 67.4
Sabra18G0013200 Salix brachista HOM05D004578 ORTHO05D005529 3.2e-154 548.9 386 66.8
Sabra18G0015700 Salix brachista HOM05D004578 ORTHO05D005529 3.2e-154 548.9 386 66.8
Thecc.09G008600 Theobroma cacao HOM05D004578 ORTHO05D005529 3.2e-154 548.9 383 66.3
QL12p025440 Quercus lobata HOM05D004578 ORTHO05D005529 2.1e-153 546.2 383 66.8
Cfa013284 Carpinus fangiana HOM05D004578 ORTHO05D005529 3.5e-153 545.4 384 67.4
Potri.018G008700 Populus trichocarpa HOM05D004578 ORTHO05D005529 3.5e-153 545.4 386 67.1
CANSAT25G1430 Cannabis sativa HOM05D004578 ORTHO05D005529 2.3e-152 542.7 386 67.4
Cfa013287 Carpinus fangiana HOM05D004578 ORTHO05D005529 3.0e-152 542.3 384 67.2
TWI32G0020 Tripterygium wilfordii HOM05D004578 ORTHO05D005529 3.9e-152 542.0 383 65.8
Haze_21761 Corylus avellana HOM05D004578 ORTHO05D005529 1.1e-151 540.4 384 67.7
Sabra06G0211200 Salix brachista HOM05D004578 ORTHO05D005529 1.5e-151 540.0 386 65.5
Manes.03G004800 Manihot esculenta HOM05D004578 ORTHO05D005529 3.3e-151 538.9 383 64.5
Ciclev10008459m.g Citrus clementina HOM05D004578 ORTHO05D005529 2.1e-150 536.2 385 64.9
Gorai.010G121600 Gossypium raimondii HOM05D004578 ORTHO05D005529 2.1e-150 536.2 382 66.0
QL12p025516 Quercus lobata HOM05D004578 ORTHO05D005529 2.1e-150 536.2 383 65.5
Cpa.g.sc23.31 Carica papaya HOM05D004578 ORTHO05D005529 1.8e-149 533.1 388 65.2
Gohir.A06G104800 Gossypium hirsutum HOM05D004578 ORTHO05D005529 2.4e-149 532.7 382 65.4
Gohir.D06G107000 Gossypium hirsutum HOM05D004578 ORTHO05D005529 2.4e-149 532.7 382 65.7
Potri.006G272800 Populus trichocarpa HOM05D004578 ORTHO05D005529 2.0e-148 529.6 387 64.1
Lalb_Chr11g0064181 Lupinus albus HOM05D004578 ORTHO05D005529 2.6e-148 529.3 385 65.5
Ciclev10008463m.g Citrus clementina HOM05D004578 ORTHO05D005529 2.2e-147 526.2 385 65.5
A04p18950 Brassica napus HOM05D004578 ORTHO05D005529 4.9e-147 525.0 387 63.3
BolC4t26970H Brassica oleracea HOM05D004578 ORTHO05D005529 4.9e-147 525.0 387 63.3
Manes.16G134500 Manihot esculenta HOM05D004578 ORTHO05D005529 4.9e-147 525.0 383 63.7
BraA04t17495Z Brassica rapa HOM05D004578 ORTHO05D005529 6.4e-147 524.6 387 63.3
BcaC02g08438 Brassica carinata HOM05D004578 ORTHO05D005529 1.4e-146 523.5 387 63.0
C04p54190 Brassica napus HOM05D004578 ORTHO05D005529 1.4e-146 523.5 387 63.0
Aa31sc715G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 3.2e-146 522.3 391 62.7
BcaB06g27986 Brassica carinata HOM05D004578 ORTHO05D005529 3.2e-146 522.3 388 62.9
CiPaw.07G211300 Carya illinoinensis HOM05D004578 ORTHO05D005529 3.2e-146 522.3 384 64.8
Thhalv10000150m.g Eutrema salsugineum HOM05D004578 ORTHO05D005529 5.4e-146 521.5 390 62.1
ClCG05G026450 Citrullus lanatus HOM05D004578 ORTHO05D005529 9.3e-146 520.8 385 63.1
Cfa013283 Carpinus fangiana HOM05D004578 ORTHO05D005529 2.1e-145 519.6 374 66.0
RcHm_v2.0_Chr6g0305131 Rosa chinensis HOM05D004578 ORTHO05D005529 2.7e-145 519.2 385 65.2
Eucgr.C04012 Eucalyptus grandis HOM05D004578 ORTHO05D005529 3.5e-145 518.8 384 63.8
Solyc08g006430.4 Solanum lycopersicum HOM05D004578 ORTHO05D005529 4.6e-145 518.5 388 62.6
Aa31sc160G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 3.9e-144 515.4 384 62.2
CARHR117360 Cardamine hirsuta HOM05D004578 ORTHO05D005529 3.9e-144 515.4 390 61.0
Dinv04517 Davidia involucrata HOM05D004578 ORTHO05D005529 3.9e-144 515.4 392 63.5
CiPaw.08G020700 Carya illinoinensis HOM05D004578 ORTHO05D005529 1.9e-143 513.1 383 62.4
Sopen08g002370 Solanum pennellii HOM05D004578 ORTHO05D005529 1.9e-143 513.1 388 61.1
Sp4g03570 Schrenkiella parvula HOM05D004578 ORTHO05D005529 4.3e-143 511.9 386 61.4
PGSC0003DMG400026320 Solanum tuberosum HOM05D004578 ORTHO05D005529 4.3e-143 511.9 388 61.1
DCAR_000687 Daucus carota HOM05D004578 ORTHO05D005529 7.3e-143 511.1 389 60.7
Peaxi162Scf00045g01734 Petunia axillaris HOM05D004578 ORTHO05D005529 9.6e-143 510.8 390 60.8
AT2G24580 Arabidopsis thaliana HOM05D004578 ORTHO05D005529 1.3e-142 510.4 390 60.5
THA.LOC104819936 Tarenaya hassleriana HOM05D004578 ORTHO05D005529 1.3e-142 510.4 386 63.0
AL4G15160 Arabidopsis lyrata HOM05D004578 ORTHO05D005529 2.1e-142 509.6 385 61.3
Carub.0004s0400 Capsella rubella HOM05D004578 ORTHO05D005529 6.2e-142 508.1 386 61.4
Atru.chr7.2661 Acer truncatum HOM05D004578 ORTHO05D005529 1.1e-141 507.3 386 63.2
CSS0030954 Camellia sinensis var. sinensis HOM05D004578 ORTHO05D005529 2.4e-141 506.1 393 61.3
PGR044G1507 Punica granatum HOM05D004578 ORTHO05D005529 4.5e-140 501.9 387 59.4
SalBow4G0906 Salvia bowleyana HOM05D004578 ORTHO05D005529 7.6e-140 501.1 392 58.7
Lj7P748T39 Lonicera japonica HOM05D004578 ORTHO05D005529 1.3e-139 500.4 375 61.1
Cc08_g06480 Coffea canephora HOM05D004578 ORTHO05D005529 3.8e-139 498.8 392 58.9
SGA_v2.0_scaffold193G40672 Striga asiatica HOM05D004578 ORTHO05D005529 1.4e-138 496.9 389 59.9
CsaV3_3G047160 Cucumis sativus L. HOM05D004578 ORTHO05D005529 1.9e-138 496.5 385 60.0
Eucgr.C04016 Eucalyptus grandis HOM05D004578 ORTHO05D005529 1.9e-138 496.5 386 60.1
Nitab4.5_0000555g0200 Nicotiana tabacum HOM05D004578 ORTHO05D005529 4.2e-138 495.4 388 59.8
TAR625G0669 Trochodendron aralioides HOM05D004578 ORTHO05D005529 4.2e-138 495.4 383 60.1
MSTRG.25795 Avicennia marina HOM05D004578 ORTHO05D005529 7.1e-138 494.6 384 58.9
PSO170G4894 Papaver somniferum HOM05D004578 ORTHO05D005529 9.3e-138 494.2 385 59.2
Migut.A00428 Erythranthe guttata HOM05D004578 ORTHO05D005529 1.2e-137 493.8 392 58.4
Nn8g40733 Nelumbo nucifera HOM05D004578 ORTHO05D005529 1.2e-137 493.8 384 60.9
Eucgr.C04014 Eucalyptus grandis HOM05D004578 ORTHO05D005529 2.1e-137 493.0 383 59.8
CAN.G673.19 Capsicum annuum HOM05D004578 ORTHO05D005529 3.5e-137 492.3 390 59.5
MELO3C003620.2 Cucumis melo HOM05D004578 ORTHO05D005529 2.3e-136 489.6 385 59.5
Sed0023873 Sechium edule HOM05D004578 ORTHO05D005529 3.0e-136 489.2 384 60.2
MBI16_g05839_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 6.7e-136 488.0 382 60.2
Prupe.1G458800 Prunus persica HOM05D004578 ORTHO05D005529 8.7e-136 487.6 386 61.7
vmacro18918 Vaccinium macrocarpon HOM05D004578 ORTHO05D005529 8.7e-136 487.6 394 58.1
PSO063G3790 Papaver somniferum HOM05D004578 ORTHO05D005529 2.5e-135 486.1 384 58.1
Nitab4.5_0004131g0050 Nicotiana tabacum HOM05D004578 ORTHO05D005529 7.4e-135 484.6 371 60.4
Aqoxy7G02848 Aquilegia oxysepala HOM05D004578 ORTHO05D005529 4.8e-134 481.9 383 58.7
TAR383G0560 Trochodendron aralioides HOM05D004578 ORTHO05D005529 8.1e-134 481.1 384 57.3
TAR383G1032 Trochodendron aralioides HOM05D004578 ORTHO05D005529 1.4e-133 480.3 384 57.0
Cc00_g13120 Coffea canephora HOM05D004578 ORTHO05D005529 1.2e-132 477.2 384 57.6
BcaC02g08437 Brassica carinata HOM05D004578 ORTHO05D005529 2.6e-132 476.1 383 59.3
HanXRQChr15g0466441 Helianthus annuus HOM05D004578 ORTHO05D005529 2.6e-132 476.1 403 55.6
ECA247G3559 Erigeron canadensis HOM05D004578 ORTHO05D005529 3.4e-132 475.7 405 57.0
AUR62020290 Chenopodium quinoa HOM05D004578 ORTHO05D005529 7.6e-132 474.6 387 57.6
Actinidia06432 Actinidia chinensis HOM05D004578 ORTHO05D005529 1.3e-131 473.8 400 56.8
Lsat_1_v5_gn_9_4341 Lactuca sativa HOM05D004578 ORTHO05D005529 2.2e-131 473.0 403 55.6
Rhsim10G0084800 Rhododendron simsii HOM05D004578 ORTHO05D005529 1.1e-130 470.7 377 59.9
AUR62037713 Chenopodium quinoa HOM05D004578 ORTHO05D005529 1.4e-130 470.3 384 57.3
EL10Ac2g02417 Beta vulgaris HOM05D004578 ORTHO05D005529 4.6e-129 465.3 386 55.2
Ah.13g067790 Amaranthus hybridus HOM05D004578 ORTHO05D005529 6.0e-129 464.9 383 58.0
MBI13_g34048_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 2.3e-128 463.0 392 55.6
HanXRQChr10g0282951 Helianthus annuus HOM05D004578 ORTHO05D005529 6.7e-128 461.5 398 55.5
Sc07g0007360 Simmondsia chinensis HOM05D004578 ORTHO05D005529 6.7e-128 461.5 390 55.4
Hund13109 Selenicereus undatus HOM05D004578 ORTHO05D005529 1.6e-126 456.8 386 55.2
CDE02G4459 Ceratophyllum demersum HOM05D004578 ORTHO05D005529 4.9e-123 445.3 385 54.0
unitig_32.g11237 Utricularia gibba HOM05D004578 ORTHO05D005529 3.5e-121 439.1 385 54.3
Os09g0498500 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 1.7e-115 420.2 392 53.1
Actinidia22261 Actinidia chinensis HOM05D004578 ORTHO05D005529 6.1e-113 411.8 397 51.4
Zm00001eb317190 Zea mays HOM05D004578 ORTHO05D005529 1.3e-112 410.6 394 50.8
Psat5g025320 Pisum sativum HOM05D004578 ORTHO05D005529 4.3e-111 405.6 248 77.8
ATR0626G173 Amborella trichopoda HOM05D004578 ORTHO05D005529 6.3e-110 401.7 389 51.7
Zm00001eb340420 Zea mays HOM05D004578 ORTHO05D005529 5.3e-109 398.7 393 51.4
Os12g0543600 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 1.7e-107 393.7 371 52.8
Zm00001eb127180 Zea mays HOM05D004578 ORTHO05D005529 2.1e-105 386.7 392 51.0
Os01g0316100 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 2.0e-103 380.2 393 50.4
SEGI_31206 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 4.4e-103 379.0 395 46.1
SEGI_11947 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 9.1e-101 371.3 395 46.3
Pp3c9_3640 Physcomitrium patens HOM05D004578 ORTHO05D005529 1.5e-95 354.0 395 44.3
Zm00001eb140430 Zea mays HOM05D004578 ORTHO05D005529 8.2e-94 348.2 395 48.4
Mapoly0152s0014 Marchantia polymorpha HOM05D004578 ORTHO05D005529 1.2e-92 344.4 392 44.1
SMO115G0125 Selaginella moellendorffii HOM05D004578 ORTHO05D005529 1.6e-89 334.0 392 41.6
AagrBONN_evm.TU.Sc2ySwM_368.3376 Anthoceros agrestis HOM05D004578 ORTHO05D005529 3.7e-86 322.8 378 42.6
Gohir.D06G106866 Gossypium hirsutum HOM05D004578 ORTHO05D005529 4.2e-82 309.3 350 48.3
Gorai.010G121400 Gossypium raimondii HOM05D004578 ORTHO05D005529 9.1e-77 291.6 301 49.5
Oeu018556.1 Olea europaea HOM05D004578 ORTHO05D005529 3.1e-69 266.5 383 39.7
Lalb_Chr23g0269171 Lupinus albus HOM05D004578 ORTHO05D005529 7.0e-69 265.4 161 75.2
Oeu008773.1 Olea europaea HOM05D004578 ORTHO05D005529 4.5e-68 262.7 380 38.9
HPP92_017393 Vanilla planifolia HOM05D004578 ORTHO05D005529 4.5e-68 262.7 383 39.2
GSVIVG01033177001 Vitis vinifera HOM05D004578 ORTHO05D005529 4.7e-65 252.7 380 37.9
Cfa013285 Carpinus fangiana HOM05D004578 ORTHO05D005529 4.1e-61 239.6 217 56.7
Hma1.2p1_1588F.1_g292320 Hydrangea macrophylla HOM05D004578 ORTHO05D005529 2.0e-60 237.3 380 38.4
unitig_32.g11239 Utricularia gibba HOM05D004578 ORTHO05D005529 2.3e-59 233.8 185 57.3
PRCOL_00000645 Prasinoderma coloniale HOM05D004578 ORTHO05D005529 3.1e-56 223.4 427 33.0
Ca_28680_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 9.5e-42 175.3 390 29.2
HanXRQChr10g0282961 Helianthus annuus HOM05D004578 ORTHO05D005529 1.9e-37 161.0 160 48.1
Cc08_g06580 Coffea canephora HOM05D004578 ORTHO05D005529 2.5e-34 150.6 108 63.9
TPR.G12332 Trifolium pratense HOM05D004578 ORTHO05D005529 4.2e-29 133.3 99 67.7
unitig_32.g11238 Utricularia gibba HOM05D004578 ORTHO05D005529 3.9e-27 126.7 88 64.8
Actinidia22262 Actinidia chinensis HOM05D004578 ORTHO05D005529 3.4e-23 113.6 316 25.9
Cre12.g493500 Chlamydomonas reinhardtii HOM05D004578 ORTHO05D005529 5.1e-19 99.8 403 27.0
Psat2g052560 Pisum sativum HOM05D004790 ORTHO05D005678 9.0e-16 89.0 45 88.9
Psat0s2347g0040 Pisum sativum HOM05D004578 ORTHO05D005529 6.7e-11 72.8 161 33.5
COL.COLO4_30024 Corchorus olitorius HOM05D004578 ORTHO05D005529 3.7e-09 67.0 40 75.0
VMungo1041G0001 Vigna mungo HOM05D004578 ORTHO05D005529 2.4e-08 64.3 49 63.3
Psat2g156560 Pisum sativum HOM05D000020 ORTHO05D321553 6.5e-06 56.2 47 55.3


User provided reference genes

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